data_TOI
#

_chem_comp.id                                   TOI
_chem_comp.name                                 
;(1~{R},2~{S},5~{S},6~{S})-2-[(1~{S})-1-[3-[(4-azanylidene-2-methyl-1~{H}-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl
(phosphonooxy)phosphoryl]oxyethyl]-1,3-thiazol-3-ium-2-yl]-1,4-bis(oxidanyl)-4-oxidanylidene-butyl]-6-oxidanyl-5-(3-oxid
anyl-3-oxidanylidene-prop-1-en-2-yl)oxy-cyclohex-3-ene-1-carboxylic acid
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H35 N4 O16 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "ThDP, decarboxylated 2-oxoglutarate and isochorismate adduct, covalent intermediate II"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2015-11-17
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       753.586
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TOI
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5ESU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TOI  O2P    O1   O  0  1  N  N  N  -67.828  15.677  28.208  -4.545  -7.686   0.165  O2P    TOI   1  
TOI  C1P    C1   C  0  1  N  N  N  -67.496  15.569  27.008  -4.537  -6.594  -0.625  C1P    TOI   2  
TOI  O1P    O2   O  0  1  N  N  N  -66.696  16.365  26.469  -4.689  -6.711  -1.825  O1P    TOI   3  
TOI  C2P    C2   C  0  1  N  N  N  -68.063  14.459  26.180  -4.344  -5.258  -0.034  C2P    TOI   4  
TOI  C3P    C3   C  0  1  N  N  N  -68.912  13.595  26.708  -4.177  -5.129   1.284  C3P    TOI   5  
TOI  O3P    O3   O  0  1  N  N  N  -67.659  14.362  24.784  -4.336  -4.156  -0.831  O3P    TOI   6  
TOI  C5I    C4   C  0  1  N  N  S  -68.019  13.148  24.128  -4.191  -2.889  -0.185  C5I    TOI   7  
TOI  C6I    C5   C  0  1  N  N  S  -66.889  12.814  23.171  -4.799  -1.798  -1.069  C6I    TOI   8  
TOI  O3I    O4   O  0  1  N  N  N  -65.731  12.436  23.928  -6.222  -1.924  -1.079  O3I    TOI   9  
TOI  C1I    C6   C  0  1  N  N  R  -67.202  11.711  22.156  -4.406  -0.432  -0.491  C1I    TOI  10  
TOI  CI     C7   C  0  1  N  N  N  -66.347  12.013  20.950  -5.135   0.660  -1.231  CI     TOI  11  
TOI  O2I    O5   O  0  1  N  N  N  -65.201  12.477  21.139  -6.346   1.061  -0.813  O2I    TOI  12  
TOI  O1I    O6   O  0  1  N  N  N  -66.790  11.799  19.804  -4.630   1.173  -2.201  O1I    TOI  13  
TOI  C4I    C8   C  0  1  N  N  N  -69.253  13.371  23.301  -2.734  -2.612   0.045  C4I    TOI  14  
TOI  C3I    C9   C  0  1  N  N  N  -69.651  12.422  22.461  -2.174  -1.463  -0.156  C3I    TOI  15  
TOI  C2I    C10  C  0  1  N  N  S  -68.677  11.506  21.746  -2.896  -0.252  -0.657  C2I    TOI  16  
TOI  C21    C11  C  0  1  N  N  S  -69.113  10.043  21.951  -2.441   0.976   0.135  C21    TOI  17  
TOI  C3     C12  C  0  1  N  N  N  -69.546   9.801  23.400  -2.715   0.752   1.624  C3     TOI  18  
TOI  C41    C13  C  0  1  N  N  N  -69.180   8.396  23.884  -1.665  -0.201   2.198  C41    TOI  19  
TOI  C51    C14  C  0  1  N  N  N  -69.245   8.278  25.397  -1.848  -0.311   3.690  C51    TOI  20  
