data_RNJ
#

_chem_comp.id                                   RNJ
_chem_comp.name                                 "(7S)-7-methyl-2-{[3-(piperidin-1-yl)propyl]sulfanyl}-7,8-dihydro[1]benzothieno[2,3-d]pyrimidin-4-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H26 N4 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-02-17
_chem_comp.pdbx_modified_date                   2020-05-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       374.567
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RNJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VUU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RNJ  C11  C1   C  0  1  N  N  N  20.665  -11.577  44.455   7.974   0.825   0.685  C11  RNJ   1  
RNJ  C12  C2   C  0  1  N  N  N  19.330  -11.751  44.974   8.882  -0.393   0.495  C12  RNJ   2  
RNJ  C13  C3   C  0  1  N  N  N  18.331  -11.716  43.918   8.385  -1.209  -0.702  C13  RNJ   3  
RNJ  C14  C4   C  0  1  N  N  N  18.426  -10.487  42.983   6.931  -1.621  -0.463  C14  RNJ   4  
RNJ  C16  C5   C  0  1  Y  N  N  19.481  -10.900  35.508  -2.555   1.259  -0.044  C16  RNJ   5  
RNJ  C17  C6   C  0  1  Y  N  N  20.708  -11.494  35.792  -2.739  -0.117   0.078  C17  RNJ   6  
RNJ  N01  N1   N  0  1  N  N  N  22.730  -11.523  37.267  -1.698  -2.310   0.217  N01  RNJ   7  
RNJ  C02  C7   C  0  1  Y  N  N  21.455  -11.000  36.881  -1.581  -0.937   0.097  C02  RNJ   8  
RNJ  N03  N2   N  0  1  Y  N  N  20.954  -10.012  37.576  -0.389  -0.372  -0.004  N03  RNJ   9  
RNJ  C04  C8   C  0  1  Y  N  N  19.775   -9.467  37.274  -0.262   0.945  -0.120  C04  RNJ  10  
RNJ  S05  S1   S  0  1  N  N  N  19.192   -8.072  38.237   1.352   1.641  -0.251  S05  RNJ  11  
RNJ  C06  C9   C  0  1  N  N  N  18.928   -8.462  39.990   2.352   0.134  -0.168  C06  RNJ  12  
RNJ  C07  C10  C  0  1  N  N  N  20.199   -8.686  40.794   3.834   0.501  -0.265  C07  RNJ  13  
RNJ  C08  C11  C  0  1  N  N  N  19.795   -8.938  42.262   4.680  -0.773  -0.196  C08  RNJ  14  
RNJ  N09  N3   N  0  1  N  N  N  19.777  -10.109  42.600   6.103  -0.421  -0.289  N09  RNJ  15  
RNJ  C10  C12  C  0  1  N  N  N  20.772  -10.282  43.643   6.531   0.354   0.883  C10  RNJ  16  
RNJ  N15  N4   N  0  1  Y  N  N  19.035   -9.891  36.267  -1.310   1.746  -0.142  N15  RNJ  17  
RNJ  C18  C13  C  0  1  Y  N  N  21.077  -12.630  34.854  -4.146  -0.484   0.168  C18  RNJ  18  
RNJ  C19  C14  C  0  1  Y  N  N  20.018  -12.802  33.898  -4.989   0.575   0.130  C19  RNJ  19  
RNJ  C20  C15  C  0  1  N  N  N  20.061  -13.860  32.807  -6.491   0.407   0.240  C20  RNJ  20  
RNJ  C21  C16  C  0  1  N  N  S  21.490  -14.246  32.457  -6.881  -0.930  -0.391  C21  RNJ  21  
RNJ  C22  C17  C  0  1  N  N  N  21.423  -15.569  31.720  -8.323  -1.262  -0.002  C22  RNJ  22  
RNJ  C23  C18  C  0  1  N  N  N  22.427  -14.462  33.641  -5.984  -2.045   0.061  C23  RNJ  23  
