data_YVJ
# 
_chem_comp.id                                    YVJ 
_chem_comp.name                                  "4-fluoro-D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H37 F N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-04-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        540.626 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YVJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7MB1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YVJ C10  C1  C 0 1 N N N N N N -8.119  -10.863 17.933 -4.100 -3.781 -0.337 C10  YVJ 1  
YVJ C13  C2  C 0 1 N N N N N N -9.813  -15.351 19.519 -4.648 -0.141 0.271  C13  YVJ 2  
YVJ C15  C3  C 0 1 N N N N N N -11.112 -17.494 18.859 -5.764 1.704  -0.954 C15  YVJ 3  
YVJ C20  C4  C 0 1 N N N N N N -13.209 -18.736 18.283 -7.111 3.415  -1.922 C20  YVJ 4  
YVJ C21  C5  C 0 1 N N N N N N -12.873 -18.564 16.780 -7.031 4.480  -3.017 C21  YVJ 5  
YVJ C22  C6  C 0 1 N N N N N N -9.839  -10.487 16.319 -5.065 -5.414 1.004  C22  YVJ 6  
YVJ C24  C7  C 0 1 Y N N N N N -12.926 -11.839 27.175 2.931  4.620  1.381  C24  YVJ 7  
YVJ C26  C8  C 0 1 Y N N N N N -14.168 -12.088 24.863 2.232  2.841  -0.061 C26  YVJ 8  
YVJ C28  C9  C 0 1 Y N N N N N -11.764 -13.099 25.135 0.750  3.663  1.630  C28  YVJ 9  
YVJ C01  C10 C 0 1 N N N N N N -12.361 -9.869  21.473 2.541  0.273  1.227  C01  YVJ 10 
YVJ C04  C11 C 0 1 N N S N N N -12.248 -12.225 22.118 0.133  0.506  0.935  C04  YVJ 11 
YVJ C05  C12 C 0 1 N N N N N N -13.027 -13.299 22.805 -0.038 1.807  0.148  C05  YVJ 12 
YVJ C07  C13 C 0 1 N N R N N N -10.088 -13.845 19.302 -3.360 -0.958 0.387  C07  YVJ 13 
YVJ C08  C14 C 0 1 N N N N N N -8.848  -13.066 18.814 -3.556 -2.078 1.411  C08  YVJ 14 
YVJ C09  C15 C 0 1 N N S N N N -9.233  -11.667 18.347 -4.608 -3.062 0.893  C09  YVJ 15 
YVJ C14  C16 C 0 1 N N N N N N -11.144 -16.136 19.657 -4.495 0.900  -0.840 C14  YVJ 16 
YVJ C18  C17 C 0 1 N N N N N N -11.880 -12.740 20.717 -0.987 -0.441 0.590  C18  YVJ 17 
YVJ C23  C18 C 0 1 N N N N N N -10.273 -11.629 17.258 -4.844 -4.192 1.923  C23  YVJ 18 
YVJ C25  C19 C 0 1 Y N N N N N -14.125 -11.596 26.304 3.193  3.751  0.338  C25  YVJ 19 
YVJ C27  C20 C 0 1 Y N N N N N -12.994 -12.853 24.290 1.010  2.799  0.583  C27  YVJ 20 
YVJ C29  C21 C 0 1 Y N N N N N -11.725 -12.607 26.594 1.711  4.574  2.029  C29  YVJ 21 
YVJ C30  C22 C 0 1 N N R N N N -13.250 -8.660  21.150 3.861  -0.359 0.871  C30  YVJ 22 
YVJ C32  C23 C 0 1 N N N N N N -14.105 -8.230  22.317 4.410  0.287  -0.402 C32  YVJ 23 
YVJ C33  C24 C 0 1 Y N N N N N -11.769 -6.725  25.924 7.974  -1.739 -1.605 C33  YVJ 24 
YVJ C34  C25 C 0 1 Y N N N N N -12.171 -8.188  25.828 8.049  -0.655 -0.746 C34  YVJ 25 
YVJ C35  C26 C 0 1 Y N N N N N -12.944 -8.669  24.623 6.896  -0.001 -0.357 C35  YVJ 26 
YVJ C36  C27 C 0 1 Y N N N N N -13.327 -7.723  23.523 5.667  -0.427 -0.827 C36  YVJ 27 
YVJ C37  C28 C 0 1 Y N N N N N -12.902 -6.269  23.614 5.591  -1.509 -1.685 C37  YVJ 28 
