data_D3K
# 
_chem_comp.id                                    D3K 
_chem_comp.name                                  "(2~{R})-2-[(~{R})-[2-(2-methoxyethoxy)phenyl]-phenyl-methyl]pyrrolidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H25 N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-12-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        311.418 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D3K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6FAW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D3K C14 C1  C 0 1 Y N N N N N 7.302 -12.356 -8.630  -1.586 -0.127 -2.251 C14 D3K 1  
D3K C10 C2  C 0 1 Y N N N N N 3.482 -9.807  -7.332  -0.959 -1.541 1.721  C10 D3K 2  
D3K C13 C3  C 0 1 Y N N N N N 6.232 -11.458 -8.597  -1.784 -0.160 -0.883 C13 D3K 3  
D3K C11 C4  C 0 1 Y N N N N N 4.220 -10.935 -7.196  -0.153 -0.881 0.813  C11 D3K 4  
D3K C12 C5  C 0 1 N N R N N N 5.717 -10.977 -7.234  -0.691 0.300  0.047  C12 D3K 5  
D3K C01 C6  C 0 1 N N N N N N 7.834 -15.379 -6.067  4.839  1.910  -1.891 C01 D3K 6  
D3K C03 C7  C 0 1 N N N N N N 5.431 -15.289 -6.052  4.013  -0.304 -1.485 C03 D3K 7  
D3K C04 C8  C 0 1 N N N N N N 4.252 -14.305 -5.865  3.276  -1.152 -0.446 C04 D3K 8  
D3K C06 C9  C 0 1 Y N N N N N 3.545 -12.201 -6.947  1.151  -1.306 0.607  C06 D3K 9  
D3K C07 C10 C 0 1 Y N N N N N 2.189 -12.254 -6.867  1.643  -2.394 1.314  C07 D3K 10 
D3K C08 C11 C 0 1 Y N N N N N 1.446 -11.082 -6.996  0.834  -3.050 2.221  C08 D3K 11 
D3K C09 C12 C 0 1 Y N N N N N 2.068 -9.826  -7.228  -0.466 -2.624 2.425  C09 D3K 12 
D3K C15 C13 C 0 1 Y N N N N N 7.793 -12.826 -9.872  -2.591 -0.544 -3.105 C15 D3K 13 
D3K C16 C14 C 0 1 Y N N N N N 7.236 -12.352 -11.049 -3.793 -0.992 -2.590 C16 D3K 14 
D3K C17 C15 C 0 1 Y N N N N N 6.157 -11.478 -11.028 -3.991 -1.024 -1.223 C17 D3K 15 
D3K C18 C16 C 0 1 Y N N N N N 5.661 -11.012 -9.777  -2.984 -0.613 -0.369 C18 D3K 16 
D3K C19 C17 C 0 1 N N R N N N 6.398 -9.600  -6.861  -1.256 1.330  1.027  C19 D3K 17 
D3K C21 C18 C 0 1 N N N N N N 8.138 -10.111 -5.242  -1.459 3.718  1.092  C21 D3K 18 
D3K C22 C19 C 0 1 N N N N N N 6.949 -9.986  -4.554  -0.711 3.254  2.361  C22 D3K 19 
D3K C23 C20 C 0 1 N N N N N N 6.007 -9.169  -5.410  -0.131 1.878  1.941  C23 D3K 20 
D3K N20 N1  N 0 1 N N N N N N 7.734 -9.755  -6.763  -1.760 2.513  0.298  N20 D3K 21 
D3K O02 O1  O 0 1 N N N N N N 6.700 -14.601 -5.820  4.160  1.030  -0.993 O02 D3K 22 
D3K O05 O2  O 0 1 N N N N N N 4.419 -13.309 -6.849  1.945  -0.659 -0.286 O05 D3K 23 
D3K H1  H1  H 0 1 N N N N N N 7.754 -12.691 -7.708  -0.649 0.228  -2.653 H1  D3K 24 
D3K H2  H2  H 0 1 N N N N N N 3.983 -8.870  -7.524  -1.973 -1.207 1.885  H2  D3K 25 
D3K H3  H3  H 0 1 N N N N N N 6.050 -11.708 -6.483  0.113  0.754  -0.533 H3  D3K 26 
D3K H4  H4  H 0 1 N N N N N N 8.738 -14.784 -5.868  4.910  2.901  -1.445 H4  D3K 27 
D3K H5  H5  H 0 1 N N N N N N 7.823 -16.261 -5.410  5.840  1.527  -2.088 H5  D3K 28 
D3K H6  H6  H 0 1 N N N N N N 7.834 -15.704 -7.118  4.284  1.972  -2.828 H6  D3K 29 
D3K H7  H7  H 0 1 N N N N N N 5.330 -16.118 -5.336  4.997  -0.732 -1.673 H7  D3K 30 
D3K H8  H8  H 0 1 N N N N N N 5.414 -15.686 -7.078  3.441  -0.287 -2.413 H8  D3K 31 
D3K H9  H9  H 0 1 N N N N N N 4.282 -13.859 -4.860  3.242  -2.188 -0.782 H9  D3K 32 
D3K H10 H10 H 0 1 N N N N N N 3.293 -14.825 -6.006  3.802  -1.096 0.507  H10 D3K 33 
D3K H11 H11 H 0 1 N N N N N N 1.691 -13.198 -6.705  2.658  -2.727 1.156  H11 D3K 34 
D3K H12 H12 H 0 1 N N N N N N 0.370 -11.130 -6.918  1.216  -3.897 2.772  H12 D3K 35 
D3K H13 H13 H 0 1 N N N N N N 1.486 -8.921  -7.322  -1.097 -3.138 3.134  H13 D3K 36 
D3K H14 H14 H 0 1 N N N N N N 8.595 -13.548 -9.902  -2.437 -0.518 -4.173 H14 D3K 37 
D3K H15 H15 H 0 1 N N N N N N 7.647 -12.667 -11.997 -4.580 -1.313 -3.257 H15 D3K 38 
D3K H16 H16 H 0 1 N N N N N N 5.699 -11.155 -11.951 -4.930 -1.375 -0.821 H16 D3K 39 
