data_F3J
# 
_chem_comp.id                                    F3J 
_chem_comp.name                                  "11-cyclobutyl-2-({2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H42 N8 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-02-26 
_chem_comp.pdbx_modified_date                    2018-08-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        610.749 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F3J 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6CIY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F3J C1  C1  C 0 1 N N N -2.757 7.709  -4.720 -6.859  0.953  0.876  C1  F3J 1  
F3J C2  C2  C 0 1 N N N -1.750 8.326  -3.755 -5.880  1.662  1.816  C2  F3J 2  
F3J C3  C3  C 0 1 N N N -3.374 10.206 -3.728 -4.064  0.056  1.096  C3  F3J 3  
F3J C4  C4  C 0 1 N N N -4.202 9.023  -3.223 -5.064  -0.634 0.164  C4  F3J 4  
F3J C5  C5  C 0 1 N N N 1.063  9.019  -8.047 -1.026  4.644  -2.511 C5  F3J 5  
F3J C6  C6  C 0 1 N N N -0.964 10.627 -3.519 -3.682  2.474  1.106  C6  F3J 6  
F3J C7  C7  C 0 1 N N N 5.430  7.555  0.670  7.113   1.698  -0.366 C7  F3J 7  
F3J C11 C8  C 0 1 Y N N 0.419  10.249 -3.992 -2.343  2.238  0.534  C11 F3J 8  
F3J C12 C9  C 0 1 Y N N 0.608  9.857  -5.329 -1.872  3.046  -0.505 C12 F3J 9  
F3J C13 C10 C 0 1 Y N N 1.872  9.484  -5.784 -0.618  2.823  -1.037 C13 F3J 10 
F3J C14 C11 C 0 1 Y N N 3.027  9.509  -4.861 0.177   1.790  -0.536 C14 F3J 11 
F3J C15 C12 C 0 1 Y N N 2.813  9.926  -3.540 -0.291  0.987  0.497  C15 F3J 12 
F3J C16 C13 C 0 1 Y N N 1.519  10.283 -3.117 -1.540  1.210  1.035  C16 F3J 13 
F3J C17 C14 C 0 1 Y N N 5.279  8.503  -4.847 2.421   0.945  -0.310 C17 F3J 14 
F3J C18 C15 C 0 1 Y N N 7.237  7.197  -5.153 3.083   0.094  1.729  C18 F3J 15 
F3J C19 C16 C 0 1 Y N N 7.471  7.166  -3.776 4.312   -0.246 1.180  C19 F3J 16 
F3J C20 C17 C 0 1 Y N N 6.466  7.859  -2.931 4.532   0.028  -0.171 C20 F3J 17 
F3J C21 C18 C 0 1 Y N N 7.751  8.492  -1.048 6.050   -1.696 -0.848 C21 F3J 18 
F3J C22 C19 C 0 1 Y N N 7.692  9.608  -0.211 6.170   -2.327 -2.078 C22 F3J 19 
F3J C25 C20 C 0 1 Y N N 10.238 8.597  -0.890 6.457   -3.806 0.256  C25 F3J 20 
F3J O1  O1  O 0 1 N N N 10.382 6.184  -2.083 6.927   -2.151 2.495  O1  F3J 21 
F3J C27 C21 C 0 1 N N N 9.364  6.813  -2.316 6.143   -1.776 1.645  C27 F3J 22 
F3J N1  N1  N 0 1 N N N 8.570  6.434  -3.310 5.299   -0.812 1.985  N1  F3J 23 
F3J C28 C22 C 0 1 N N N 8.789  5.155  -3.995 5.417   -0.287 3.348  C28 F3J 24 
F3J N4  N2  N 0 1 Y N N 6.178  7.872  -5.636 2.171   0.675  0.962  N4  F3J 25 
F3J C26 C23 C 0 1 Y N N 9.106  7.992  -1.429 6.214   -2.431 0.334  C26 F3J 26 
F3J C24 C24 C 0 1 Y N N 10.113 9.687  -0.036 6.557   -4.421 -0.973 C24 F3J 27 
F3J C23 C25 C 0 1 Y N N 8.856  10.181 0.300  6.422   -3.683 -2.138 C23 F3J 28 
F3J N2  N3  N 0 1 N N N 6.522  8.023  -1.547 5.715   -0.346 -0.792 N2  F3J 29 