YVJ C38  C29 C 0 1 Y N N N N N -12.177 -5.769  24.831 6.744  -2.161 -2.079 C38  YVJ 29 
YVJ F39  F1  F 0 1 N N N N N N -11.104 -6.264  26.988 9.101  -2.379 -1.985 F39  YVJ 30 
YVJ N02  N1  N 0 1 N N N N N N -13.036 -11.044 21.905 1.417  -0.109 0.590  N02  YVJ 31 
YVJ N06  N2  N 0 1 N N N N N N -10.556 -13.290 20.561 -2.266 -0.085 0.822  N06  YVJ 32 
YVJ N11  N3  N 0 1 N N N N N N -8.472  -10.160 16.681 -4.369 -5.095 -0.248 N11  YVJ 33 
YVJ N31  N4  N 0 1 N N N N N N -12.394 -7.588  20.766 4.813  -0.157 1.972  N31  YVJ 34 
YVJ O03  O1  O 0 1 N N N N N N -11.184 -9.837  21.337 2.489  1.127  2.087  O03  YVJ 35 
YVJ O12  O2  O 0 1 N N N N N N -7.016  -10.778 18.461 -3.537 -3.249 -1.270 O12  YVJ 36 
YVJ O16  O3  O 0 1 N N N N N N -12.091 -18.520 19.161 -5.859 2.682  -1.869 O16  YVJ 37 
YVJ O17  O4  O 0 1 N N N N N N -10.276 -17.734 18.025 -6.696 1.469  -0.222 O17  YVJ 38 
YVJ O19  O5  O 0 1 N N N N N N -12.615 -12.668 19.770 -0.738 -1.523 0.103  O19  YVJ 39 
YVJ H1   H1  H 0 1 N N N N N N -9.250  -15.743 18.659 -5.479 -0.805 0.034  H1   YVJ 40 
YVJ H131 H2  H 0 0 N N N N N N -9.220  -15.481 20.436 -4.845 0.363  1.217  H131 YVJ 41 
YVJ H202 H3  H 0 0 N N N N N N -13.999 -18.017 18.545 -7.292 3.895  -0.960 H202 YVJ 42 
YVJ H201 H4  H 0 0 N N N N N N -13.579 -19.760 18.440 -7.926 2.726  -2.143 H201 YVJ 43 
YVJ H211 H5  H 0 0 N N N N N N -13.776 -18.745 16.179 -7.971 5.031  -3.057 H211 YVJ 44 
YVJ H213 H6  H 0 0 N N N N N N -12.512 -17.541 16.600 -6.216 5.169  -2.796 H213 YVJ 45 
YVJ H212 H7  H 0 0 N N N N N N -12.092 -19.284 16.494 -6.850 4.000  -3.979 H212 YVJ 46 
YVJ H221 H8  H 0 0 N N N N N N -10.490 -9.611  16.458 -4.641 -6.312 1.453  H221 YVJ 47 
YVJ H222 H9  H 0 0 N N N N N N -9.887  -10.817 15.271 -6.131 -5.551 0.818  H222 YVJ 48 
YVJ H241 H10 H 0 0 N N N N N N -12.907 -11.480 28.194 3.682  5.331  1.692  H241 YVJ 49 
YVJ H261 H11 H 0 0 N N N N N N -15.035 -11.891 24.251 2.436  2.162  -0.876 H261 YVJ 50 
YVJ H281 H12 H 0 0 N N N N N N -10.915 -13.619 24.716 -0.203 3.628  2.136  H281 YVJ 51 
YVJ H041 H13 H 0 0 N N N N N N -11.332 -11.996 22.682 0.110  0.723  2.003  H041 YVJ 52 
YVJ H051 H14 H 0 0 N N N N N N -14.059 -13.343 22.427 0.074  1.604  -0.917 H051 YVJ 53 
YVJ H052 H15 H 0 0 N N N N N N -12.547 -14.280 22.676 -1.029 2.219  0.337  H052 YVJ 54 
YVJ H071 H16 H 0 0 N N N N N N -10.878 -13.746 18.543 -3.115 -1.390 -0.583 H071 YVJ 55 
YVJ H082 H17 H 0 0 N N N N N N -8.387  -13.611 17.977 -2.612 -2.601 1.562  H082 YVJ 56 
YVJ H081 H18 H 0 0 N N N N N N -8.126  -12.984 19.640 -3.891 -1.652 2.356  H081 YVJ 57 
YVJ H091 H19 H 0 0 N N N N N N -9.683  -11.169 19.219 -5.540 -2.543 0.674  H091 YVJ 58 
YVJ H141 H20 H 0 0 N N N N N N -11.965 -15.515 19.269 -3.664 1.564  -0.602 H141 YVJ 59 
YVJ H142 H21 H 0 0 N N N N N N -11.320 -16.353 20.721 -4.298 0.395  -1.785 H142 YVJ 60 
YVJ H232 H22 H 0 0 N N N N N N -11.267 -11.422 17.682 -5.728 -3.994 2.528  H232 YVJ 61 
