data_C3K
# 
_chem_comp.id                                    C3K 
_chem_comp.name                                  "(3~{S},6~{S},7~{R},9~{a}~{S})-6-[[(2~{S})-2-(methylamino)propanoyl]amino]-5-oxidanylidene-~{N}-(phenylmethyl)-7-[(propanoylamino)methyl]-3,6,7,8,9,9~{a}-hexahydropyrrolo[1,2-a]azepine-3-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H35 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-11-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        469.577 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C3K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6EXW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C3K CAB C1  C 0 1 N N N N N N 16.455 -16.879 -12.513 0.081  5.925  -0.189 CAB C3K 1  
C3K N   N1  N 0 1 N N N N N N 17.708 -16.524 -13.227 -0.176 4.493  -0.395 N   C3K 2  
C3K CA  C2  C 0 1 N N S N N N 18.188 -17.671 -14.036 0.866  3.674  0.240  CA  C3K 3  
C3K CB  C3  C 0 1 N N N N N N 19.191 -17.252 -15.101 0.517  3.458  1.714  CB  C3K 4  
C3K C   C4  C 0 1 N N N N N N 18.901 -18.586 -13.116 0.952  2.341  -0.457 C   C3K 5  
C3K O   O1  O 0 1 N N N N N N 19.352 -18.078 -12.100 0.218  2.097  -1.391 O   C3K 6  
C3K NAW N2  N 0 1 N N N N N N 19.070 -19.867 -13.440 1.845  1.420  -0.043 NAW C3K 7  
C3K CBG C5  C 0 1 N N S N N N 20.026 -20.586 -12.640 1.928  0.124  -0.720 CBG C3K 8  
C3K CBA C6  C 0 1 N N N N N N 20.794 -21.458 -13.543 0.580  -0.546 -0.682 CBA C3K 9  
C3K OAG O2  O 0 1 N N N N N N 20.463 -21.510 -14.724 -0.045 -0.668 -1.715 OAG C3K 10 
C3K NBH N3  N 0 1 N N N N N N 21.878 -22.021 -13.028 0.051  -1.011 0.448  NBH C3K 11 
C3K CBD C7  C 0 1 N N R N N N 19.441 -21.235 -11.364 2.974  -0.746 -0.021 CBD C3K 12 
C3K CAS C8  C 0 1 N N N N N N 17.944 -21.057 -11.198 4.341  -0.519 -0.670 CAS C3K 13 
C3K NAV N4  N 0 1 N N N N N N 17.623 -21.304 -9.813  5.319  -1.438 -0.082 NAV C3K 14 
C3K CAX C9  C 0 1 N N N N N N 16.397 -21.086 -9.378  6.599  -1.417 -0.502 CAX C3K 15 
C3K OAD O3  O 0 1 N N N N N N 15.581 -20.537 -10.074 6.942  -0.638 -1.366 OAD C3K 16 
C3K CAH C10 C 0 1 N N N N N N 16.041 -21.672 -8.021  7.606  -2.363 0.102  CAH C3K 17 
C3K CAA C11 C 0 1 N N N N N N 16.017 -23.199 -8.096  8.973  -2.135 -0.546 CAA C3K 18 
C3K CAN C12 C 0 1 N N N N N N 19.796 -22.704 -11.218 3.046  -0.377 1.465  CAN C3K 19 
C3K CAO C13 C 0 1 N N N N N N 21.251 -22.801 -10.778 1.663  0.042  1.961  CAO C3K 20 
C3K CBE C14 C 0 1 N N S N N N 22.220 -21.951 -11.606 0.696  -1.122 1.763  CBE C3K 21 
C3K CAP C15 C 0 1 N N N N N N 23.637 -22.517 -11.585 -0.420 -1.080 2.774  CAP C3K 22 
C3K CAQ C16 C 0 1 N N N N N N 24.015 -22.902 -13.005 -1.566 -1.263 2.167  CAQ C3K 23 
