data_WMJ
# 
_chem_comp.id                                    WMJ 
_chem_comp.name                                  "1-[[(2R,3S,5S)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl]-3-(4-nitrophenyl)urea" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H19 N5 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-10-24 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        405.362 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WMJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2YOH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WMJ OAD  OAD  O 0  1 N N N 12.426 3.708  30.018 6.206  -1.109 1.162  OAD  WMJ 1  
WMJ CAX  CAX  C 0  1 N N N 13.636 3.973  29.986 5.780  -0.077 0.680  CAX  WMJ 2  
WMJ NAQ  NAQ  N 0  1 N N N 14.412 3.517  28.924 6.641  0.892  0.319  NAQ  WMJ 3  
WMJ CAW  CAW  C 0  1 N N N 15.773 3.810  28.822 6.183  2.042  -0.217 CAW  WMJ 4  
WMJ OAC  OAC  O 0  1 N N N 16.411 3.366  27.864 6.962  2.920  -0.544 OAC  WMJ 5  
WMJ CAT  CAT  C 0  1 N N N 16.378 4.589  29.810 4.791  2.219  -0.398 CAT  WMJ 6  
WMJ CAA  CAA  C 0  1 N N N 17.860 4.933  29.714 4.254  3.494  -0.995 CAA  WMJ 7  
WMJ CAL  CAL  C 0  1 N N N 15.606 5.052  30.882 3.949  1.230  -0.028 CAL  WMJ 8  
WMJ NBC  NBC  N 0  1 N N N 14.232 4.740  30.976 4.454  0.076  0.509  NBC  WMJ 9  
WMJ CBA  CBA  C 0  1 N N S 13.407 5.188  32.140 3.542  -0.999 0.906  CBA  WMJ 10 
WMJ OAR  OAR  O 0  1 N N N 14.312 5.511  33.234 2.192  -0.629 0.601  OAR  WMJ 11 
WMJ CAN  CAN  C 0  1 N N N 12.532 6.382  31.848 3.865  -2.281 0.108  CAN  WMJ 12 
WMJ CAY  CAY  C 0  1 N N S 13.334 7.504  32.439 2.451  -2.851 -0.186 CAY  WMJ 13 
WMJ OAE  OAE  O 0  1 N N N 14.295 7.947  31.483 2.446  -3.621 -1.390 OAE  WMJ 14 
WMJ CAZ  CAZ  C 0  1 N N R 14.042 6.866  33.629 1.636  -1.544 -0.356 CAZ  WMJ 15 
WMJ CAM  CAM  C 0  1 N N N 13.089 6.803  34.853 0.158  -1.797 -0.054 CAM  WMJ 16 
WMJ NAO  NAO  N 0  1 N N N 12.949 8.153  35.433 -0.603 -0.563 -0.269 NAO  WMJ 17 
WMJ CAS  CAS  C 0  1 N N N 11.963 9.017  35.134 -1.934 -0.547 -0.063 CAS  WMJ 18 
WMJ OAB  OAB  O 0  1 N N N 11.091 8.792  34.320 -2.505 -1.557 0.303  OAB  WMJ 19 
WMJ NAP  NAP  N 0  1 N N N 12.009 10.154 35.794 -2.634 0.587  -0.262 NAP  WMJ 20 
WMJ CAU  CAU  C 0  1 Y N N 11.193 11.162 35.581 -4.029 0.577  -0.155 CAU  WMJ 21 
WMJ CAI  CAI  C 0  1 Y N N 11.188 12.160 36.540 -4.699 1.696  0.322  CAI  WMJ 22 
WMJ CAK  CAK  C 0  1 Y N N 10.378 13.268 36.378 -6.076 1.683  0.425  CAK  WMJ 23 
WMJ CAH  CAH  C 0  1 Y N N 10.440 11.280 34.410 -4.747 -0.550 -0.533 CAH  WMJ 24 
WMJ CAJ  CAJ  C 0  1 Y N N 9.621  12.409 34.240 -6.124 -0.557 -0.427 CAJ  WMJ 25 
WMJ CAV  CAV  C 0  1 Y N N 9.601  13.408 35.231 -6.788 0.557  0.054  CAV  WMJ 26 
