data_DNJ
# 
_chem_comp.id                                    DNJ 
_chem_comp.name                                  1-DEOXY-NOJIRIMYCIN 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H13 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2008-10-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      NOJ 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        163.172 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DNJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1DIE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DNJ C1  C1  C 0 1 N N N 44.396 37.774 0.363  1.773  0.179  -0.511 C1  DNJ 1  
DNJ C2  C2  C 0 1 N N S 43.275 38.834 0.363  0.801  -0.275 -1.602 C2  DNJ 2  
DNJ O2  O2  O 0 1 N N N 43.776 40.120 0.031  1.218  0.253  -2.862 O2  DNJ 3  
DNJ C3  C3  C 0 1 N N R 42.484 38.718 1.635  -0.603 0.235  -1.270 C3  DNJ 4  
DNJ O3  O3  O 0 1 N N N 41.412 39.599 1.593  -1.535 -0.270 -2.227 O3  DNJ 5  
DNJ C4  C4  C 0 1 N N R 41.959 37.319 1.676  -0.989 -0.249 0.130  C4  DNJ 6  
DNJ O4  O4  O 0 1 N N N 41.546 37.082 3.069  -2.255 0.305  0.495  O4  DNJ 7  
DNJ C5  C5  C 0 1 N N R 42.999 36.303 1.354  0.074  0.205  1.131  C5  DNJ 8  
DNJ C6  C6  C 0 1 N N N 42.352 34.941 1.167  -0.325 -0.243 2.538  C6  DNJ 9  
DNJ O6  O6  O 0 1 N N N 42.557 34.602 -0.266 0.666  0.183  3.474  O6  DNJ 10 
DNJ N5  N5  N 0 1 N N N 43.740 36.591 0.283  1.369  -0.387 0.780  N5  DNJ 11 
DNJ H11 1H1 H 0 1 N N N 45.165 37.923 -0.430 1.764  1.267  -0.448 H11 DNJ 12 
DNJ H12 2H1 H 0 1 N N N 45.095 37.850 1.228  2.779  -0.160 -0.757 H12 DNJ 13 
DNJ H2  H2  H 0 1 N N N 42.538 38.645 -0.452 0.791  -1.364 -1.649 H2  DNJ 14 
DNJ HO2 HO2 H 0 1 N N N 43.085 40.772 0.031  2.106  -0.089 -3.030 HO2 DNJ 15 
DNJ H3  H3  H 0 1 N N N 43.110 38.953 2.526  -0.610 1.325  -1.295 H3  DNJ 16 
DNJ HO3 HO3 H 0 1 N N N 40.911 39.525 2.397  -1.249 0.051  -3.093 HO3 DNJ 17 
DNJ H4  H4  H 0 1 N N N 41.139 37.220 0.926  -1.054 -1.337 0.134  H4  DNJ 18 
DNJ HO4 HO4 H 0 1 N N N 41.212 36.192 3.095  -2.894 -0.001 -0.161 HO4 DNJ 19 
DNJ H5  H5  H 0 1 N N N 43.696 36.300 2.224  0.154  1.292  1.106  H5  DNJ 20 
DNJ H61 1H6 H 0 1 N N N 42.729 34.163 1.871  -0.406 -1.330 2.564  H61 DNJ 21 
DNJ H62 2H6 H 0 1 N N N 41.285 34.901 1.489  -1.286 0.198  2.800  H62 DNJ 22 
DNJ HO6 HO6 H 0 1 N N N 42.152 33.750 -0.382 0.376  -0.118 4.346  HO6 DNJ 23 
DNJ HN5 HN5 H 0 1 N N N 44.393 35.833 0.087  2.034  -0.056 1.462  HN5 DNJ 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DNJ C1 C2  SING N N 1  
DNJ C1 N5  SING N N 2  
DNJ C1 H11 SING N N 3  
DNJ C1 H12 SING N N 4  
DNJ C2 O2  SING N N 5  
DNJ C2 C3  SING N N 6  
DNJ C2 H2  SING N N 7  
DNJ O2 HO2 SING N N 8  
DNJ C3 O3  SING N N 9  
DNJ C3 C4  SING N N 10 
DNJ C3 H3  SING N N 11 
DNJ O3 HO3 SING N N 12 
DNJ C4 O4  SING N N 13 
DNJ C4 C5  SING N N 14 
DNJ C4 H4  SING N N 15 
DNJ O4 HO4 SING N N 16 
DNJ C5 C6  SING N N 17 
DNJ C5 N5  SING N N 18 
DNJ C5 H5  SING N N 19 
DNJ C6 O6  SING N N 20 
DNJ C6 H61 SING N N 21 
DNJ C6 H62 SING N N 22 
DNJ O6 HO6 SING N N 23 
DNJ N5 HN5 SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DNJ SMILES           ACDLabs              10.04 "OC1C(NCC(O)C1O)CO"                                                           
DNJ InChI            InChI                1.02b "InChI=1/C6H13NO4/c8-2-3-5(10)6(11)4(9)1-7-3/h3-11H,1-2H2/t3-,4+,5-,6-/m1/s1" 
DNJ InChIKey         InChI                1.02b LXBIFEVIBLOUGU-JGWLITMVBT                                                     
DNJ SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1NC[C@H](O)[C@@H](O)[C@@H]1O"                                         
DNJ SMILES           CACTVS               3.341 "OC[CH]1NC[CH](O)[CH](O)[CH]1O"                                               
DNJ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H]([C@@H]([C@H](N1)CO)O)O)O"                                     
DNJ SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(C(C(N1)CO)O)O)O"                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DNJ "SYSTEMATIC NAME" ACDLabs              10.04 "(2R,3R,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol" 
DNJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DNJ "Create component" 1999-07-08 RCSB 
# 
