data_89K
# 
_chem_comp.id                                    89K 
_chem_comp.name                                  "N-[(2S)-3-cyclohexyl-1-oxidanylidene-1-[[(2S,3S)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H42 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-11-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        602.720 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     89K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7W34 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
89K O1  O1  O 0 1 N N N N N N -1.714  -19.039 21.043 0.133  -0.418 0.486  O1  89K 1  
89K C2  C1  C 0 1 N N N N N N -0.910  -18.389 21.613 0.389  0.767  0.493  C2  89K 2  
89K C3  C2  C 0 1 N N S N N N -1.141  -18.065 23.100 1.813  1.232  0.329  C3  89K 3  
89K C4  C3  C 0 1 N N N N N N -0.357  -19.021 23.993 1.921  2.117  -0.914 C4  89K 4  
89K C5  C4  C 0 1 N N N N N N -0.123  -18.606 25.459 3.336  2.690  -1.012 C5  89K 5  
89K C6  C5  C 0 1 N N N N N N -0.356  -17.112 25.692 3.481  3.472  -2.319 C6  89K 6  
89K C7  C6  C 0 1 N N N N N N -0.223  -16.663 27.149 4.896  4.045  -2.416 C7  89K 7  
89K C8  C7  C 0 1 N N N N N N -0.310  -17.783 28.181 5.150  4.979  -1.232 C8  89K 8  
89K C9  C8  C 0 1 N N N N N N -1.228  -18.934 27.779 5.005  4.197  0.075  C9  89K 9  
89K C10 C9  C 0 1 N N N N N N -0.979  -19.491 26.374 3.590  3.624  0.173  C10 89K 10 
89K N11 N1  N 0 1 N N N N N N -2.556  -18.243 23.323 2.692  0.070  0.180  N11 89K 11 
89K C12 C10 C 0 1 N N N N N N -3.515  -17.440 22.587 3.994  0.162  0.517  C12 89K 12 
89K C13 C11 C 0 1 Y N N N N N -5.003  -17.660 22.823 4.876  -1.004 0.367  C13 89K 13 
89K C14 C12 C 0 1 Y N N N N N -6.048  -16.864 22.361 6.198  -1.029 0.678  C14 89K 14 
89K C15 C13 C 0 1 Y N N N N N -7.283  -17.462 22.818 6.661  -2.381 0.370  C15 89K 15 
89K C16 C14 C 0 1 Y N N N N N -8.655  -17.159 22.700 7.892  -3.034 0.464  C16 89K 16 
89K C17 C15 C 0 1 Y N N N N N -9.606  -17.991 23.292 7.996  -4.342 0.083  C17 89K 17 
89K C18 C16 C 0 1 Y N N N N N -9.201  -19.121 24.000 6.887  -5.025 -0.397 C18 89K 18 
89K C19 C17 C 0 1 Y N N N N N -7.853  -19.420 24.117 5.663  -4.399 -0.498 C19 89K 19 
89K C20 C18 C 0 1 Y N N N N N -6.886  -18.574 23.515 5.533  -3.069 -0.116 C20 89K 20 
89K O21 O2  O 0 1 Y N N N N N -5.526  -18.669 23.500 4.493  -2.213 -0.096 O21 89K 21 
89K O22 O3  O 0 1 N N N N N N -3.154  -16.628 21.803 4.439  1.211  0.945  O22 89K 22 
89K N23 N2  N 0 1 N N N N N N 0.264   -17.902 20.893 -0.602 1.669  0.642  N23 89K 23 
89K C24 C19 C 0 1 N N S N N N 0.439   -18.239 19.469 -1.997 1.224  0.685  C24 89K 24 
89K C25 C20 C 0 1 N N N N N N 0.253   -16.991 18.608 -2.391 0.918  2.131  C25 89K 25 
89K C26 C21 C 0 1 N N S N N N -1.260  -16.466 18.464 -3.751 0.218  2.152  C26 89K 26 
89K C27 C22 C 0 1 N N N N N N -1.915  -17.226 17.432 -4.234 0.087  3.599  C27 89K 27 
89K C28 C23 C 0 1 N N N N N N -1.902  -16.611 16.117 -5.448 -0.849 3.622  C28 89K 28 
89K C29 C24 C 0 1 N N N N N N -2.603  -15.319 16.130 -4.984 -2.260 3.258  C29 89K 29 
89K N30 N3  N 0 1 N N N N N N -1.867  -14.305 16.999 -4.198 -2.238 2.031  N30 89K 30 