D3K H17 H17 H 0 1 N N N N N N 4.840 -10.311 -9.749  -3.138 -0.638 0.700  H17 D3K 40 
D3K H18 H18 H 0 1 N N N N N N 6.097 -8.825  -7.581  -2.051 0.886  1.626  H18 D3K 41 
D3K H19 H19 H 0 1 N N N N N N 8.528 -11.137 -5.169  -2.385 4.220  1.371  H19 D3K 42 
D3K H20 H20 H 0 1 N N N N N N 8.889 -9.405  -4.859  -0.828 4.396  0.517  H20 D3K 43 
D3K H21 H21 H 0 1 N N N N N N 7.123 -9.475  -3.595  0.090  3.950  2.612  H21 D3K 44 
D3K H22 H22 H 0 1 N N N N N N 6.518 -10.981 -4.367  -1.402 3.146  3.197  H22 D3K 45 
D3K H23 H23 H 0 1 N N N N N N 6.168 -8.091  -5.259  0.015  1.235  2.809  H23 D3K 46 
D3K H24 H24 H 0 1 N N N N N N 4.958 -9.417  -5.192  0.799  1.999  1.385  H24 D3K 47 
D3K H25 H25 H 0 1 N N N N N N 8.026 -10.497 -7.366  -1.349 2.573  -0.621 H25 D3K 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D3K C16 C17 DOUB Y N 1  
D3K C16 C15 SING Y N 2  
D3K C17 C18 SING Y N 3  
D3K C15 C14 DOUB Y N 4  
D3K C18 C13 DOUB Y N 5  
D3K C14 C13 SING Y N 6  
D3K C13 C12 SING N N 7  
D3K C10 C09 DOUB Y N 8  
D3K C10 C11 SING Y N 9  
D3K C12 C11 SING N N 10 
D3K C12 C19 SING N N 11 
D3K C09 C08 SING Y N 12 
D3K C11 C06 DOUB Y N 13 
D3K C08 C07 DOUB Y N 14 
D3K C06 C07 SING Y N 15 
D3K C06 O05 SING N N 16 
D3K C19 N20 SING N N 17 
D3K C19 C23 SING N N 18 
D3K O05 C04 SING N N 19 
D3K N20 C21 SING N N 20 
D3K C01 O02 SING N N 21 
D3K C03 C04 SING N N 22 
D3K C03 O02 SING N N 23 
D3K C23 C22 SING N N 24 
D3K C21 C22 SING N N 25 
D3K C14 H1  SING N N 26 
D3K C10 H2  SING N N 27 
D3K C12 H3  SING N N 28 
D3K C01 H4  SING N N 29 
D3K C01 H5  SING N N 30 
D3K C01 H6  SING N N 31 
D3K C03 H7  SING N N 32 
D3K C03 H8  SING N N 33 
D3K C04 H9  SING N N 34 
D3K C04 H10 SING N N 35 
D3K C07 H11 SING N N 36 
D3K C08 H12 SING N N 37 
D3K C09 H13 SING N N 38 
D3K C15 H14 SING N N 39 
D3K C16 H15 SING N N 40 
D3K C17 H16 SING N N 41 
D3K C18 H17 SING N N 42 
D3K C19 H18 SING N N 43 
D3K C21 H19 SING N N 44 
D3K C21 H20 SING N N 45 
D3K C22 H21 SING N N 46 
D3K C22 H22 SING N N 47 
D3K C23 H23 SING N N 48 
D3K C23 H24 SING N N 49 
D3K N20 H25 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D3K InChI            InChI                1.03  "InChI=1S/C20H25NO2/c1-22-14-15-23-19-12-6-5-10-17(19)20(18-11-7-13-21-18)16-8-3-2-4-9-16/h2-6,8-10,12,18,20-21H,7,11,13-15H2,1H3/t18-,20-/m1/s1" 
D3K InChIKey         InChI                1.03  ZARLKYUJYNEEOE-UYAOXDASSA-N                                                                                                                       
D3K SMILES_CANONICAL CACTVS               3.385 "COCCOc1ccccc1[C@H]([C@H]2CCCN2)c3ccccc3"                                                                                                         
D3K SMILES           CACTVS               3.385 "COCCOc1ccccc1[CH]([CH]2CCCN2)c3ccccc3"                                                                                                           
D3K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COCCOc1ccccc1[C@@H](c2ccccc2)[C@H]3CCCN3"                                                                                                        
D3K SMILES           "OpenEye OEToolkits" 2.0.6 "COCCOc1ccccc1C(c2ccccc2)C3CCCN3"                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           D3K 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-[(~{R})-[2-(2-methoxyethoxy)phenyl]-phenyl-methyl]pyrrolidine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D3K "Create component" 2017-12-18 EBI  
D3K "Initial release"  2018-05-16 RCSB 
D3K "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            D3K 
_pdbx_chem_comp_pcm.modified_residue_id                GLY 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               C-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               N20 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   C 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