F3J C29 C26 C 0 1 N N N 5.287  8.092  -0.753 6.598   0.664  -1.380 C29 F3J 30 
F3J N3  N4  N 0 1 Y N N 5.443  8.509  -3.516 3.580   0.633  -0.873 N3  F3J 31 
F3J N5  N5  N 0 1 N N N 4.232  9.157  -5.408 1.444   1.564  -1.074 N5  F3J 32 
F3J C   C27 C 0 1 N N N -4.186 7.862  -4.212 -6.470  -0.522 0.757  C   F3J 33 
F3J C31 C28 C 0 1 N N N 4.251  7.016  -1.074 5.845   1.821  -2.059 C31 F3J 34 
F3J C32 C29 C 0 1 N N N 4.210  6.670  0.414  5.861   2.529  -0.692 C32 F3J 35 
F3J O2  O2  O 0 1 N N N 2.110  9.086  -7.080 -0.159  3.607  -2.048 O2  F3J 36 
F3J O3  O3  O 0 1 N N N -1.150 11.715 -2.995 -4.038  3.605  1.374  O3  F3J 37 
F3J N6  N6  N 0 1 N N N -1.977 9.772  -3.675 -4.511  1.436  1.331  N6  F3J 38 
F3J N7  N7  N 0 1 N N N -4.675 6.619  -3.569 -7.427  -1.212 -0.118 N7  F3J 39 
F3J C30 C30 C 0 1 N N N -6.115 6.735  -3.268 -7.085  -2.634 -0.256 C30 F3J 40 
F3J C33 C31 C 0 1 N N N -6.604 5.482  -2.538 -8.056  -3.298 -1.235 C33 F3J 41 
F3J N8  N8  N 0 1 N N N -6.373 4.287  -3.374 -9.431  -3.135 -0.743 N8  F3J 42 
F3J C35 C32 C 0 1 N N N -4.944 4.177  -3.722 -9.774  -1.713 -0.606 C35 F3J 43 
F3J C36 C33 C 0 1 N N N -4.482 5.445  -4.442 -8.803  -1.049 0.374  C36 F3J 44 
F3J C37 C34 C 0 1 N N N -6.808 3.087  -2.639 -10.388 -3.825 -1.619 C37 F3J 45 
F3J H1  H1  H 0 1 N N N -2.532 6.639  -4.835 -7.870  1.032  1.276  H1  F3J 46 
F3J H2  H2  H 0 1 N N N -2.669 8.209  -5.696 -6.821  1.420  -0.109 H2  F3J 47 
F3J H3  H3  H 0 1 N N N -1.875 7.879  -2.758 -6.091  2.731  1.827  H3  F3J 48 
F3J H4  H4  H 0 1 N N N -0.729 8.134  -4.117 -5.982  1.257  2.823  H4  F3J 49 
F3J H5  H5  H 0 1 N N N -3.527 11.083 -3.082 -4.018  -0.480 2.044  H5  F3J 50 
F3J H6  H6  H 0 1 N N N -3.657 10.458 -4.761 -3.078  0.066  0.632  H6  F3J 51 
F3J H7  H7  H 0 1 N N N -5.241 9.352  -3.076 -5.042  -0.153 -0.814 H7  F3J 52 
F3J H8  H8  H 0 1 N N N -3.787 8.680  -2.264 -4.797  -1.686 0.057  H8  F3J 53 
F3J H9  H9  H 0 1 N N N 1.473  8.680  -9.010 -0.539  5.193  -3.316 H9  F3J 54 
F3J H10 H10 H 0 1 N N N 0.294  8.310  -7.706 -1.953  4.205  -2.879 H10 F3J 55 
F3J H11 H11 H 0 1 N N N 0.614  10.016 -8.171 -1.248  5.325  -1.689 H11 F3J 56 
F3J H12 H12 H 0 1 N N N 6.362  7.002  0.856  7.138   1.329  0.660  H12 F3J 57 
F3J H13 H13 H 0 1 N N N 5.288  8.310  1.458  8.045   2.177  -0.666 H13 F3J 58 
F3J H14 H14 H 0 1 N N N -0.232 9.845  -6.008 -2.489  3.845  -0.891 H14 F3J 59 
F3J H15 H15 H 0 1 N N N 3.640  9.973  -2.847 0.327   0.189  0.882  H15 F3J 60 
F3J H16 H16 H 0 1 N N N 1.367  10.591 -2.093 -1.900  0.587  1.840  H16 F3J 61 
F3J H17 H17 H 0 1 N N N 7.904  6.681  -5.828 2.873   -0.111 2.768  H17 F3J 62 
F3J H18 H18 H 0 1 N N N 6.732  10.033 0.044  6.067   -1.757 -2.990 H18 F3J 63 
F3J H19 H19 H 0 1 N N N 11.219 8.218  -1.137 6.567   -4.386 1.160  H19 F3J 64 
F3J H20 H20 H 0 1 N N N 9.668  4.654  -3.564 4.774   -0.860 4.015  H20 F3J 65 