TOI  O3     O7   O  0  1  N  N  N  -70.184   7.634  25.917  -2.784   0.234   4.225  O3     TOI  21  
TOI  O4     O8   O  0  1  N  N  N  -68.350   8.819  26.083  -0.971  -1.014   4.424  O4     TOI  22  
TOI  O5     O9   O  0  1  N  N  N  -67.970   9.224  21.707  -3.161   2.126  -0.313  O5     TOI  23  
TOI  C2     C15  C  0  1  Y  N  N  -70.240   9.665  21.010  -0.965   1.192  -0.077  C2     TOI  24  
TOI  S1     S1   S  0  1  Y  N  N  -71.861   9.932  21.525   0.022   0.258  -1.114  S1     TOI  25  
TOI  N3     N1   N  1  1  Y  N  N  -70.229   9.575  19.631  -0.265   2.114   0.493  N3     TOI  26  
TOI  C35    C16  C  0  1  N  N  N  -69.011   9.349  18.844  -0.868   3.059   1.436  C35    TOI  27  
TOI  "C5'"  C17  C  0  1  N  N  N  -68.897   7.931  18.314  -1.536   4.173   0.672  "C5'"  TOI  28  
TOI  "C4'"  C18  C  0  1  N  N  N  -68.778   6.746  19.203  -0.763   5.310   0.151  "C4'"  TOI  29  
TOI  "N4'"  N2   N  0  1  N  N  N  -68.784   6.862  20.550   0.473   5.530   0.556  "N4'"  TOI  30  
TOI  "N3'"  N3   N  0  1  N  N  N  -68.672   5.526  18.643  -1.356   6.129  -0.759  "N3'"  TOI  31  
TOI  "C2'"  C19  C  0  1  N  N  N  -68.663   5.386  17.299  -2.645   6.066  -0.951  "C2'"  TOI  32  
TOI  C2A    C20  C  0  1  N  N  N  -68.540   4.004  16.711  -3.283   6.976  -1.968  C2A    TOI  33  
TOI  "N1'"  N4   N  0  1  N  N  N  -68.762   6.447  16.485  -3.422   5.201  -0.257  "N1'"  TOI  34  
TOI  "C6'"  C21  C  0  1  N  N  N  -68.872   7.700  16.946  -2.866   4.159   0.435  "C6'"  TOI  35  
TOI  C4     C22  C  0  1  Y  N  N  -71.481   9.736  18.994   1.017   2.167   0.191  C4     TOI  36  
TOI  C4A    C23  C  0  1  N  N  N  -71.713   9.689  17.505   1.952   3.191   0.783  C4A    TOI  37  
TOI  C5     C24  C  0  1  Y  N  N  -72.466   9.929  19.899   1.421   1.235  -0.677  C5     TOI  38  
TOI  C5A    C25  C  0  1  N  N  N  -73.927  10.145  19.551   2.824   1.059  -1.199  C5A    TOI  39  
TOI  C5B    C26  C  0  1  N  N  N  -74.833   9.075  20.155   3.594   0.107  -0.280  C5B    TOI  40  
TOI  O5G    O10  O  0  1  N  N  N  -76.195   9.352  19.817   4.924  -0.060  -0.775  O5G    TOI  41  
TOI  P1     P1   P  0  1  N  N  N  -77.415   8.479  20.417   6.016  -0.998  -0.054  P1     TOI  42  
TOI  O13    O11  O  0  1  N  N  N  -78.681   8.879  19.699   6.162  -0.587   1.360  O13    TOI  43  
TOI  O12    O12  O  0  1  N  N  N  -76.998   7.028  20.382   5.534  -2.532  -0.120  O12    TOI  44  
TOI  O11    O13  O  0  1  N  N  N  -77.507   8.916  21.970   7.432  -0.847  -0.805  O11    TOI  45  
TOI  P2     P2   P  0  1  N  N  N  -78.042  10.338  22.524   8.946  -1.244  -0.428  P2     TOI  46  
TOI  O23    O14  O  0  1  N  N  N  -76.797  11.093  22.922   9.517  -0.207   0.664  O23    TOI  47  
TOI  O21    O15  O  0  1  N  N  N  -78.801  10.986  21.390   8.972  -2.614   0.133  O21    TOI  48  
TOI  O22    O16  O  0  1  N  N  N  -78.904   9.931  23.694   9.861  -1.189  -1.751  O22    TOI  49  
