data_JDK
#

_chem_comp.id                                   JDK
_chem_comp.name                                 "3-[1-[[4-(piperidin-1-ylmethyl)phenyl]methyl]indol-6-yl]-1~{H}-pyrazol-5-amine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H27 N5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-19
_chem_comp.pdbx_modified_date                   2019-09-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       385.505
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JDK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6QRA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JDK  C10  C1   C  0  1  Y  N  N  -24.086  -19.205  11.742   4.238   2.144   1.128  C10  JDK   1  
JDK  C13  C2   C  0  1  Y  N  N  -24.717  -22.814  11.159   1.437   3.969  -0.308  C13  JDK   2  
JDK  C15  C3   C  0  1  N  N  N  -22.547  -23.928  11.549   0.212   2.259  -1.686  C15  JDK   3  
JDK  C17  C4   C  0  1  Y  N  N  -21.850  -23.482   9.028  -1.929   2.457  -0.405  C17  JDK   4  
JDK  C20  C5   C  0  1  N  N  N  -19.815  -25.710   6.640  -4.053  -0.047   1.457  C20  JDK   5  
JDK  C22  C6   C  0  1  N  N  N  -18.286  -25.498   5.084  -6.328  -0.865   1.336  C22  JDK   6  
JDK  C24  C7   C  0  1  N  N  N  -16.010  -24.863   5.800  -7.060  -2.334  -0.547  C24  JDK   7  
JDK  C26  C8   C  0  1  N  N  N  -17.824  -24.967   7.447  -4.687  -1.599  -0.289  C26  JDK   8  
JDK  C28  C9   C  0  1  Y  N  N  -21.237  -25.535  10.227  -0.899   0.304  -0.587  C28  JDK   9  
JDK  N01  N1   N  0  1  N  N  N  -17.771  -16.438  12.769   6.036  -4.375   0.445  N01  JDK  10  
JDK  C02  C10  C  0  1  Y  N  N  -18.628  -17.592  12.727   5.128  -3.375   0.108  C02  JDK  11  
JDK  N03  N2   N  0  1  Y  N  N  -18.217  -18.892  12.954   4.041  -3.518  -0.695  N03  JDK  12  
JDK  N04  N3   N  0  1  Y  N  N  -19.325  -19.731  12.833   3.397  -2.277  -0.777  N04  JDK  13  
JDK  C05  C11  C  0  1  Y  N  N  -20.398  -18.991  12.572   4.071  -1.412  -0.049  C05  JDK  14  
JDK  C06  C12  C  0  1  Y  N  N  -21.735  -19.532  12.278   3.731   0.020   0.139  C06  JDK  15  
JDK  C07  C13  C  0  1  Y  N  N  -21.815  -20.917  12.066   2.611   0.551  -0.487  C07  JDK  16  
JDK  C08  C14  C  0  1  Y  N  N  -23.083  -21.452  11.704   2.300   1.895  -0.319  C08  JDK  17  
JDK  C09  C15  C  0  1  Y  N  N  -24.182  -20.618  11.551   3.118   2.696   0.500  C09  JDK  18  
JDK  C11  C16  C  0  1  Y  N  N  -22.837  -18.654  12.101   4.540   0.827   0.946  C11  JDK  19  
JDK  C12  C17  C  0  1  Y  N  N  -25.227  -21.467  11.189   2.522   4.034   0.480  C12  JDK  20  
JDK  N14  N4   N  0  1  Y  N  N  -23.463  -22.768  11.453   1.288   2.699  -0.794  N14  JDK  21  
JDK  C16  C18  C  0  1  Y  N  N  -21.853  -24.328  10.245  -0.902   1.657  -0.870  C16  JDK  22  
JDK  C18  C19  C  0  1  Y  N  N  -21.215  -23.909   7.906  -2.949   1.906   0.348  C18  JDK  23  
JDK  C19  C20  C  0  1  Y  N  N  -20.547  -25.187   7.895  -2.942   0.554   0.636  C19  JDK  24  
JDK  N21  N5   N  0  1  N  N  N  -18.772  -25.085   6.353  -5.134  -0.493   0.567  N21  JDK  25  
