data_EDK
# 
_chem_comp.id                                    EDK 
_chem_comp.name                                  "(2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H29 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-03-15 
_chem_comp.pdbx_modified_date                    2019-02-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        495.569 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EDK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6FZF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EDK O3  O1  O 0 1 N N N -21.265 25.863 0.057  -3.526 -4.319 0.817  O3  EDK 1  
EDK C4  C1  C 0 1 Y N N -16.204 29.174 -2.293 1.175  0.344  1.740  C4  EDK 2  
EDK C5  C2  C 0 1 Y N N -17.203 28.242 -2.081 -0.065 -0.257 1.841  C5  EDK 3  
EDK C6  C3  C 0 1 Y N N -18.508 28.505 -2.456 -0.192 -1.619 1.639  C6  EDK 4  
EDK N1  N1  N 0 1 N N N -19.464 28.025 0.289  -2.499 -0.881 -0.022 N1  EDK 5  
EDK C7  C4  C 0 1 N N N -19.610 27.522 -2.137 -1.546 -2.272 1.750  C7  EDK 6  
EDK C8  C5  C 0 1 N N S -20.356 27.888 -0.848 -2.230 -2.264 0.382  C8  EDK 7  
EDK N2  N2  N 0 1 Y N N -15.692 35.639 -1.667 6.536  0.530  -1.591 N2  EDK 8  
EDK C9  C6  C 0 1 Y N N -19.855 28.520 1.523  -2.618 -0.561 -1.367 C9  EDK 9  
EDK C10 C7  C 0 1 Y N N -18.847 28.939 2.416  -2.758 0.779  -1.765 C10 EDK 10 
EDK C11 C8  C 0 1 Y N N -19.220 29.620 3.579  -2.877 1.087  -3.123 C11 EDK 11 
EDK C12 C9  C 0 1 Y N N -20.553 29.857 3.859  -2.856 0.078  -4.061 C12 EDK 12 
EDK C13 C10 C 0 1 Y N N -21.532 29.429 2.993  -2.718 -1.243 -3.665 C13 EDK 13 
EDK C14 C11 C 0 1 Y N N -21.192 28.769 1.826  -2.593 -1.564 -2.328 C14 EDK 14 
EDK C15 C12 C 0 1 N N N -17.394 28.684 2.146  -2.780 1.853  -0.757 C15 EDK 15 
EDK C22 C13 C 0 1 N N N -21.439 26.856 -0.610 -3.528 -3.024 0.464  C22 EDK 16 
EDK O2  O2  O 0 1 N N N -22.547 27.165 -1.233 -4.571 -2.469 0.212  O2  EDK 17 
EDK C16 C14 C 0 1 Y N N -16.342 29.138 3.095  -3.978 2.052  0.086  C16 EDK 18 
EDK C21 C15 C 0 1 Y N N -15.252 29.861 2.618  -5.129 1.295  -0.143 C21 EDK 19 
EDK C20 C16 C 0 1 Y N N -14.228 30.235 3.470  -6.244 1.485  0.647  C20 EDK 20 
EDK C19 C17 C 0 1 Y N N -14.281 29.899 4.807  -6.223 2.424  1.664  C19 EDK 21 
EDK C18 C18 C 0 1 Y N N -15.357 29.190 5.294  -5.085 3.177  1.896  C18 EDK 22 
EDK C17 C19 C 0 1 Y N N -16.381 28.808 4.447  -3.962 2.993  1.117  C17 EDK 23 
EDK O1  O3  O 0 1 N N N -17.059 28.105 1.119  -1.812 2.576  -0.617 O1  EDK 24 
EDK C23 C20 C 0 1 Y N N -18.797 29.704 -3.076 0.920  -2.382 1.336  C23 EDK 25 
EDK C24 C21 C 0 1 Y N N -17.805 30.642 -3.297 2.161  -1.786 1.234  C24 EDK 26 
EDK C3  C22 C 0 1 Y N N -16.511 30.381 -2.887 2.291  -0.419 1.430  C3  EDK 27 
EDK O   O4  O 0 1 N N N -15.540 31.343 -2.922 3.512  0.171  1.330  O   EDK 28 
EDK C2  C23 C 0 1 N N N -15.914 32.655 -3.362 3.570  1.582  1.545  C2  EDK 29 
EDK C1  C24 C 0 1 N N N -14.671 33.494 -3.251 5.015  2.062  1.392  C1  EDK 30 
EDK N   N3  N 0 1 N N N -14.311 33.699 -1.849 5.451  1.862  0.008  N   EDK 31 