F3J H21 H21 H 0 1 N N N 7.903  4.515  -3.868 6.452   -0.369 3.681  H21 F3J 66 
F3J H22 H22 H 0 1 N N N 8.959  5.337  -5.066 5.113   0.760  3.361  H22 F3J 67 
F3J H23 H23 H 0 1 N N N 10.998 10.154 0.370  6.742   -5.483 -1.028 H23 F3J 68 
F3J H24 H24 H 0 1 N N N 8.781  11.025 0.970  6.514   -4.172 -3.097 H24 F3J 69 
F3J H25 H25 H 0 1 N N N 4.840  9.097  -0.761 7.384   0.230  -1.999 H25 F3J 70 
F3J H26 H26 H 0 1 N N N 4.359  9.422  -6.364 1.641   1.841  -1.983 H26 F3J 71 
F3J H27 H27 H 0 1 N N N -4.838 8.113  -5.062 -6.485  -0.982 1.745  H27 F3J 72 
F3J H28 H28 H 0 1 N N N 3.304  7.403  -1.478 6.430   2.334  -2.822 H28 F3J 73 
F3J H29 H29 H 0 1 N N N 4.621  6.206  -1.720 4.846   1.550  -2.400 H29 F3J 74 
F3J H30 H30 H 0 1 N N N 3.297  7.008  0.926  5.002   2.288  -0.065 H30 F3J 75 
F3J H31 H31 H 0 1 N N N 4.378  5.604  0.630  6.051   3.600  -0.758 H31 F3J 76 
F3J H33 H33 H 0 1 N N N -6.283 7.616  -2.631 -6.067  -2.728 -0.633 H33 F3J 77 
F3J H34 H34 H 0 1 N N N -6.675 6.850  -4.208 -7.159  -3.122 0.716  H34 F3J 78 
F3J H35 H35 H 0 1 N N N -7.680 5.578  -2.330 -7.962  -2.828 -2.215 H35 F3J 79 
F3J H36 H36 H 0 1 N N N -6.055 5.375  -1.591 -7.821  -4.359 -1.317 H36 F3J 80 
F3J H38 H38 H 0 1 N N N -4.795 3.309  -4.381 -9.700  -1.225 -1.578 H38 F3J 81 
F3J H39 H39 H 0 1 N N N -4.354 4.045  -2.803 -10.792 -1.619 -0.228 H39 F3J 82 
F3J H40 H40 H 0 1 N N N -3.416 5.352  -4.697 -8.896  -1.519 1.353  H40 F3J 83 
F3J H41 H41 H 0 1 N N N -5.069 5.575  -5.363 -9.037  0.012  0.455  H41 F3J 84 
F3J H42 H42 H 0 1 N N N -7.874 3.179  -2.384 -10.151 -4.889 -1.650 H42 F3J 85 
F3J H43 H43 H 0 1 N N N -6.657 2.197  -3.268 -11.398 -3.689 -1.232 H43 F3J 86 
F3J H44 H44 H 0 1 N N N -6.218 2.989  -1.716 -10.326 -3.409 -2.624 H44 F3J 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F3J C5  O2  SING N N 1  
F3J O2  C13 SING N N 2  
F3J C13 C12 DOUB Y N 3  
F3J C13 C14 SING Y N 4  
F3J N4  C18 DOUB Y N 5  
F3J N4  C17 SING Y N 6  
F3J N5  C14 SING N N 7  
F3J N5  C17 SING N N 8  
F3J C12 C11 SING Y N 9  
F3J C18 C19 SING Y N 10 
F3J C14 C15 DOUB Y N 11 
F3J C17 N3  DOUB Y N 12 
F3J C1  C   SING N N 13 
F3J C1  C2  SING N N 14 
F3J C36 C35 SING N N 15 
F3J C36 N7  SING N N 16 
F3J C   N7  SING N N 17 
F3J C   C4  SING N N 18 
F3J C28 N1  SING N N 19 
F3J C11 C6  SING N N 20 
F3J C11 C16 DOUB Y N 21 
F3J C19 N1  SING N N 22 
F3J C19 C20 DOUB Y N 23 
F3J C2  N6  SING N N 24 
F3J C3  N6  SING N N 25 
F3J C3  C4  SING N N 26 
F3J C35 N8  SING N N 27 
F3J N6  C6  SING N N 28 
F3J N7  C30 SING N N 29 
F3J C15 C16 SING Y N 30 
F3J C6  O3  DOUB N N 31 
F3J N3  C20 SING Y N 32 
F3J N8  C37 SING N N 33 
F3J N8  C33 SING N N 34 
F3J N1  C27 SING N N 35 
F3J C30 C33 SING N N 36 
F3J C20 N2  SING N N 37 
F3J C27 O1  DOUB N N 38 
F3J C27 C26 SING N N 39 
F3J N2  C21 SING N N 40 
F3J N2  C29 SING N N 41 
F3J C26 C21 DOUB Y N 42 
F3J C26 C25 SING Y N 43 