C3K CBF C17 C 0 1 N N S N N N 22.820 -22.688 -13.904 -1.322 -1.483 0.690  CBF C3K 24 
C3K CAZ C18 C 0 1 N N N N N N 22.313 -23.992 -14.530 -2.302 -0.680 -0.126 CAZ C3K 25 
C3K OAF O4  O 0 1 N N N N N N 21.370 -24.613 -14.064 -1.904 0.209  -0.849 OAF C3K 26 
C3K NAU N5  N 0 1 N N N N N N 22.947 -24.364 -15.645 -3.621 -0.950 -0.054 NAU C3K 27 
C3K CAR C19 C 0 1 N N N N N N 22.648 -25.547 -16.401 -4.573 -0.169 -0.847 CAR C3K 28 
C3K CBB C20 C 0 1 Y N N N N N 22.724 -25.312 -17.892 -5.971 -0.667 -0.586 CBB C3K 29 
C3K CAL C21 C 0 1 Y N N N N N 23.448 -26.170 -18.700 -6.723 -0.115 0.434  CAL C3K 30 
C3K CAJ C22 C 0 1 Y N N N N N 23.504 -25.982 -20.091 -8.005 -0.572 0.673  CAJ C3K 31 
C3K CAI C23 C 0 1 Y N N N N N 22.822 -24.924 -20.658 -8.536 -1.582 -0.107 CAI C3K 32 
C3K CAK C24 C 0 1 Y N N N N N 22.085 -24.062 -19.835 -7.785 -2.134 -1.128 CAK C3K 33 
C3K CAM C25 C 0 1 Y N N N N N 22.044 -24.260 -18.461 -6.504 -1.673 -1.371 CAM C3K 34 
C3K H1  H1  H 0 1 N N N N N N 16.114 -16.018 -11.919 0.093  6.141  0.879  H1  C3K 35 
C3K H2  H2  H 0 1 N N N N N N 15.680 -17.149 -13.245 1.046  6.187  -0.624 H2  C3K 36 
C3K H3  H3  H 0 1 N N N N N N 16.643 -17.733 -11.846 -0.705 6.508  -0.669 H3  C3K 37 
C3K H4  H4  H 0 1 N N N N N N 18.409 -16.277 -12.558 -0.256 4.278  -1.377 H4  C3K 38 
C3K H6  H6  H 0 1 N N N N N N 17.339 -18.188 -14.507 1.826  4.186  0.166  H6  C3K 39 
C3K H7  H7  H 0 1 N N N N N N 19.514 -18.136 -15.670 0.455  4.422  2.218  H7  C3K 40 
C3K H8  H8  H 0 1 N N N N N N 18.720 -16.529 -15.783 -0.443 2.947  1.789  H8  C3K 41 
C3K H9  H9  H 0 1 N N N N N N 20.064 -16.787 -14.620 1.290  2.851  2.185  H9  C3K 42 
C3K H10 H10 H 0 1 N N N N N N 18.567 -20.300 -14.188 2.432  1.616  0.704  H10 C3K 43 
C3K H11 H11 H 0 1 N N N N N N 20.741 -19.835 -12.273 2.222  0.278  -1.758 H11 C3K 44 
C3K H12 H12 H 0 1 N N N N N N 19.911 -20.716 -10.516 2.697  -1.796 -0.121 H12 C3K 45 
C3K H13 H13 H 0 1 N N N N N N 17.656 -20.031 -11.472 4.269  -0.701 -1.742 H13 C3K 46 
C3K H14 H14 H 0 1 N N N N N N 17.408 -21.772 -11.840 4.658  0.509  -0.496 H14 C3K 47 
C3K H15 H15 H 0 1 N N N N N N 18.327 -21.639 -9.186  5.045  -2.061 0.609  H15 C3K 48 
C3K H16 H16 H 0 1 N N N N N N 16.791 -21.356 -7.281  7.677  -2.180 1.175  H16 C3K 49 
C3K H17 H17 H 0 1 N N N N N N 15.049 -21.307 -7.717  7.288  -3.391 -0.071 H17 C3K 50 
C3K H18 H18 H 0 1 N N N N N N 15.759 -23.611 -7.109  8.901  -2.317 -1.618 H18 C3K 51 
C3K H19 H19 H 0 1 N N N N N N 15.267 -23.518 -8.834  9.290  -1.107 -0.373 H19 C3K 52 
C3K H20 H20 H 0 1 N N N N N N 17.009 -23.567 -8.399  9.700  -2.819 -0.109 H20 C3K 53 
C3K H21 H21 H 0 1 N N N N N N 19.147 -23.171 -10.463 3.390  -1.239 2.037  H21 C3K 54 