EDK C   C25 C 0 1 N N N -13.392 32.785 -1.184 5.253  2.923  -0.983 C   EDK 32 
EDK C25 C26 C 0 1 Y N N -14.927 34.722 -1.060 6.054  0.667  -0.366 C25 EDK 33 
EDK C29 C27 C 0 1 Y N N -14.652 34.727 0.305  6.146  -0.375 0.552  C29 EDK 34 
EDK C28 C28 C 0 1 Y N N -15.193 35.751 1.064  6.748  -1.559 0.167  C28 EDK 35 
EDK C27 C29 C 0 1 Y N N -15.978 36.710 0.465  7.240  -1.662 -1.128 C27 EDK 36 
EDK C26 C30 C 0 1 Y N N -16.202 36.613 -0.897 7.116  -0.588 -1.986 C26 EDK 37 
EDK H1  H1  H 0 1 N N N -22.058 25.340 0.060  -4.383 -4.765 0.857  H1  EDK 38 
EDK H2  H2  H 0 1 N N N -15.189 28.958 -1.995 1.274  1.408  1.897  H2  EDK 39 
EDK H3  H3  H 0 1 N N N -16.961 27.297 -1.617 -0.935 0.337  2.079  H3  EDK 40 
EDK H4  H4  H 0 1 N N N -19.106 27.108 0.465  -2.593 -0.190 0.652  H4  EDK 41 
EDK H5  H5  H 0 1 N N N -20.327 27.511 -2.971 -1.426 -3.301 2.090  H5  EDK 42 
EDK H6  H6  H 0 1 N N N -19.169 26.521 -2.019 -2.158 -1.722 2.465  H6  EDK 43 
EDK H7  H7  H 0 1 N N N -20.851 28.855 -1.019 -1.578 -2.736 -0.353 H7  EDK 44 
EDK H8  H8  H 0 1 N N N -18.460 29.964 4.265  -2.986 2.115  -3.438 H8  EDK 45 
EDK H9  H9  H 0 1 N N N -20.827 30.381 4.763  -2.949 0.317  -5.109 H9  EDK 46 
EDK H10 H10 H 0 1 N N N -22.571 29.609 3.225  -2.703 -2.027 -4.408 H10 EDK 47 
EDK H11 H11 H 0 1 N N N -21.966 28.445 1.146  -2.481 -2.595 -2.029 H11 EDK 48 
EDK H12 H12 H 0 1 N N N -15.205 30.132 1.574  -5.147 0.563  -0.937 H12 EDK 49 
EDK H13 H13 H 0 1 N N N -13.385 30.791 3.087  -7.135 0.901  0.472  H13 EDK 50 
EDK H14 H14 H 0 1 N N N -13.481 30.191 5.471  -7.099 2.569  2.280  H14 EDK 51 
EDK H15 H15 H 0 1 N N N -15.401 28.931 6.342  -5.076 3.908  2.691  H15 EDK 52 
EDK H16 H16 H 0 1 N N N -17.218 28.249 4.838  -3.074 3.579  1.302  H16 EDK 53 
EDK H17 H17 H 0 1 N N N -19.809 29.912 -3.392 0.817  -3.446 1.178  H17 EDK 54 
EDK H18 H18 H 0 1 N N N -18.040 31.575 -3.788 3.030  -2.383 0.997  H18 EDK 55 
EDK H19 H19 H 0 1 N N N -16.709 33.062 -2.720 2.940  2.088  0.814  H19 EDK 56 
EDK H20 H20 H 0 1 N N N -16.264 32.624 -4.405 3.216  1.811  2.550  H20 EDK 57 
EDK H21 H21 H 0 1 N N N -13.843 32.984 -3.766 5.075  3.121  1.643  H21 EDK 58 
EDK H22 H22 H 0 1 N N N -14.851 34.471 -3.724 5.660  1.493  2.062  H22 EDK 59 
EDK H23 H23 H 0 1 N N N -13.247 33.104 -0.141 6.124  3.578  -0.995 H23 EDK 60 
EDK H24 H24 H 0 1 N N N -13.810 31.768 -1.202 5.119  2.479  -1.969 H24 EDK 61 
EDK H25 H25 H 0 1 N N N -12.424 32.793 -1.707 4.367  3.503  -0.722 H25 EDK 62 
EDK H26 H26 H 0 1 N N N -14.039 33.960 0.755  5.752  -0.261 1.551  H26 EDK 63 
EDK H27 H27 H 0 1 N N N -14.999 35.797 2.125  6.833  -2.385 0.858  H27 EDK 64 
EDK H28 H28 H 0 1 N N N -16.407 37.516 1.042  7.716  -2.573 -1.459 H28 EDK 65 
EDK H29 H29 H 0 1 N N N -16.822 37.363 -1.367 7.497  -0.664 -2.993 H29 EDK 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EDK C2  C1  SING N N 1  
EDK C2  O   SING N N 2  
EDK C24 C23 DOUB Y N 3  
EDK C24 C3  SING Y N 4  
EDK C1  N   SING N N 5  
EDK C23 C6  SING Y N 6  
EDK O   C3  SING N N 7  
EDK C3  C4  DOUB Y N 8  
EDK C6  C7  SING N N 9  