F3J C31 C29 SING N N 44 
F3J C31 C32 SING N N 45 
F3J C21 C22 SING Y N 46 
F3J C25 C24 DOUB Y N 47 
F3J C29 C7  SING N N 48 
F3J C22 C23 DOUB Y N 49 
F3J C24 C23 SING Y N 50 
F3J C32 C7  SING N N 51 
F3J C1  H1  SING N N 52 
F3J C1  H2  SING N N 53 
F3J C2  H3  SING N N 54 
F3J C2  H4  SING N N 55 
F3J C3  H5  SING N N 56 
F3J C3  H6  SING N N 57 
F3J C4  H7  SING N N 58 
F3J C4  H8  SING N N 59 
F3J C5  H9  SING N N 60 
F3J C5  H10 SING N N 61 
F3J C5  H11 SING N N 62 
F3J C7  H12 SING N N 63 
F3J C7  H13 SING N N 64 
F3J C12 H14 SING N N 65 
F3J C15 H15 SING N N 66 
F3J C16 H16 SING N N 67 
F3J C18 H17 SING N N 68 
F3J C22 H18 SING N N 69 
F3J C25 H19 SING N N 70 
F3J C28 H20 SING N N 71 
F3J C28 H21 SING N N 72 
F3J C28 H22 SING N N 73 
F3J C24 H23 SING N N 74 
F3J C23 H24 SING N N 75 
F3J C29 H25 SING N N 76 
F3J N5  H26 SING N N 77 
F3J C   H27 SING N N 78 
F3J C31 H28 SING N N 79 
F3J C31 H29 SING N N 80 
F3J C32 H30 SING N N 81 
F3J C32 H31 SING N N 82 
F3J C30 H33 SING N N 83 
F3J C30 H34 SING N N 84 
F3J C33 H35 SING N N 85 
F3J C33 H36 SING N N 86 
F3J C35 H38 SING N N 87 
F3J C35 H39 SING N N 88 
F3J C36 H40 SING N N 89 
F3J C36 H41 SING N N 90 
F3J C37 H42 SING N N 91 
F3J C37 H43 SING N N 92 
F3J C37 H44 SING N N 93 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F3J SMILES           ACDLabs              12.01 "C1C(CCN(C1)C(=O)c2ccc(c(c2)OC)Nc3nc5c(cn3)N(C(=O)c4c(cccc4)N5C6CCC6)C)N7CCN(C)CC7" 
F3J InChI            InChI                1.03  
"InChI=1S/C34H42N8O3/c1-38-17-19-40(20-18-38)24-13-15-41(16-14-24)32(43)23-11-12-27(30(21-23)45-3)36-34-35-22-29-31(37-34)42(25-7-6-8-25)28-10-5-4-9-26(28)33(44)39(29)2/h4-5,9-12,21-22,24-25H,6-8,13-20H2,1-3H3,(H,35,36,37)" 
F3J InChIKey         InChI                1.03  BPXUPQRJNWPFQU-UHFFFAOYSA-N 
F3J SMILES_CANONICAL CACTVS               3.385 "COc1cc(ccc1Nc2ncc3N(C)C(=O)c4ccccc4N(C5CCC5)c3n2)C(=O)N6CCC(CC6)N7CCN(C)CC7" 
F3J SMILES           CACTVS               3.385 "COc1cc(ccc1Nc2ncc3N(C)C(=O)c4ccccc4N(C5CCC5)c3n2)C(=O)N6CCC(CC6)N7CCN(C)CC7" 
F3J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1CCN(CC1)C2CCN(CC2)C(=O)c3ccc(c(c3)OC)Nc4ncc5c(n4)N(c6ccccc6C(=O)N5C)C7CCC7" 
F3J SMILES           "OpenEye OEToolkits" 2.0.6 "CN1CCN(CC1)C2CCN(CC2)C(=O)c3ccc(c(c3)OC)Nc4ncc5c(n4)N(c6ccccc6C(=O)N5C)C7CCC7" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F3J "SYSTEMATIC NAME" ACDLabs              12.01 "11-cyclobutyl-2-({2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one" 
F3J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "11-cyclobutyl-2-[[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-phenyl]amino]-5-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one"               
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F3J "Create component" 2018-02-26 RCSB 
F3J "Initial release"  2018-08-29 RCSB 
# 