RNJ  C24  C19  C  0  1  N  N  N  22.333  -13.501  34.825  -4.691  -1.863   0.315  C24  RNJ  24  
RNJ  S25  S2   S  0  1  Y  N  N  18.812  -11.668  34.189  -4.110   2.078  -0.033  S25  RNJ  25  
RNJ  H1   H1   H  0  1  N  N  N  20.913  -12.430  43.807   8.297   1.387   1.561  H1   RNJ  26  
RNJ  H2   H2   H  0  1  N  N  N  21.375  -11.536  45.294   8.031   1.463  -0.198  H2   RNJ  27  
RNJ  H3   H3   H  0  1  N  N  N  19.119  -10.944  45.691   9.903  -0.060   0.310  H3   RNJ  28  
RNJ  H4   H4   H  0  1  N  N  N  19.271  -12.722  45.487   8.857  -1.010   1.393  H4   RNJ  29  
RNJ  H5   H5   H  0  1  N  N  N  17.336  -11.715  44.387   8.448  -0.604  -1.606  H5   RNJ  30  
RNJ  H6   H6   H  0  1  N  N  N  18.447  -12.623  43.306   9.003  -2.100  -0.817  H6   RNJ  31  
RNJ  H7   H7   H  0  1  N  N  N  17.965   -9.631  43.497   6.570  -2.190  -1.320  H7   RNJ  32  
RNJ  H8   H8   H  0  1  N  N  N  17.862  -10.712  42.066   6.871  -2.238   0.433  H8   RNJ  33  
RNJ  H9   H9   H  0  1  N  N  N  23.069  -11.022  38.063  -2.551  -2.741   0.050  H9   RNJ  34  
RNJ  H10  H10  H  0  1  N  N  N  22.637  -12.491  37.498  -0.927  -2.842   0.469  H10  RNJ  35  
RNJ  H11  H11  H  0  1  N  N  N  18.377   -7.626  40.447   2.164  -0.375   0.777  H11  RNJ  36  
RNJ  H12  H12  H  0  1  N  N  N  18.321   -9.377  40.049   2.085  -0.524  -0.995  H12  RNJ  37  
RNJ  H13  H13  H  0  1  N  N  N  20.741   -9.559  40.401   4.022   1.010  -1.211  H13  RNJ  38  
RNJ  H14  H14  H  0  1  N  N  N  20.842   -7.796  40.731   4.101   1.159   0.561  H14  RNJ  39  
RNJ  H15  H15  H  0  1  N  N  N  20.510   -8.408  42.908   4.492  -1.282   0.750  H15  RNJ  40  
RNJ  H16  H16  H  0  1  N  N  N  18.787   -8.524  42.414   4.413  -1.431  -1.022  H16  RNJ  41  
RNJ  H18  H18  H  0  1  N  N  N  21.765  -10.261  43.170   6.473  -0.272   1.773  H18  RNJ  42  
RNJ  H19  H19  H  0  1  N  N  N  20.680   -9.437  44.341   5.880   1.219   1.004  H19  RNJ  43  
RNJ  H20  H20  H  0  1  N  N  N  19.567  -13.465  31.907  -6.785   0.415   1.290  H20  RNJ  44  
RNJ  H21  H21  H  0  1  N  N  N  19.525  -14.755  33.156  -6.990   1.221  -0.286  H21  RNJ  45  
RNJ  H22  H22  H  0  1  N  N  N  21.919  -13.482  31.792  -6.820  -0.842  -1.476  H22  RNJ  46  
RNJ  H23  H23  H  0  1  N  N  N  22.439  -15.888  31.446  -8.987  -0.477  -0.363  H23  RNJ  47  
RNJ  H24  H24  H  0  1  N  N  N  20.963  -16.328  32.370  -8.609  -2.215  -0.448  H24  RNJ  48  
RNJ  H25  H25  H  0  1  N  N  N  20.818  -15.451  30.809  -8.400  -1.332   1.084  H25  RNJ  49  
RNJ  H26  H26  H  0  1  N  N  N  23.139  -15.274  33.642  -6.405  -3.030   0.193  H26  RNJ  50  
RNJ  H27  H27  H  0  1  N  N  N  23.098  -13.441  35.585  -4.057  -2.688   0.605  H27  RNJ  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RNJ  C22  C21  SING  N  N   1  
RNJ  C21  C20  SING  N  N   2  
RNJ  C21  C23  SING  N  N   3  
RNJ  C20  C19  SING  N  N   4  
RNJ  C23  C24  DOUB  N  N   5  