YVJ H231 H23 H 0 0 N N N N N N -10.297 -12.585 16.715 -3.965 -4.332 2.552  H231 YVJ 62 
YVJ H251 H24 H 0 0 N N N N N N -14.973 -11.062 26.707 4.148  3.784  -0.166 H251 YVJ 63 
YVJ H291 H25 H 0 0 N N N N N N -10.858 -12.800 27.208 1.508  5.249  2.847  H291 YVJ 64 
YVJ H301 H26 H 0 0 N N N N N N -13.909 -8.929  20.311 3.720  -1.427 0.705  H301 YVJ 65 
YVJ H321 H27 H 0 0 N N N N N N -14.771 -7.424  21.975 3.666  0.215  -1.196 H321 YVJ 66 
YVJ H322 H28 H 0 0 N N N N N N -14.708 -9.093  22.636 4.635  1.336  -0.210 H322 YVJ 67 
YVJ H341 H29 H 0 0 N N N N N N -11.906 -8.878  26.615 9.009  -0.322 -0.379 H341 YVJ 68 
YVJ H351 H30 H 0 0 N N N N N N -13.225 -9.709  24.552 6.954  0.844  0.313  H351 YVJ 69 
YVJ H371 H31 H 0 0 N N N N N N -13.121 -5.592  22.802 4.631  -1.841 -2.050 H371 YVJ 70 
YVJ H381 H32 H 0 0 N N N N N N -11.946 -4.718  24.924 6.684  -3.006 -2.749 H381 YVJ 71 
YVJ H021 H33 H 0 0 N N N N N N -14.025 -11.047 22.055 1.458  -0.791 -0.098 H021 YVJ 72 
YVJ H061 H34 H 0 0 N N N N N N -9.938  -13.289 21.347 -2.463 0.748  1.278  H061 YVJ 73 
YVJ H111 H35 H 0 0 N N N N N N -7.865  -9.555  16.165 -4.129 -5.750 -0.923 H111 YVJ 74 
YVJ H312 H36 H 0 0 N N N N N N -12.945 -6.782  20.548 5.686  -0.628 1.786  H312 YVJ 75 
YVJ H2   H37 H 0 1 N N N N N N -11.772 -7.373  21.519 4.962  0.825  2.146  H2   YVJ 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YVJ C22 N11  SING N N 1  
YVJ C22 C23  SING N N 2  
YVJ N11 C10  SING N N 3  
YVJ C21 C20  SING N N 4  
YVJ C23 C09  SING N N 5  
YVJ C10 C09  SING N N 6  
YVJ C10 O12  DOUB N N 7  
YVJ O17 C15  DOUB N N 8  
YVJ C20 O16  SING N N 9  
YVJ C09 C08  SING N N 10 
YVJ C08 C07  SING N N 11 
YVJ C15 O16  SING N N 12 
YVJ C15 C14  SING N N 13 
YVJ C07 C13  SING N N 14 
YVJ C07 N06  SING N N 15 
YVJ C13 C14  SING N N 16 
YVJ O19 C18  DOUB N N 17 
YVJ N06 C18  SING N N 18 
YVJ C18 C04  SING N N 19 
YVJ N31 C30  SING N N 20 
YVJ C30 C01  SING N N 21 
YVJ C30 C32  SING N N 22 
YVJ O03 C01  DOUB N N 23 
YVJ C01 N02  SING N N 24 
YVJ N02 C04  SING N N 25 
YVJ C04 C05  SING N N 26 
YVJ C32 C36  SING N N 27 
YVJ C05 C27  SING N N 28 
YVJ C36 C37  DOUB Y N 29 
YVJ C36 C35  SING Y N 30 
YVJ C37 C38  SING Y N 31 
YVJ C27 C26  DOUB Y N 32 
YVJ C27 C28  SING Y N 33 
YVJ C35 C34  DOUB Y N 34 
YVJ C38 C33  DOUB Y N 35 
YVJ C26 C25  SING Y N 36 
YVJ C28 C29  DOUB Y N 37 
YVJ C34 C33  SING Y N 38 
YVJ C33 F39  SING N N 39 
YVJ C25 C24  DOUB Y N 40 
YVJ C29 C24  SING Y N 41 
YVJ C13 H1   SING N N 42 
YVJ C13 H131 SING N N 43 
YVJ C20 H202 SING N N 44 
YVJ C20 H201 SING N N 45 
YVJ C21 H211 SING N N 46 
YVJ C21 H213 SING N N 47 
YVJ C21 H212 SING N N 48 
YVJ C22 H221 SING N N 49 
YVJ C22 H222 SING N N 50 
YVJ C24 H241 SING N N 51 
YVJ C26 H261 SING N N 52 
YVJ C28 H281 SING N N 53 
YVJ C04 H041 SING N N 54 
YVJ C05 H051 SING N N 55 
YVJ C05 H052 SING N N 56 
YVJ C07 H071 SING N N 57 
YVJ C08 H082 SING N N 58 
YVJ C08 H081 SING N N 59 
YVJ C09 H091 SING N N 60 
YVJ C14 H141 SING N N 61 