TOI  H1     H1   H  0  1  N  N  N  -67.386  16.424  28.593  -4.675  -8.540  -0.268  H1     TOI  50  
TOI  H2     H2   H  0  1  N  N  N  -69.202  13.687  27.744  -3.931  -4.166   1.705  H2     TOI  51  
TOI  H3     H3   H  0  1  N  N  N  -69.316  12.797  26.103  -4.287  -5.989   1.928  H3     TOI  52  
TOI  H4     H4   H  0  1  N  N  N  -68.173  12.326  24.843  -4.711  -2.910   0.772  H4     TOI  53  
TOI  H5     H5   H  0  1  N  N  N  -66.655  13.726  22.603  -4.415  -1.893  -2.085  H5     TOI  54  
TOI  H6     H6   H  0  1  N  N  N  -65.530  13.116  24.561  -6.539  -2.773  -1.418  H6     TOI  55  
TOI  H7     H7   H  0  1  N  N  N  -66.849  10.761  22.585  -4.666  -0.394   0.567  H7     TOI  56  
TOI  H8     H8   H  0  1  N  N  N  -64.775  12.620  20.302  -6.775   1.764  -1.320  H8     TOI  57  
TOI  H9     H9   H  0  1  N  N  N  -69.810  14.292  23.388  -2.115  -3.422   0.403  H9     TOI  58  
TOI  H11    H11  H  0  1  N  N  N  -70.709  12.298  22.280  -1.117  -1.372   0.050  H11    TOI  59  
TOI  H13    H13  H  0  1  N  N  N  -68.749  11.721  20.670  -2.663  -0.107  -1.712  H13    TOI  60  
TOI  H14    H14  H  0  1  N  N  N  -69.049  10.539  24.047  -2.667   1.705   2.150  H14    TOI  61  
TOI  H15    H15  H  0  1  N  N  N  -70.636   9.927  23.470  -3.707   0.317   1.750  H15    TOI  62  
TOI  H16    H16  H  0  1  N  N  N  -69.882   7.674  23.441  -1.780  -1.185   1.744  H16    TOI  63  
TOI  H17    H17  H  0  1  N  N  N  -68.157   8.162  23.554  -0.668   0.184   1.982  H17    TOI  64  
TOI  H18    H18  H  0  1  N  N  N  -68.514   8.655  27.004  -1.130  -1.056   5.377  H18    TOI  65  
TOI  H19    H19  H  0  1  N  N  N  -67.271   9.470  22.302  -2.966   2.381  -1.226  H19    TOI  66  
TOI  H20    H20  H  0  1  N  N  N  -68.139   9.555  19.482  -1.608   2.542   2.046  H20    TOI  67  
TOI  H21    H21  H  0  1  N  N  N  -69.013  10.042  17.990  -0.093   3.475   2.080  H21    TOI  68  
TOI  H22    H22  H  0  1  N  N  N  -68.704   5.974  21.003   0.946   6.324   0.261  H22    TOI  69  
TOI  H24    H24  H  0  1  N  N  N  -68.471   3.265  17.522  -2.517   7.600  -2.429  H24    TOI  70  
TOI  H25    H25  H  0  1  N  N  N  -69.424   3.789  16.093  -3.773   6.376  -2.736  H25    TOI  71  
TOI  H26    H26  H  0  1  N  N  N  -67.635   3.950  16.088  -4.021   7.610  -1.477  H26    TOI  72  
TOI  H27    H27  H  0  1  N  N  N  -68.941   8.527  16.255  -3.480   3.346   0.794  H27    TOI  73  
TOI  H28    H28  H  0  1  N  N  N  -71.924   8.654  17.199   2.521   2.737   1.594  H28    TOI  74  
TOI  H29    H29  H  0  1  N  N  N  -72.569  10.330  17.247   2.636   3.546   0.012  H29    TOI  75  
TOI  H30    H30  H  0  1  N  N  N  -70.815  10.050  16.983   1.374   4.030   1.170  H30    TOI  76  
TOI  H31    H31  H  0  1  N  N  N  -74.239  11.129  19.932   2.787   0.642  -2.205  H31    TOI  77  
