data_R2I
# 
_chem_comp.id                                    R2I 
_chem_comp.name                                  "9,11-bis(4-fluorophenyl)-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H14 F2 N2 O4 Ru2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-22 
_chem_comp.pdbx_modified_date                    2023-06-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        526.419 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R2I 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BPU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R2I C11 C1  C  0 1 Y N N -23.477 -0.619 12.082 -4.410 -2.794 0.253  C11 R2I 1  
R2I C12 C2  C  0 1 Y N N -24.411 0.366  11.985 -4.264 -1.530 0.799  C12 R2I 2  
R2I C13 C3  C  0 1 Y N N -24.814 0.807  10.752 -3.249 -0.701 0.364  C13 R2I 3  
R2I C14 C4  C  0 1 N N N -27.220 -1.071 6.836  -0.000 0.715  2.168  C14 R2I 4  
R2I RU1 RU1 RU 0 0 N N N -25.437 0.668  5.408  1.285  1.318  -0.036 RU1 R2I 5  
R2I RU2 RU2 RU 0 0 N N N -24.389 -0.745 6.853  -1.285 1.319  -0.036 RU2 R2I 6  
R2I F1  F1  F  0 1 N N N -28.731 6.542  5.696  5.403  -3.604 0.681  F1  R2I 7  
R2I F2  F2  F  0 1 N N N -23.097 -1.058 13.298 -5.404 -3.603 0.681  F2  R2I 8  
R2I O3  O1  O  0 1 N N N -23.600 1.416  4.968  1.321  2.926  -0.891 O3  R2I 9  
R2I O1  O2  O  0 1 N N N -27.213 -0.144 5.979  1.320  1.224  1.783  O1  R2I 10 
R2I O2  O3  O  0 1 N N N -26.184 -1.553 7.399  -1.321 1.225  1.783  O2  R2I 11 
R2I O4  O4  O  0 1 N N N -22.587 0.001  6.342  -1.320 2.927  -0.891 O4  R2I 12 
R2I N1  N1  N  0 1 N N N -25.687 2.064  6.849  1.345  -0.299 -1.065 N1  R2I 13 
R2I N2  N2  N  0 1 N N N -24.605 0.639  8.287  -1.345 -0.298 -1.065 N2  R2I 14 
R2I C2  C5  C  0 1 Y N N -26.488 3.215  6.576  2.373  -1.136 -0.622 C2  R2I 15 
R2I C3  C6  C  0 1 Y N N -25.881 4.421  6.249  2.521  -2.405 -1.169 C3  R2I 16 
R2I C4  C7  C  0 1 Y N N -26.637 5.555  5.966  3.538  -3.230 -0.730 C4  R2I 17 
R2I C7  C8  C  0 1 Y N N -27.877 3.141  6.566  3.252  -0.699 0.360  C7  R2I 18 
R2I C1  C9  C  0 1 N N N -25.361 1.717  8.078  -0.000 -0.943 -0.864 C1  R2I 19 
R2I C6  C10 C  0 1 Y N N -28.639 4.245  6.276  4.267  -1.528 0.796  C6  R2I 20 
R2I C5  C11 C  0 1 Y N N -28.012 5.422  5.985  4.410  -2.794 0.253  C5  R2I 21 
R2I C8  C12 C  0 1 Y N N -24.258 0.257  9.618  -2.374 -1.136 -0.623 C8  R2I 22 
R2I C16 C13 C  0 1 N N N -22.560 0.937  5.505  0.000  3.519  -0.652 C16 R2I 23 
R2I C10 C14 C  0 1 Y N N -22.927 -1.191 10.988 -3.542 -3.228 -0.734 C10 R2I 24 
R2I C9  C15 C  0 1 Y N N -23.307 -0.752 9.741  -2.522 -2.404 -1.169 C9  R2I 25 
R2I H1  H1  H  0 1 N N N -24.834 0.800  12.879 -4.945 -1.192 1.567  H1  R2I 26 
R2I H2  H2  H  0 1 N N N -25.563 1.581  10.670 -3.136 0.285  0.790  H2  R2I 27 
R2I H3  H3  H  0 1 N N N -27.857 -0.708 7.656  -0.001 -0.338 1.887  H3  R2I 28 
R2I H4  H4  H  0 1 N N N -27.709 -1.924 6.342  -0.000 0.698  3.258  H4  R2I 29 
R2I H5  H5  H  0 1 N N N -24.803 4.480  6.214  1.841  -2.745 -1.936 H5  R2I 30 
R2I H6  H6  H  0 1 N N N -26.167 6.501  5.741  3.653  -4.217 -1.155 H6  R2I 31 
R2I H7  H7  H  0 1 N N N -28.362 2.202  6.789  3.142  0.288  0.783  H7  R2I 32 