C3K H22 H22 H 0 1 N N N N N N 19.664 -23.217 -12.182 3.745  0.449  1.600  H22 C3K 55 
C3K H23 H23 H 0 1 N N N N N N 21.564 -23.853 -10.854 1.716  0.297  3.019  H23 C3K 56 
C3K H24 H24 H 0 1 N N N N N N 21.316 -22.474 -9.730  1.318  0.907  1.393  H24 C3K 57 
C3K H25 H25 H 0 1 N N N N N N 22.218 -20.912 -11.246 1.227  -2.070 1.836  H25 C3K 58 
C3K H26 H26 H 0 1 N N N N N N 24.263 -22.625 -10.712 -0.294 -0.924 3.836  H26 C3K 59 
C3K H27 H27 H 0 1 N N N N N N 24.981 -23.269 -13.320 -2.534 -1.259 2.646  H27 C3K 60 
C3K H28 H28 H 0 1 N N N N N N 23.110 -22.005 -14.716 -1.406 -2.542 0.447  H28 C3K 61 
C3K H29 H29 H 0 1 N N N N N N 23.684 -23.775 -15.978 -3.939 -1.661 0.524  H29 C3K 62 
C3K H30 H30 H 0 1 N N N N N N 21.631 -25.881 -16.147 -4.503 0.882  -0.567 H30 C3K 63 
C3K H31 H31 H 0 1 N N N N N N 23.370 -26.332 -16.130 -4.340 -0.279 -1.906 H31 C3K 64 
C3K H32 H32 H 0 1 N N N N N N 23.979 -26.998 -18.254 -6.308 0.674  1.044  H32 C3K 65 
C3K H33 H33 H 0 1 N N N N N N 24.075 -26.658 -20.710 -8.592 -0.140 1.471  H33 C3K 66 
C3K H34 H34 H 0 1 N N N N N N 22.856 -24.762 -21.725 -9.538 -1.939 0.080  H34 C3K 67 
C3K H35 H35 H 0 1 N N N N N N 21.544 -23.236 -20.273 -8.199 -2.923 -1.737 H35 C3K 68 
C3K H36 H36 H 0 1 N N N N N N 21.476 -23.586 -17.837 -5.917 -2.104 -2.168 H36 C3K 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C3K CAI CAJ DOUB Y N 1  
C3K CAI CAK SING Y N 2  
C3K CAJ CAL SING Y N 3  
C3K CAK CAM DOUB Y N 4  
C3K CAL CBB DOUB Y N 5  
C3K CAM CBB SING Y N 6  
C3K CBB CAR SING N N 7  
C3K CAR NAU SING N N 8  
C3K NAU CAZ SING N N 9  
C3K CB  CA  SING N N 10 
C3K OAG CBA DOUB N N 11 
C3K CAZ OAF DOUB N N 12 
C3K CAZ CBF SING N N 13 
C3K CA  N   SING N N 14 
C3K CA  C   SING N N 15 
C3K CBF NBH SING N N 16 
C3K CBF CAQ SING N N 17 
C3K CBA NBH SING N N 18 
C3K CBA CBG SING N N 19 
C3K NAW C   SING N N 20 
C3K NAW CBG SING N N 21 
C3K N   CAB SING N N 22 
C3K C   O   DOUB N N 23 
C3K NBH CBE SING N N 24 
C3K CAQ CAP DOUB N N 25 
C3K CBG CBD SING N N 26 
C3K CBE CAP SING N N 27 
C3K CBE CAO SING N N 28 
C3K CBD CAN SING N N 29 
C3K CBD CAS SING N N 30 
C3K CAN CAO SING N N 31 
C3K CAS NAV SING N N 32 
C3K OAD CAX DOUB N N 33 
C3K NAV CAX SING N N 34 
C3K CAX CAH SING N N 35 
C3K CAA CAH SING N N 36 
C3K CAB H1  SING N N 37 
C3K CAB H2  SING N N 38 
C3K CAB H3  SING N N 39 
C3K N   H4  SING N N 40 
C3K CA  H6  SING N N 41 
C3K CB  H7  SING N N 42 
C3K CB  H8  SING N N 43 
C3K CB  H9  SING N N 44 
C3K NAW H10 SING N N 45 
C3K CBG H11 SING N N 46 
C3K CBD H12 SING N N 47 
C3K CAS H13 SING N N 48 
C3K CAS H14 SING N N 49 
C3K NAV H15 SING N N 50 
C3K CAH H16 SING N N 51 
C3K CAH H17 SING N N 52 
C3K CAA H18 SING N N 53 
C3K CAA H19 SING N N 54 