TOI  H32    H32  H  0  1  N  N  N  -74.036  10.124  18.457   3.327   2.025  -1.224  H32    TOI  78  
TOI  H33    H33  H  0  1  N  N  N  -74.550   8.089  19.757   3.630   0.524   0.726  H33    TOI  79  
TOI  H34    H34  H  0  1  N  N  N  -74.720   9.075  21.249   3.091  -0.860  -0.255  H34    TOI  80  
TOI  H35    H35  H  0  1  N  N  N  -77.631   6.528  19.879   5.418  -2.869  -1.019  H35    TOI  81  
TOI  H36    H36  H  0  1  N  N  N  -76.706  11.865  22.375   9.530   0.712   0.364  H36    TOI  82  
TOI  H37    H37  H  0  1  N  N  N  -79.809  10.158  23.515  10.788  -1.417  -1.598  H37    TOI  83  
TOI  H10    H10  H  0  1  N  N  N  -68.753   6.297  15.496  -4.385   5.316  -0.257  H10    TOI  84  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TOI  "N1'"  "C6'"  SING  N  N   1  
TOI  "N1'"  "C2'"  SING  N  N   2  
TOI  C2A    "C2'"  SING  N  N   3  
TOI  "C6'"  "C5'"  DOUB  N  N   4  
TOI  "C2'"  "N3'"  DOUB  N  N   5  
TOI  C4A    C4     SING  N  N   6  
TOI  "C5'"  C35    SING  N  N   7  
TOI  "C5'"  "C4'"  SING  N  N   8  
TOI  "N3'"  "C4'"  SING  N  N   9  
TOI  C35    N3     SING  N  N  10  
TOI  C4     N3     SING  Y  N  11  
TOI  C4     C5     DOUB  Y  N  12  
TOI  "C4'"  "N4'"  DOUB  N  N  13  
TOI  C5A    C5     SING  N  N  14  
TOI  C5A    C5B    SING  N  N  15  
TOI  N3     C2     DOUB  Y  N  16  
TOI  O13    P1     DOUB  N  N  17  
TOI  O1I    CI     DOUB  N  N  18  
TOI  O5G    C5B    SING  N  N  19  
TOI  O5G    P1     SING  N  N  20  
TOI  C5     S1     SING  Y  N  21  
TOI  O12    P1     SING  N  N  22  
TOI  P1     O11    SING  N  N  23  
TOI  CI     O2I    SING  N  N  24  
TOI  CI     C1I    SING  N  N  25  
TOI  C2     S1     SING  Y  N  26  
TOI  C2     C21    SING  N  N  27  
TOI  O21    P2     DOUB  N  N  28  
TOI  O5     C21    SING  N  N  29  
TOI  C2I    C21    SING  N  N  30  
TOI  C2I    C1I    SING  N  N  31  
TOI  C2I    C3I    SING  N  N  32  
TOI  C21    C3     SING  N  N  33  
TOI  O11    P2     SING  N  N  34  
TOI  C1I    C6I    SING  N  N  35  
TOI  C3I    C4I    DOUB  N  N  36  
TOI  P2     O23    SING  N  N  37  
TOI  P2     O22    SING  N  N  38  
TOI  C6I    O3I    SING  N  N  39  
TOI  C6I    C5I    SING  N  N  40  
TOI  C4I    C5I    SING  N  N  41  
TOI  C3     C41    SING  N  N  42  
TOI  C41    C51    SING  N  N  43  
TOI  C5I    O3P    SING  N  N  44  
TOI  O3P    C2P    SING  N  N  45  
TOI  C51    O3     DOUB  N  N  46  
TOI  C51    O4     SING  N  N  47  
TOI  C2P    C3P    DOUB  N  N  48  
TOI  C2P    C1P    SING  N  N  49  
TOI  O1P    C1P    DOUB  N  N  50  
TOI  C1P    O2P    SING  N  N  51  
TOI  O2P    H1     SING  N  N  52  
TOI  C3P    H2     SING  N  N  53  
TOI  C3P    H3     SING  N  N  54  
TOI  C5I    H4     SING  N  N  55  
TOI  C6I    H5     SING  N  N  56  
TOI  O3I    H6     SING  N  N  57  
TOI  C1I    H7     SING  N  N  58  
TOI  O2I    H8     SING  N  N  59  
TOI  C4I    H9     SING  N  N  60  
TOI  C3I    H11    SING  N  N  61  