89K C31 C25 C 0 1 N N N N N N -1.157  -14.893 18.221 -3.620 -1.145 1.534  C31 89K 31 
89K O32 O4  O 0 1 N N N N N N -0.554  -14.196 18.964 -2.955 -1.255 0.526  O32 89K 32 
89K C33 C26 C 0 1 N N S N N N 1.832   -18.836 19.257 -2.901 2.328  0.133  C33 89K 33 
89K O34 O5  O 0 1 N N N N N N 2.844   -17.901 19.490 -2.928 3.424  1.049  O34 89K 34 
89K C35 C27 C 0 1 N N N N N N 1.943   -19.535 17.886 -4.297 1.790  -0.049 C35 89K 35 
89K N36 N4  N 0 1 N N N N N N 2.632   -19.037 16.693 -4.518 0.755  -0.883 N36 89K 36 
89K C37 C28 C 0 1 N N N N N N 3.309   -17.761 16.552 -5.875 0.232  -1.059 C37 89K 37 
89K C38 C29 C 0 1 Y N N N N N 2.889   -17.350 15.138 -5.848 -0.914 -2.037 C38 89K 38 
89K C39 C30 C 0 1 Y N N N N N 3.496   -17.955 14.042 -5.658 -2.206 -1.582 C39 89K 39 
89K C40 C31 C 0 1 Y N N N N N 3.108   -17.609 12.754 -5.634 -3.258 -2.479 C40 89K 40 
89K C41 C32 C 0 1 Y N N N N N 2.104   -16.677 12.563 -5.799 -3.018 -3.830 C41 89K 41 
89K C42 C33 C 0 1 Y N N N N N 1.486   -16.087 13.660 -5.989 -1.726 -4.285 C42 89K 42 
89K C43 C34 C 0 1 Y N N N N N 1.873   -16.431 14.949 -6.020 -0.675 -3.388 C43 89K 43 
89K O44 O6  O 0 1 N N N N N N 1.435   -20.599 17.783 -5.223 2.289  0.557  O44 89K 44 
89K H1  H1  H 0 1 N N N N N N -0.836  -17.028 23.305 2.112  1.804  1.208  H1  89K 45 
89K H2  H2  H 0 1 N N N N N N -0.900  -19.978 24.005 1.707  1.522  -1.803 H2  89K 46 
89K H3  H3  H 0 1 N N N N N N 0.631   -19.166 23.531 1.202  2.934  -0.843 H3  89K 47 
89K H4  H4  H 0 1 N N N N N N 0.931   -18.815 25.693 4.060  1.875  -0.994 H4  89K 48 
89K H5  H5  H 0 1 N N N N N N 0.378   -16.553 25.093 3.299  2.806  -3.162 H5  89K 49 
89K H6  H6  H 0 1 N N N N N N -1.372  -16.866 25.349 2.757  4.287  -2.337 H6  89K 50 
89K H7  H7  H 0 1 N N N N N N 0.752   -16.167 27.265 5.620  3.230  -2.398 H7  89K 51 
89K H8  H8  H 0 1 N N N N N N -1.028  -15.943 27.359 4.999  4.602  -3.347 H8  89K 52 
89K H9  H9  H 0 1 N N N N N N 0.701   -18.187 28.338 6.159  5.388  -1.301 H9  89K 53 
89K H10 H10 H 0 1 N N N N N N -0.685  -17.356 29.123 4.426  5.794  -1.250 H10 89K 54 
89K H11 H11 H 0 1 N N N N N N -2.267  -18.576 27.826 5.729  3.383  0.094  H11 89K 55 
89K H12 H12 H 0 1 N N N N N N -1.089  -19.752 28.501 5.187  4.863  0.919  H12 89K 56 
89K H13 H13 H 0 1 N N N N N N -1.955  -19.637 25.889 2.866  4.439  0.155  H13 89K 57 
89K H14 H14 H 0 1 N N N N N N -0.472  -20.462 26.478 3.487  3.067  1.104  H14 89K 58 
89K H15 H15 H 0 1 N N N N N N -2.876  -18.920 23.985 2.337  -0.766 -0.161 H15 89K 59 
89K H16 H16 H 0 1 N N N N N N -5.954  -15.965 21.770 6.787  -0.215 1.072  H16 89K 60 
89K H17 H17 H 0 1 N N N N N N -8.970  -16.283 22.152 8.758  -2.507 0.836  H17 89K 61 
89K H18 H18 H 0 1 N N N N N N -10.657 -17.759 23.201 8.947  -4.848 0.155  H18 89K 62 
89K H19 H19 H 0 1 N N N N N N -9.938  -19.764 24.458 6.984  -6.059 -0.695 H19 89K 63 
89K H20 H20 H 0 1 N N N N N N -7.539  -20.296 24.666 4.807  -4.941 -0.872 H20 89K 64 
89K H21 H21 H 0 1 N N N N N N 0.946   -17.342 21.364 -0.391 2.612  0.721  H21 89K 65 
89K H22 H22 H 0 1 N N N N N N -0.313  -18.986 19.175 -2.110 0.325  0.079  H22 89K 66 
89K H23 H23 H 0 1 N N N N N N 0.631   -17.216 17.600 -1.641 0.268  2.582  H23 89K 67 