C3K CAA H20 SING N N 55 
C3K CAN H21 SING N N 56 
C3K CAN H22 SING N N 57 
C3K CAO H23 SING N N 58 
C3K CAO H24 SING N N 59 
C3K CBE H25 SING N N 60 
C3K CAP H26 SING N N 61 
C3K CAQ H27 SING N N 62 
C3K CBF H28 SING N N 63 
C3K NAU H29 SING N N 64 
C3K CAR H30 SING N N 65 
C3K CAR H31 SING N N 66 
C3K CAL H32 SING N N 67 
C3K CAJ H33 SING N N 68 
C3K CAI H34 SING N N 69 
C3K CAK H35 SING N N 70 
C3K CAM H36 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C3K InChI            InChI                1.03  "InChI=1S/C25H35N5O4/c1-4-21(31)27-15-18-10-11-19-12-13-20(24(33)28-14-17-8-6-5-7-9-17)30(19)25(34)22(18)29-23(32)16(2)26-3/h5-9,12-13,16,18-20,22,26H,4,10-11,14-15H2,1-3H3,(H,27,31)(H,28,33)(H,29,32)/t16-,18+,19-,20-,22-/m0/s1" 
C3K InChIKey         InChI                1.03  JUEBKGOOCOQQTH-ZFVOUSBOSA-N                                                                                                                                                                                                          
C3K SMILES_CANONICAL CACTVS               3.385 "CCC(=O)NC[C@H]1CC[C@H]2C=C[C@H](N2C(=O)[C@H]1NC(=O)[C@H](C)NC)C(=O)NCc3ccccc3"                                                                                                                                                      
C3K SMILES           CACTVS               3.385 "CCC(=O)NC[CH]1CC[CH]2C=C[CH](N2C(=O)[CH]1NC(=O)[CH](C)NC)C(=O)NCc3ccccc3"                                                                                                                                                           
C3K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)NC[C@H]1CC[C@H]2C=C[C@H](N2C(=O)[C@H]1NC(=O)[C@H](C)NC)C(=O)NCc3ccccc3"                                                                                                                                                      
C3K SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)NCC1CCC2C=CC(N2C(=O)C1NC(=O)C(C)NC)C(=O)NCc3ccccc3"                                                                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           C3K 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(3~{S},6~{S},7~{R},9~{a}~{S})-6-[[(2~{S})-2-(methylamino)propanoyl]amino]-5-oxidanylidene-~{N}-(phenylmethyl)-7-[(propanoylamino)methyl]-3,6,7,8,9,9~{a}-hexahydropyrrolo[1,2-a]azepine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C3K "Create component" 2017-11-10 EBI  
C3K "Initial release"  2018-08-08 RCSB 
C3K "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            C3K 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAA 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