TOI  C2I    H13    SING  N  N  62  
TOI  C3     H14    SING  N  N  63  
TOI  C3     H15    SING  N  N  64  
TOI  C41    H16    SING  N  N  65  
TOI  C41    H17    SING  N  N  66  
TOI  O4     H18    SING  N  N  67  
TOI  O5     H19    SING  N  N  68  
TOI  C35    H20    SING  N  N  69  
TOI  C35    H21    SING  N  N  70  
TOI  "N4'"  H22    SING  N  N  71  
TOI  C2A    H24    SING  N  N  72  
TOI  C2A    H25    SING  N  N  73  
TOI  C2A    H26    SING  N  N  74  
TOI  "C6'"  H27    SING  N  N  75  
TOI  C4A    H28    SING  N  N  76  
TOI  C4A    H29    SING  N  N  77  
TOI  C4A    H30    SING  N  N  78  
TOI  C5A    H31    SING  N  N  79  
TOI  C5A    H32    SING  N  N  80  
TOI  C5B    H33    SING  N  N  81  
TOI  C5B    H34    SING  N  N  82  
TOI  O12    H35    SING  N  N  83  
TOI  O23    H36    SING  N  N  84  
TOI  O22    H37    SING  N  N  85  
TOI  "N1'"  H10    SING  N  N  86  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TOI  InChI             InChI                 1.03   "InChI=1S/C26H34N4O16P2S/c1-12-18(7-9-44-48(42,43)46-47(39,40)41)49-25(30(12)11-15-10-28-14(3)29-22(15)27)26(38,8-6-19(31)32)16-4-5-17(45-13(2)23(34)35)21(33)20(16)24(36)37/h4-5,10,16-17,20-21,33,38H,2,6-9,11H2,1,3H3,(H7-,27,28,29,31,32,34,35,36,37,39,40,41,42,43)/p+1/t16-,17-,20+,21+,26-/m0/s1"  
TOI  InChIKey          InChI                 1.03   AJVZCJMDQDMTBE-BLORIJLWSA-O  
TOI  SMILES_CANONICAL  CACTVS                3.385  "CC1=NC(=N)C(=CN1)C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[C@](O)(CCC(O)=O)[C@H]3C=C[C@H](OC(=C)C(O)=O)[C@@H](O)[C@@H]3C(O)=O"  
TOI  SMILES            CACTVS                3.385  "CC1=NC(=N)C(=CN1)C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[C](O)(CCC(O)=O)[CH]3C=C[CH](OC(=C)C(O)=O)[CH](O)[CH]3C(O)=O"  
TOI  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "[H]/N=C/1\C(=CNC(=N1)C)C[n+]2c(c(sc2[C@](CCC(=O)O)([C@H]3C=C[C@@H]([C@H]([C@@H]3C(=O)O)O)OC(=C)C(=O)O)O)CCOP(=O)(O)OP(=O)(O)O)C"  
TOI  SMILES            "OpenEye OEToolkits"  2.0.4  "Cc1c(sc([n+]1CC2=CNC(=NC2=N)C)C(CCC(=O)O)(C3C=CC(C(C3C(=O)O)O)OC(=C)C(=O)O)O)CCOP(=O)(O)OP(=O)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          TOI
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.4
_pdbx_chem_comp_identifier.identifier       "(1~{R},2~{S},5~{S},6~{S})-2-[(1~{S})-1-[3-[(4-azanylidene-2-methyl-1~{H}-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-1,3-thiazol-3-ium-2-yl]-1,4-bis(oxidanyl)-4-oxidanylidene-butyl]-6-oxidanyl-5-(3-oxidanyl-3-oxidanylidene-prop-1-en-2-yl)oxy-cyclohex-3-ene-1-carboxylic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TOI  "Create component"  2015-11-17  RCSB  
TOI  "Initial release"   2016-06-22  RCSB  
TOI  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     TOI
_pdbx_chem_comp_synonyms.name        "ThDP, decarboxylated 2-oxoglutarate and isochorismate adduct, covalent intermediate II"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