RNJ  C19  S25  SING  Y  N   6  
RNJ  C19  C18  DOUB  Y  N   7  
RNJ  S25  C16  SING  Y  N   8  
RNJ  C24  C18  SING  N  N   9  
RNJ  C18  C17  SING  Y  N  10  
RNJ  C16  C17  DOUB  Y  N  11  
RNJ  C16  N15  SING  Y  N  12  
RNJ  C17  C02  SING  Y  N  13  
RNJ  N15  C04  DOUB  Y  N  14  
RNJ  C02  N01  SING  N  N  15  
RNJ  C02  N03  DOUB  Y  N  16  
RNJ  C04  N03  SING  Y  N  17  
RNJ  C04  S05  SING  N  N  18  
RNJ  S05  C06  SING  N  N  19  
RNJ  C06  C07  SING  N  N  20  
RNJ  C07  C08  SING  N  N  21  
RNJ  C08  N09  SING  N  N  22  
RNJ  N09  C14  SING  N  N  23  
RNJ  N09  C10  SING  N  N  24  
RNJ  C14  C13  SING  N  N  25  
RNJ  C10  C11  SING  N  N  26  
RNJ  C13  C12  SING  N  N  27  
RNJ  C11  C12  SING  N  N  28  
RNJ  C11  H1   SING  N  N  29  
RNJ  C11  H2   SING  N  N  30  
RNJ  C12  H3   SING  N  N  31  
RNJ  C12  H4   SING  N  N  32  
RNJ  C13  H5   SING  N  N  33  
RNJ  C13  H6   SING  N  N  34  
RNJ  C14  H7   SING  N  N  35  
RNJ  C14  H8   SING  N  N  36  
RNJ  N01  H9   SING  N  N  37  
RNJ  N01  H10  SING  N  N  38  
RNJ  C06  H11  SING  N  N  39  
RNJ  C06  H12  SING  N  N  40  
RNJ  C07  H13  SING  N  N  41  
RNJ  C07  H14  SING  N  N  42  
RNJ  C08  H15  SING  N  N  43  
RNJ  C08  H16  SING  N  N  44  
RNJ  C10  H18  SING  N  N  45  
RNJ  C10  H19  SING  N  N  46  
RNJ  C20  H20  SING  N  N  47  
RNJ  C20  H21  SING  N  N  48  
RNJ  C21  H22  SING  N  N  49  
RNJ  C22  H23  SING  N  N  50  
RNJ  C22  H24  SING  N  N  51  
RNJ  C22  H25  SING  N  N  52  
RNJ  C23  H26  SING  N  N  53  
RNJ  C24  H27  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RNJ  SMILES            ACDLabs               12.01  "C4CCCN(CCCSc1nc(c2c(n1)sc3c2C=CC(C3)C)N)C4"  
RNJ  InChI             InChI                 1.03   "InChI=1S/C19H26N4S2/c1-13-6-7-14-15(12-13)25-18-16(14)17(20)21-19(22-18)24-11-5-10-23-8-3-2-4-9-23/h6-7,13H,2-5,8-12H2,1H3,(H2,20,21,22)/t13-/m1/s1"  
RNJ  InChIKey          InChI                 1.03   NTILTIMGUJTVAB-CYBMUJFWSA-N  
RNJ  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1Cc2sc3nc(SCCCN4CCCCC4)nc(N)c3c2C=C1"  
RNJ  SMILES            CACTVS                3.385  "C[CH]1Cc2sc3nc(SCCCN4CCCCC4)nc(N)c3c2C=C1"  
RNJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1Cc2c(c3c(nc(nc3s2)SCCCN4CCCCC4)N)C=C1"  
RNJ  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1Cc2c(c3c(nc(nc3s2)SCCCN4CCCCC4)N)C=C1"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RNJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "(7S)-7-methyl-2-{[3-(piperidin-1-yl)propyl]sulfanyl}-7,8-dihydro[1]benzothieno[2,3-d]pyrimidin-4-amine"  
RNJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(7~{S})-7-methyl-2-(3-piperidin-1-ylpropylsulfanyl)-7,8-dihydro-[1]benzothiolo[2,3-d]pyrimidin-4-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RNJ  "Create component"  2020-02-17  RCSB  
RNJ  "Initial release"   2020-06-03  RCSB  
##