WMJ NBB  NBB  N 1  1 N N N 8.853  14.508 35.141 -8.264 0.546  0.166  NBB  WMJ 27 
WMJ OAG  OAG  O -1 1 N N N 8.213  14.855 34.010 -8.850 1.528  0.585  OAG  WMJ 28 
WMJ OAF  OAF  O 0  1 N N N 8.735  15.278 36.250 -8.892 -0.445 -0.161 OAF  WMJ 29 
WMJ HAQ  HAQ  H 0  1 N N N 13.981 2.962  28.212 7.594  0.764  0.446  HAQ  WMJ 30 
WMJ HAA1 HAA1 H 0  0 N N N 18.151 5.549  30.578 5.082  4.163  -1.227 HAA1 WMJ 31 
WMJ HAA2 HAA2 H 0  0 N N N 18.452 4.006  29.709 3.706  3.264  -1.909 HAA2 WMJ 32 
WMJ HAA3 HAA3 H 0  0 N N N 18.047 5.492  28.785 3.585  3.976  -0.282 HAA3 WMJ 33 
WMJ HAL  HAL  H 0  1 N N N 16.068 5.657  31.648 2.884  1.347  -0.158 HAL  WMJ 34 
WMJ HBA  HBA  H 0  1 N N N 12.759 4.354  32.448 3.640  -1.192 1.974  HBA  WMJ 35 
WMJ HAN1 HAN1 H 0  0 N N N 12.389 6.519  30.766 4.387  -2.041 -0.818 HAN1 WMJ 36 
WMJ HAN2 HAN2 H 0  0 N N N 11.552 6.289  32.338 4.446  -2.978 0.713  HAN2 WMJ 37 
WMJ HAZ  HAZ  H 0  1 N N N 14.960 7.417  33.882 1.755  -1.153 -1.367 HAZ  WMJ 38 
WMJ HAY  HAY  H 0  1 N N N 12.678 8.321  32.773 2.081  -3.439 0.654  HAY  WMJ 39 
WMJ HAE  HAE  H 0  1 N N N 14.806 8.658  31.853 3.029  -4.392 -1.366 HAE  WMJ 40 
WMJ HAM1 HAM1 H 0  0 N N N 12.103 6.437  34.532 -0.220 -2.577 -0.714 HAM1 WMJ 41 
WMJ HAM2 HAM2 H 0  0 N N N 13.506 6.120  35.608 0.048  -2.114 0.984  HAM2 WMJ 42 
WMJ HAO  HAO  H 0  1 N N N 13.637 8.446  36.096 -0.147 0.242  -0.561 HAO  WMJ 43 
WMJ HAP  HAP  H 0  1 N N N 12.708 10.258 36.502 -2.170 1.411  -0.478 HAP  WMJ 44 
WMJ HAI  HAI  H 0  1 N N N 11.816 12.073 37.414 -4.143 2.575  0.613  HAI  WMJ 45 
WMJ HAH  HAH  H 0  1 N N N 10.487 10.516 33.648 -4.229 -1.420 -0.909 HAH  WMJ 46 
WMJ HAK  HAK  H 0  1 N N N 10.348 14.028 37.144 -6.598 2.552  0.797  HAK  WMJ 47 
WMJ HAJ  HAJ  H 0  1 N N N 9.011  12.509 33.355 -6.683 -1.433 -0.721 HAJ  WMJ 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WMJ OAD CAX  DOUB N N 1  
WMJ CAX NAQ  SING N N 2  
WMJ CAX NBC  SING N N 3  
WMJ NAQ CAW  SING N N 4  
WMJ CAW OAC  DOUB N N 5  
WMJ CAW CAT  SING N N 6  
WMJ CAT CAA  SING N N 7  
WMJ CAT CAL  DOUB N N 8  
WMJ CAL NBC  SING N N 9  
WMJ NBC CBA  SING N N 10 
WMJ CBA OAR  SING N N 11 
WMJ CBA CAN  SING N N 12 
WMJ OAR CAZ  SING N N 13 
WMJ CAN CAY  SING N N 14 
WMJ CAY OAE  SING N N 15 
WMJ CAY CAZ  SING N N 16 
WMJ CAZ CAM  SING N N 17 
WMJ CAM NAO  SING N N 18 
WMJ NAO CAS  SING N N 19 
WMJ CAS OAB  DOUB N N 20 
WMJ CAS NAP  SING N N 21 
WMJ NAP CAU  SING N N 22 
WMJ CAU CAI  SING Y N 23 
WMJ CAU CAH  DOUB Y N 24 
WMJ CAI CAK  DOUB Y N 25 
WMJ CAK CAV  SING Y N 26 
WMJ CAH CAJ  SING Y N 27 
WMJ CAJ CAV  DOUB Y N 28 
WMJ CAV NBB  SING N N 29 