YVJ C14 H142 SING N N 62 
YVJ C23 H232 SING N N 63 
YVJ C23 H231 SING N N 64 
YVJ C25 H251 SING N N 65 
YVJ C29 H291 SING N N 66 
YVJ C30 H301 SING N N 67 
YVJ C32 H321 SING N N 68 
YVJ C32 H322 SING N N 69 
YVJ C34 H341 SING N N 70 
YVJ C35 H351 SING N N 71 
YVJ C37 H371 SING N N 72 
YVJ C38 H381 SING N N 73 
YVJ N02 H021 SING N N 74 
YVJ N06 H061 SING N N 75 
YVJ N11 H111 SING N N 76 
YVJ N31 H312 SING N N 77 
YVJ N31 H2   SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YVJ SMILES           ACDLabs              12.01 "Fc1ccc(cc1)CC(N)C(=O)NC(Cc1ccccc1)C(=O)NC(CC1CCNC1=O)CCC(=O)OCC"                                                                                                                                                                
YVJ InChI            InChI                1.03  "InChI=1S/C29H37FN4O5/c1-2-39-26(35)13-12-23(18-21-14-15-32-27(21)36)33-29(38)25(17-19-6-4-3-5-7-19)34-28(37)24(31)16-20-8-10-22(30)11-9-20/h3-11,21,23-25H,2,12-18,31H2,1H3,(H,32,36)(H,33,38)(H,34,37)/t21-,23+,24+,25-/m0/s1" 
YVJ InChIKey         InChI                1.03  NURFMZSCLLICCV-QVQNZMNRSA-N                                                                                                                                                                                                      
YVJ SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](N)Cc3ccc(F)cc3"                                                                                                                                               
YVJ SMILES           CACTVS               3.385 "CCOC(=O)CC[CH](C[CH]1CCNC1=O)NC(=O)[CH](Cc2ccccc2)NC(=O)[CH](N)Cc3ccc(F)cc3"                                                                                                                                                    
YVJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccccc2)NC(=O)[C@@H](Cc3ccc(cc3)F)N"                                                                                                                                              
YVJ SMILES           "OpenEye OEToolkits" 2.0.7 "CCOC(=O)CCC(CC1CCNC1=O)NC(=O)C(Cc2ccccc2)NC(=O)C(Cc3ccc(cc3)F)N"                                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YVJ "SYSTEMATIC NAME" ACDLabs              12.01 "4-fluoro-D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide"                                                     
YVJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "ethyl (4~{R})-4-[[(2~{S})-2-[[(2~{R})-2-azanyl-3-(4-fluorophenyl)propanoyl]amino]-3-phenyl-propanoyl]amino]-5-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]pentanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YVJ "Create component" 2021-04-01 RCSB 
YVJ "Initial release"  2022-10-12 RCSB 
YVJ "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YVJ 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C13 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