89K H24 H24 H 0 1 N N N N N N 0.851   -16.182 19.051 -2.453 1.848  2.696  H24 89K 68 
89K H25 H25 H 0 1 N N N N N N -1.765  -16.628 19.428 -4.470 0.806  1.582  H25 89K 69 
89K H26 H26 H 0 1 N N N N N N -2.964  -17.373 17.730 -3.437 -0.329 4.215  H26 89K 70 
89K H27 H27 H 0 1 N N N N N N -1.414  -18.203 17.357 -4.519 1.068  3.980  H27 89K 71 
89K H28 H28 H 0 1 N N N N N N -2.399  -17.282 15.401 -5.886 -0.855 4.620  H28 89K 72 
89K H29 H29 H 0 1 N N N N N N -0.859  -16.451 15.806 -6.187 -0.508 2.897  H29 89K 73 
89K H30 H30 H 0 1 N N N N N N -2.665  -14.933 15.102 -4.376 -2.660 4.069  H30 89K 74 
89K H31 H31 H 0 1 N N N N N N -3.618  -15.465 16.529 -5.855 -2.900 3.116  H31 89K 75 
89K H32 H32 H 0 1 N N N N N N -1.849  -13.328 16.786 -4.087 -3.071 1.546  H32 89K 76 
89K H33 H33 H 0 1 N N N N N N 1.937   -19.632 20.009 -2.515 2.668  -0.828 H33 89K 77 
89K H34 H34 H 0 1 N N N N N N 2.721   -17.507 20.346 -3.262 3.195  1.927  H34 89K 78 
89K H35 H35 H 0 1 N N N N N N 2.636   -19.638 15.894 -3.777 0.356  -1.367 H35 89K 79 
89K H36 H36 H 0 1 N N N N N N 4.400   -17.874 16.631 -6.257 -0.117 -0.100 H36 89K 80 
89K H37 H37 H 0 1 N N N N N N 2.960   -17.036 17.302 -6.521 1.022  -1.442 H37 89K 81 
89K H38 H38 H 0 1 N N N N N N 4.269   -18.694 14.193 -5.529 -2.393 -0.527 H38 89K 82 
89K H39 H39 H 0 1 N N N N N N 3.590   -18.067 11.903 -5.485 -4.267 -2.124 H39 89K 83 
89K H40 H40 H 0 1 N N N N N N 1.800   -16.408 11.562 -5.779 -3.839 -4.531 H40 89K 84 
89K H41 H41 H 0 1 N N N N N N 0.703   -15.359 13.509 -6.118 -1.539 -5.341 H41 89K 85 
89K H42 H42 H 0 1 N N N N N N 1.382   -15.983 15.800 -6.168 0.334  -3.743 H42 89K 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
89K C41 C40 DOUB Y N 1  
89K C41 C42 SING Y N 2  
89K C40 C39 SING Y N 3  
89K C42 C43 DOUB Y N 4  
89K C39 C38 DOUB Y N 5  
89K C43 C38 SING Y N 6  
89K C38 C37 SING N N 7  
89K C28 C29 SING N N 8  
89K C28 C27 SING N N 9  
89K C29 N30 SING N N 10 
89K C37 N36 SING N N 11 
89K N36 C35 SING N N 12 
89K N30 C31 SING N N 13 
89K C27 C26 SING N N 14 
89K O44 C35 DOUB N N 15 
89K C35 C33 SING N N 16 
89K C31 C26 SING N N 17 
89K C31 O32 DOUB N N 18 
89K C26 C25 SING N N 19 
89K C25 C24 SING N N 20 
89K C33 C24 SING N N 21 
89K C33 O34 SING N N 22 
89K C24 N23 SING N N 23 
89K N23 C2  SING N N 24 
89K O1  C2  DOUB N N 25 
89K C2  C3  SING N N 26 
89K O22 C12 DOUB N N 27 
89K C14 C15 SING Y N 28 
89K C14 C13 DOUB Y N 29 
89K C12 C13 SING N N 30 
89K C12 N11 SING N N 31 
89K C16 C15 DOUB Y N 32 
89K C16 C17 SING Y N 33 
89K C15 C20 SING Y N 34 
89K C13 O21 SING Y N 35 
89K C3  N11 SING N N 36 
89K C3  C4  SING N N 37 
89K C17 C18 DOUB Y N 38 
89K O21 C20 SING Y N 39 
89K C20 C19 DOUB Y N 40 
89K C4  C5  SING N N 41 
89K C18 C19 SING Y N 42 
89K C5  C6  SING N N 43 
89K C5  C10 SING N N 44 
89K C6  C7  SING N N 45 
89K C10 C9  SING N N 46 
89K C7  C8  SING N N 47 
89K C9  C8  SING N N 48 
89K C3  H1  SING N N 49 
89K C4  H2  SING N N 50 
89K C4  H3  SING N N 51 
89K C5  H4  SING N N 52 
89K C6  H5  SING N N 53 
89K C6  H6  SING N N 54 
89K C7  H7  SING N N 55 
89K C7  H8  SING N N 56 
89K C8  H9  SING N N 57 