WMJ NBB OAG  SING N N 30 
WMJ NBB OAF  DOUB N N 31 
WMJ NAQ HAQ  SING N N 32 
WMJ CAA HAA1 SING N N 33 
WMJ CAA HAA2 SING N N 34 
WMJ CAA HAA3 SING N N 35 
WMJ CAL HAL  SING N N 36 
WMJ CBA HBA  SING N N 37 
WMJ CAN HAN1 SING N N 38 
WMJ CAN HAN2 SING N N 39 
WMJ CAZ HAZ  SING N N 40 
WMJ CAY HAY  SING N N 41 
WMJ OAE HAE  SING N N 42 
WMJ CAM HAM1 SING N N 43 
WMJ CAM HAM2 SING N N 44 
WMJ NAO HAO  SING N N 45 
WMJ NAP HAP  SING N N 46 
WMJ CAI HAI  SING N N 47 
WMJ CAH HAH  SING N N 48 
WMJ CAK HAK  SING N N 49 
WMJ CAJ HAJ  SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WMJ SMILES           ACDLabs              12.01 "[O-][N+](=O)c1ccc(cc1)NC(=O)NCC3OC(N2C(=O)NC(=O)C(=C2)C)CC3O"                                                                                                                       
WMJ InChI            InChI                1.03  "InChI=1S/C17H19N5O7/c1-9-8-21(17(26)20-15(9)24)14-6-12(23)13(29-14)7-18-16(25)19-10-2-4-11(5-3-10)22(27)28/h2-5,8,12-14,23H,6-7H2,1H3,(H2,18,19,25)(H,20,24,26)/t12-,13+,14-/m0/s1" 
WMJ InChIKey         InChI                1.03  GGXGAHUHZPSFRR-MJBXVCDLSA-N                                                                                                                                                          
WMJ SMILES_CANONICAL CACTVS               3.385 "CC1=CN([C@@H]2C[C@H](O)[C@@H](CNC(=O)Nc3ccc(cc3)[N+]([O-])=O)O2)C(=O)NC1=O"                                                                                                         
WMJ SMILES           CACTVS               3.385 "CC1=CN([CH]2C[CH](O)[CH](CNC(=O)Nc3ccc(cc3)[N+]([O-])=O)O2)C(=O)NC1=O"                                                                                                              
WMJ SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC1=CN(C(=O)NC1=O)[C@@H]2C[C@@H]([C@H](O2)CNC(=O)Nc3ccc(cc3)[N+](=O)[O-])O"                                                                                                         
WMJ SMILES           "OpenEye OEToolkits" 1.9.2 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)CNC(=O)Nc3ccc(cc3)[N+](=O)[O-])O"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WMJ "SYSTEMATIC NAME" ACDLabs              12.01 "2',5'-dideoxy-5'-{[(4-nitrophenyl)carbamoyl]amino}-3,4-dihydrothymidine"                                               
WMJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "1-[[(2R,3S,5S)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl]-3-(4-nitrophenyl)urea" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WMJ "Create component"  2012-10-24 EBI  
WMJ "Initial release"   2013-07-24 RCSB 
WMJ "Modify descriptor" 2014-09-05 RCSB 
# 