JDK  C23  C21  C  0  1  N  N  N  -16.769  -25.673   4.914  -7.476  -1.183   0.374  C23  JDK  26  
JDK  C25  C22  C  0  1  N  N  N  -16.352  -25.210   7.140  -5.786  -1.939  -1.299  C25  JDK  27  
JDK  C27  C23  C  0  1  Y  N  N  -20.573  -25.988   9.048  -1.915  -0.247   0.171  C27  JDK  28  
JDK  C29  C24  C  0  1  Y  N  N  -20.013  -17.627  12.444   5.167  -2.083   0.526  C29  JDK  29  
JDK  H1   H1   H  0  1  N  N  N  -24.951  -18.572  11.614   4.867   2.762   1.752  H1   JDK  30  
JDK  H2   H2   H  0  1  N  N  N  -25.285  -23.704  10.931   0.778   4.797  -0.525  H2   JDK  31  
JDK  H3   H3   H  0  1  N  N  N  -23.130  -24.792  11.902  -0.168   3.114  -2.245  H3   JDK  32  
JDK  H4   H4   H  0  1  N  N  N  -21.768  -23.685  12.287   0.598   1.513  -2.380  H4   JDK  33  
JDK  H5   H5   H  0  1  N  N  N  -22.353  -22.526   9.033  -1.932   3.515  -0.626  H5   JDK  34  
JDK  H6   H6   H  0  1  N  N  N  -20.504  -25.640   5.786  -3.670  -0.900   2.019  H6   JDK  35  
JDK  H7   H7   H  0  1  N  N  N  -19.549  -26.764   6.811  -4.438   0.701   2.150  H7   JDK  36  
JDK  H8   H8   H  0  1  N  N  N  -18.613  -24.748   4.349  -6.110  -1.743   1.944  H8   JDK  37  
JDK  H9   H9   H  0  1  N  N  N  -18.755  -26.466   4.854  -6.616  -0.037   1.983  H9   JDK  38  
JDK  H10  H10  H  0  1  N  N  N  -14.937  -25.038   5.634  -6.869  -3.226   0.049  H10  JDK  39  
JDK  H11  H11  H  0  1  N  N  N  -16.240  -23.802   5.622  -7.857  -2.536  -1.262  H11  JDK  40  
JDK  H12  H12  H  0  1  N  N  N  -17.911  -23.947   7.848  -3.783  -1.304  -0.822  H12  JDK  41  
JDK  H13  H13  H  0  1  N  N  N  -18.122  -25.691   8.219  -4.477  -2.473   0.327  H13  JDK  42  
JDK  H14  H14  H  0  1  N  N  N  -21.249  -26.157  11.110  -0.097  -0.322  -0.951  H14  JDK  43  
JDK  H15  H15  H  0  1  N  N  N  -16.839  -16.722  12.996   5.921  -5.273   0.097  H15  JDK  44  
JDK  H16  H16  H  0  1  N  N  N  -17.774  -15.988  11.876   6.785  -4.174   1.029  H16  JDK  45  
JDK  H17  H17  H  0  1  N  N  N  -17.284  -19.182  13.168   3.761  -4.335  -1.135  H17  JDK  46  
JDK  H18  H18  H  0  1  N  N  N  -20.948  -21.552  12.173   1.989  -0.075  -1.109  H18  JDK  47  
JDK  H19  H19  H  0  1  N  N  N  -22.722  -17.589  12.238   5.409   0.404   1.428  H19  JDK  48  
JDK  H20  H20  H  0  1  N  N  N  -26.241  -21.167  10.970   2.887   4.907   1.000  H20  JDK  49  
JDK  H21  H21  H  0  1  N  N  N  -21.210  -23.291   7.021  -3.751   2.531   0.711  H21  JDK  50  
JDK  H23  H23  H  0  1  N  N  N  -16.516  -26.727   5.100  -8.358  -1.474   0.944  H23  JDK  51  
JDK  H24  H24  H  0  1  N  N  N  -16.500  -25.408   3.881  -7.704  -0.302  -0.225  H24  JDK  52  
JDK  H25  H25  H  0  1  N  N  N  -16.130  -26.276   7.296  -5.460  -2.770  -1.925  H25  JDK  53  
JDK  H26  H26  H  0  1  N  N  N  -15.743  -24.604   7.828  -5.987  -1.069  -1.925  H26  JDK  54  
JDK  H27  H27  H  0  1  N  N  N  -20.088  -26.953   9.042  -1.910  -1.303   0.396  H27  JDK  55  
JDK  H28  H28  H  0  1  N  N  N  -20.647  -16.792  12.185   5.910  -1.646   1.177  H28  JDK  56  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JDK  C23  C22  SING  N  N   1  
