data_UDI
# 
_chem_comp.id                                    UDI 
_chem_comp.name                                  butane-1,4-dithiol 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C4 H10 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "1,2-dithiane 1-oxide (reacted)" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-01 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        122.252 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UDI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CCX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UDI S6  S1  S 0 1 N N N N N N 29.982 -0.979 18.877 -3.405 0.169  -0.000 S6  UDI 1  
UDI C5  C1  C 0 1 N N N N N N 29.442 -1.389 17.212 -1.801 -0.679 -0.000 C5  UDI 2  
UDI C4  C2  C 0 1 N N N N N N 30.161 -0.529 16.177 -0.676 0.358  0.000  C4  UDI 3  
UDI C3  C3  C 0 1 N N N N N N 29.450 0.799  15.963 0.676  -0.358 -0.000 C3  UDI 4  
UDI C2  C4  C 0 1 N N N N N N 30.393 1.809  15.307 1.801  0.679  0.000  C2  UDI 5  
UDI S1  S2  S 0 1 N N N N N N 31.314 1.140  13.888 3.405  -0.169 0.000  S1  UDI 6  
UDI H52 H1  H 0 1 N N N N N N 28.358 -1.217 17.133 -1.721 -1.303 0.890  H52 UDI 7  
UDI H51 H2  H 0 1 N N N N N N 29.660 -2.449 17.014 -1.721 -1.303 -0.890 H51 UDI 8  
UDI H42 H3  H 0 1 N N N N N N 30.196 -1.074 15.222 -0.757 0.982  -0.890 H42 UDI 9  
UDI H41 H4  H 0 1 N N N N N N 31.186 -0.333 16.525 -0.757 0.982  0.890  H41 UDI 10 
UDI H32 H5  H 0 1 N N N N N N 29.117 1.192  16.935 0.757  -0.982 0.890  H32 UDI 11 
UDI H31 H6  H 0 1 N N N N N N 28.577 0.642  15.312 0.757  -0.982 -0.890 H31 UDI 12 
UDI H22 H7  H 0 1 N N N N N N 31.118 2.148  16.062 1.721  1.303  -0.890 H22 UDI 13 
UDI H21 H8  H 0 1 N N N N N N 29.797 2.666  14.960 1.721  1.303  0.890  H21 UDI 14 
UDI HS1 H9  H 0 1 N N N N N N 32.024 2.165  13.519 4.285  0.848  0.000  HS1 UDI 15 
UDI HS6 H11 H 0 1 N N N N N N 29.275 -1.796 19.599 -4.285 -0.848 -0.000 HS6 UDI 16 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UDI S1 C2  SING N N 1  
UDI C2 C3  SING N N 2  
UDI C3 C4  SING N N 3  
UDI C4 C5  SING N N 4  
UDI C5 S6  SING N N 5  
UDI C5 H52 SING N N 6  
UDI C5 H51 SING N N 7  
UDI C4 H42 SING N N 8  
UDI C4 H41 SING N N 9  
UDI C3 H32 SING N N 10 
UDI C3 H31 SING N N 11 
UDI C2 H22 SING N N 12 
UDI C2 H21 SING N N 13 
UDI S1 HS1 SING N N 14 
UDI S6 HS6 SING N N 15 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UDI InChI            InChI                1.06  InChI=1S/C4H10S2/c5-3-1-2-4-6/h5-6H,1-4H2 
UDI InChIKey         InChI                1.06  SMTOKHQOVJRXLK-UHFFFAOYSA-N               
UDI SMILES_CANONICAL CACTVS               3.385 SCCCCS                                    
UDI SMILES           CACTVS               3.385 SCCCCS                                    
UDI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CCS)CS"                                
UDI SMILES           "OpenEye OEToolkits" 2.0.7 "C(CCS)CS"                                
# 
_pdbx_chem_comp_identifier.comp_id           UDI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        butane-1,4-dithiol 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UDI "Create component" 2023-02-01 PDBE 
UDI "Modify synonyms"  2023-02-03 PDBE 
UDI "Initial release"  2023-12-13 RCSB 
UDI "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      UDI 
_pdbx_chem_comp_synonyms.name         "1,2-dithiane 1-oxide (reacted)" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 UDI CYS None Crosslinker "Amino-acid side chain" "Any position" S1 SG ? ? 
2 UDI CYS None Crosslinker "Amino-acid side chain" "Any position" S6 SG ? ? 
# 