EDK C6  C5  DOUB Y N 10 
EDK C4  C5  SING Y N 11 
EDK C7  C8  SING N N 12 
EDK N   C   SING N N 13 
EDK N   C25 SING N N 14 
EDK N2  C25 DOUB Y N 15 
EDK N2  C26 SING Y N 16 
EDK O2  C22 DOUB N N 17 
EDK C25 C29 SING Y N 18 
EDK C26 C27 DOUB Y N 19 
EDK C8  C22 SING N N 20 
EDK C8  N1  SING N N 21 
EDK C22 O3  SING N N 22 
EDK N1  C9  SING N N 23 
EDK C29 C28 DOUB Y N 24 
EDK C27 C28 SING Y N 25 
EDK O1  C15 DOUB N N 26 
EDK C9  C14 DOUB Y N 27 
EDK C9  C10 SING Y N 28 
EDK C14 C13 SING Y N 29 
EDK C15 C10 SING N N 30 
EDK C15 C16 SING N N 31 
EDK C10 C11 DOUB Y N 32 
EDK C21 C16 DOUB Y N 33 
EDK C21 C20 SING Y N 34 
EDK C13 C12 DOUB Y N 35 
EDK C16 C17 SING Y N 36 
EDK C20 C19 DOUB Y N 37 
EDK C11 C12 SING Y N 38 
EDK C17 C18 DOUB Y N 39 
EDK C19 C18 SING Y N 40 
EDK O3  H1  SING N N 41 
EDK C4  H2  SING N N 42 
EDK C5  H3  SING N N 43 
EDK N1  H4  SING N N 44 
EDK C7  H5  SING N N 45 
EDK C7  H6  SING N N 46 
EDK C8  H7  SING N N 47 
EDK C11 H8  SING N N 48 
EDK C12 H9  SING N N 49 
EDK C13 H10 SING N N 50 
EDK C14 H11 SING N N 51 
EDK C21 H12 SING N N 52 
EDK C20 H13 SING N N 53 
EDK C19 H14 SING N N 54 
EDK C18 H15 SING N N 55 
EDK C17 H16 SING N N 56 
EDK C23 H17 SING N N 57 
EDK C24 H18 SING N N 58 
EDK C2  H19 SING N N 59 
EDK C2  H20 SING N N 60 
EDK C1  H21 SING N N 61 
EDK C1  H22 SING N N 62 
EDK C   H23 SING N N 63 
EDK C   H24 SING N N 64 
EDK C   H25 SING N N 65 
EDK C29 H26 SING N N 66 
EDK C28 H27 SING N N 67 
EDK C27 H28 SING N N 68 
EDK C26 H29 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EDK InChI            InChI                1.03  "InChI=1S/C30H29N3O4/c1-33(28-13-7-8-18-31-28)19-20-37-24-16-14-22(15-17-24)21-27(30(35)36)32-26-12-6-5-11-25(26)29(34)23-9-3-2-4-10-23/h2-18,27,32H,19-21H2,1H3,(H,35,36)/t27-/m0/s1" 
EDK InChIKey         InChI                1.03  QTQMRBZOBKYXCG-MHZLTWQESA-N                                                                                                                                                            
EDK SMILES_CANONICAL CACTVS               3.385 "CN(CCOc1ccc(C[C@H](Nc2ccccc2C(=O)c3ccccc3)C(O)=O)cc1)c4ccccn4"                                                                                                                        
EDK SMILES           CACTVS               3.385 "CN(CCOc1ccc(C[CH](Nc2ccccc2C(=O)c3ccccc3)C(O)=O)cc1)c4ccccn4"                                                                                                                         
EDK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN(CCOc1ccc(cc1)C[C@@H](C(=O)O)Nc2ccccc2C(=O)c3ccccc3)c4ccccn4"                                                                                                                       
EDK SMILES           "OpenEye OEToolkits" 2.0.6 "CN(CCOc1ccc(cc1)CC(C(=O)O)Nc2ccccc2C(=O)c3ccccc3)c4ccccn4"                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EDK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EDK "Create component" 2018-03-15 EBI  
EDK "Initial release"  2019-02-13 RCSB 
# 