JDK  C23  C24  SING  N  N   2  
JDK  C22  N21  SING  N  N   3  
JDK  C24  C25  SING  N  N   4  
JDK  N21  C20  SING  N  N   5  
JDK  N21  C26  SING  N  N   6  
JDK  C20  C19  SING  N  N   7  
JDK  C25  C26  SING  N  N   8  
JDK  C19  C18  DOUB  Y  N   9  
JDK  C19  C27  SING  Y  N  10  
JDK  C18  C17  SING  Y  N  11  
JDK  C17  C16  DOUB  Y  N  12  
JDK  C27  C28  DOUB  Y  N  13  
JDK  C28  C16  SING  Y  N  14  
JDK  C16  C15  SING  N  N  15  
JDK  C13  C12  DOUB  Y  N  16  
JDK  C13  N14  SING  Y  N  17  
JDK  C12  C09  SING  Y  N  18  
JDK  N14  C15  SING  N  N  19  
JDK  N14  C08  SING  Y  N  20  
JDK  C09  C08  DOUB  Y  N  21  
JDK  C09  C10  SING  Y  N  22  
JDK  C08  C07  SING  Y  N  23  
JDK  C10  C11  DOUB  Y  N  24  
JDK  C07  C06  DOUB  Y  N  25  
JDK  C11  C06  SING  Y  N  26  
JDK  C06  C05  SING  N  N  27  
JDK  C29  C05  SING  Y  N  28  
JDK  C29  C02  DOUB  Y  N  29  
JDK  C05  N04  DOUB  Y  N  30  
JDK  C02  N01  SING  N  N  31  
JDK  C02  N03  SING  Y  N  32  
JDK  N04  N03  SING  Y  N  33  
JDK  C10  H1   SING  N  N  34  
JDK  C13  H2   SING  N  N  35  
JDK  C15  H3   SING  N  N  36  
JDK  C15  H4   SING  N  N  37  
JDK  C17  H5   SING  N  N  38  
JDK  C20  H6   SING  N  N  39  
JDK  C20  H7   SING  N  N  40  
JDK  C22  H8   SING  N  N  41  
JDK  C22  H9   SING  N  N  42  
JDK  C24  H10  SING  N  N  43  
JDK  C24  H11  SING  N  N  44  
JDK  C26  H12  SING  N  N  45  
JDK  C26  H13  SING  N  N  46  
JDK  C28  H14  SING  N  N  47  
JDK  N01  H15  SING  N  N  48  
JDK  N01  H16  SING  N  N  49  
JDK  N03  H17  SING  N  N  50  
JDK  C07  H18  SING  N  N  51  
JDK  C11  H19  SING  N  N  52  
JDK  C12  H20  SING  N  N  53  
JDK  C18  H21  SING  N  N  54  
JDK  C23  H23  SING  N  N  55  
JDK  C23  H24  SING  N  N  56  
JDK  C25  H25  SING  N  N  57  
JDK  C25  H26  SING  N  N  58  
JDK  C27  H27  SING  N  N  59  
JDK  C29  H28  SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JDK  InChI             InChI                 1.03   "InChI=1S/C24H27N5/c25-24-15-22(26-27-24)21-9-8-20-10-13-29(23(20)14-21)17-19-6-4-18(5-7-19)16-28-11-2-1-3-12-28/h4-10,13-15H,1-3,11-12,16-17H2,(H3,25,26,27)"  
JDK  InChIKey          InChI                 1.03   VDYQWEHGAZCAGH-UHFFFAOYSA-N  
JDK  SMILES_CANONICAL  CACTVS                3.385  "Nc1[nH]nc(c1)c2ccc3ccn(Cc4ccc(CN5CCCCC5)cc4)c3c2"  
JDK  SMILES            CACTVS                3.385  "Nc1[nH]nc(c1)c2ccc3ccn(Cc4ccc(CN5CCCCC5)cc4)c3c2"  
JDK  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1Cn2ccc3c2cc(cc3)c4cc([nH]n4)N)CN5CCCCC5"  
JDK  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1Cn2ccc3c2cc(cc3)c4cc([nH]n4)N)CN5CCCCC5"  
#
_pdbx_chem_comp_identifier.comp_id          JDK
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "3-[1-[[4-(piperidin-1-ylmethyl)phenyl]methyl]indol-6-yl]-1~{H}-pyrazol-5-amine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JDK  "Create component"  2019-02-19  RCSB  
JDK  "Initial release"   2019-09-18  RCSB  
##