89K C8  H10 SING N N 58 
89K C9  H11 SING N N 59 
89K C9  H12 SING N N 60 
89K C10 H13 SING N N 61 
89K C10 H14 SING N N 62 
89K N11 H15 SING N N 63 
89K C14 H16 SING N N 64 
89K C16 H17 SING N N 65 
89K C17 H18 SING N N 66 
89K C18 H19 SING N N 67 
89K C19 H20 SING N N 68 
89K N23 H21 SING N N 69 
89K C24 H22 SING N N 70 
89K C25 H23 SING N N 71 
89K C25 H24 SING N N 72 
89K C26 H25 SING N N 73 
89K C27 H26 SING N N 74 
89K C27 H27 SING N N 75 
89K C28 H28 SING N N 76 
89K C28 H29 SING N N 77 
89K C29 H30 SING N N 78 
89K C29 H31 SING N N 79 
89K N30 H32 SING N N 80 
89K C33 H33 SING N N 81 
89K O34 H34 SING N N 82 
89K N36 H35 SING N N 83 
89K C37 H36 SING N N 84 
89K C37 H37 SING N N 85 
89K C39 H38 SING N N 86 
89K C40 H39 SING N N 87 
89K C41 H40 SING N N 88 
89K C42 H41 SING N N 89 
89K C43 H42 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
89K InChI            InChI                1.03  "InChI=1S/C34H42N4O6/c39-30(34(43)36-21-23-12-5-2-6-13-23)26(19-25-15-9-17-35-31(25)40)37-32(41)27(18-22-10-3-1-4-11-22)38-33(42)29-20-24-14-7-8-16-28(24)44-29/h2,5-8,12-14,16,20,22,25-27,30,39H,1,3-4,9-11,15,17-19,21H2,(H,35,40)(H,36,43)(H,37,41)(H,38,42)/t25-,26-,27-,30-/m0/s1" 
89K InChIKey         InChI                1.03  QBWBVQMSMXVSSF-YRUYCOJQSA-N                                                                                                                                                                                                                                                              
89K SMILES_CANONICAL CACTVS               3.385 "O[C@@H]([C@H](C[C@@H]1CCCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)c3oc4ccccc4c3)C(=O)NCc5ccccc5"                                                                                                                                                                                               
89K SMILES           CACTVS               3.385 "O[CH]([CH](C[CH]1CCCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)c3oc4ccccc4c3)C(=O)NCc5ccccc5"                                                                                                                                                                                                     
89K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)[C@H]([C@H](C[C@@H]2CCCNC2=O)NC(=O)[C@H](CC3CCCCC3)NC(=O)c4cc5ccccc5o4)O"                                                                                                                                                                                              
89K SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)C(C(CC2CCCNC2=O)NC(=O)C(CC3CCCCC3)NC(=O)c4cc5ccccc5o4)O"                                                                                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           89K 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
89K "Create component" 2021-11-30 PDBJ 
89K "Initial release"  2023-05-31 RCSB 
89K "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            89K 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C33 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