R2I H8  H8  H  0 1 N N N -24.825 2.571  8.518  -0.000 -1.836 -1.490 H8  R2I 33 
R2I H9  H9  H  0 1 N N N -26.303 1.555  8.623  -0.000 -1.322 0.158  H9  R2I 34 
R2I H10 H10 H  0 1 N N N -29.717 4.183  6.278  4.951  -1.189 1.560  H10 R2I 35 
R2I H11 H11 H  0 1 N N N -21.928 0.584  4.677  0.000  3.820  0.395  H11 R2I 36 
R2I H12 H12 H  0 1 N N N -22.065 1.780  6.010  0.001  4.462  -1.198 H12 R2I 37 
R2I H13 H13 H  0 1 N N N -22.199 -1.982 11.091 -3.659 -4.213 -1.162 H13 R2I 38 
R2I H14 H14 H  0 1 N N N -22.867 -1.190 8.857  -1.842 -2.744 -1.937 H14 R2I 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R2I O3  RU1 SING N N 1  
R2I O3  C16 SING N N 2  
R2I RU1 O1  SING N N 3  
R2I RU1 N1  SING N N 4  
R2I RU1 RU2 SING N N 5  
R2I C16 O4  SING N N 6  
R2I F1  C5  SING N N 7  
R2I C4  C5  DOUB Y N 8  
R2I C4  C3  SING Y N 9  
R2I O1  C14 SING N N 10 
R2I C5  C6  SING Y N 11 
R2I C3  C2  DOUB Y N 12 
R2I C6  C7  DOUB Y N 13 
R2I O4  RU2 SING N N 14 
R2I C7  C2  SING Y N 15 
R2I C2  N1  SING N N 16 
R2I C14 O2  SING N N 17 
R2I N1  C1  SING N N 18 
R2I RU2 O2  SING N N 19 
R2I RU2 N2  SING N N 20 
R2I C1  N2  SING N N 21 
R2I N2  C8  SING N N 22 
R2I C8  C9  DOUB Y N 23 
R2I C8  C13 SING Y N 24 
R2I C9  C10 SING Y N 25 
R2I C13 C12 DOUB Y N 26 
R2I C10 C11 DOUB Y N 27 
R2I C12 C11 SING Y N 28 
R2I C11 F2  SING N N 29 
R2I C12 H1  SING N N 30 
R2I C13 H2  SING N N 31 
R2I C14 H3  SING N N 32 
R2I C14 H4  SING N N 33 
R2I C3  H5  SING N N 34 
R2I C4  H6  SING N N 35 
R2I C7  H7  SING N N 36 
R2I C1  H8  SING N N 37 
R2I C1  H9  SING N N 38 
R2I C6  H10 SING N N 39 
R2I C16 H11 SING N N 40 
R2I C16 H12 SING N N 41 
R2I C10 H13 SING N N 42 
R2I C9  H14 SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R2I InChI            InChI                1.06    "InChI=1S/C13H10F2N2.2CH2O2.2Ru/c14-10-1-5-12(6-2-10)16-9-17-13-7-3-11(15)4-8-13;2*2-1-3;;/h1-8H,9H2;2*1H2;;/q3*-2;2*+3" 
R2I InChIKey         InChI                1.06    TVQMJLRZOPYFSZ-UHFFFAOYSA-N                                                                                              
R2I SMILES_CANONICAL CACTVS               3.385   "Fc1ccc(cc1)N2CN(c3ccc(F)cc3)[Ru]45OCO[Ru]24OCO5"                                                                        
R2I SMILES           CACTVS               3.385   "Fc1ccc(cc1)N2CN(c3ccc(F)cc3)[Ru]45OCO[Ru]24OCO5"                                                                        
R2I SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1N2CN([Ru]34[Ru]2(OCO3)OCO4)c5ccc(cc5)F)F"                                                                      
R2I SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1cc(ccc1N2CN([Ru]34[Ru]2(OCO3)OCO4)c5ccc(cc5)F)F"                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           R2I 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "9,11-bis(4-fluorophenyl)-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecane" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R2I "Create component" 2022-11-22 PDBE 
R2I "Initial release"  2023-06-28 RCSB 
# 
