data_LDI
# 
_chem_comp.id                                    LDI 
_chem_comp.name                                  "1-[2-(benzylamino)ethyl]-N-hydroxypiperidine-4-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-02 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        277.362 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LDI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7U59 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LDI C10 C1  C 0 1 N N N 27.504 39.899 35.850 1.162  -0.124 -0.377 C10 LDI 1  
LDI C13 C2  C 0 1 Y N N 31.248 39.104 35.877 4.900  -0.372 -0.339 C13 LDI 2  
LDI C15 C3  C 0 1 Y N N 33.414 40.000 36.492 6.787  -0.675 1.102  C15 LDI 3  
LDI C17 C4  C 0 1 Y N N 33.213 38.581 34.565 6.910  0.870  -0.722 C17 LDI 4  
LDI C20 C5  C 0 1 N N N 23.091 40.407 35.762 -2.955 -1.152 -0.005 C20 LDI 5  
LDI C03 C6  C 0 1 N N N 21.235 40.783 34.160 -5.319 -0.398 -0.051 C03 LDI 6  
LDI C05 C7  C 0 1 N N N 22.607 41.270 34.700 -3.947 -0.098 0.496  C05 LDI 7  
LDI C06 C8  C 0 1 N N N 23.553 41.424 33.613 -3.495 1.284  0.017  C06 LDI 8  
LDI C07 C9  C 0 1 N N N 25.009 41.665 34.046 -2.078 1.557  0.525  C07 LDI 9  
LDI C09 C10 C 0 1 N N N 26.635 41.107 35.460 0.226  0.828  0.370  C09 LDI 10 
LDI C12 C11 C 0 1 N N N 29.727 38.967 36.126 3.484  -0.715 -0.725 C12 LDI 11 
LDI C14 C12 C 0 1 Y N N 32.048 39.872 36.724 5.488  -0.990 0.749  C14 LDI 12 
LDI C16 C13 C 0 1 Y N N 34.000 39.353 35.412 7.497  0.257  0.369  C16 LDI 13 
LDI C18 C14 C 0 1 Y N N 31.846 38.456 34.801 5.611  0.555  -1.076 C18 LDI 14 
LDI C19 C15 C 0 1 N N N 24.603 40.438 36.107 -1.553 -0.809 0.504  C19 LDI 15 
LDI N02 N1  N 0 1 N N N 20.359 39.959 34.951 -6.357 0.403  0.260  N02 LDI 16 
LDI N08 N2  N 0 1 N N N 25.528 40.761 35.047 -1.167 0.522  0.018  N08 LDI 17 
LDI N11 N3  N 0 1 N N N 28.928 40.063 35.553 2.555  0.181  -0.024 N11 LDI 18 
LDI O01 O1  O 0 1 N N N 19.115 39.543 34.427 -7.647 0.122  -0.254 O01 LDI 19 
LDI O04 O2  O 0 1 N N N 20.836 41.049 33.075 -5.488 -1.359 -0.770 O04 LDI 20 
LDI H1  H1  H 0 1 N N N 27.394 39.730 36.931 0.933  -1.153 -0.097 H1  LDI 21 
LDI H2  H2  H 0 1 N N N 27.137 39.019 35.302 1.023  -0.001 -1.451 H2  LDI 22 
LDI H3  H3  H 0 1 N N N 34.019 40.603 37.153 7.247  -1.157 1.952  H3  LDI 23 
LDI H4  H4  H 0 1 N N N 33.663 38.077 33.722 7.467  1.595  -1.298 H4  LDI 24 
LDI H5  H5  H 0 1 N N N 22.543 40.678 36.677 -3.248 -2.134 0.369  H5  LDI 25 
LDI H6  H6  H 0 1 N N N 22.843 39.373 35.479 -2.954 -1.163 -1.095 H6  LDI 26 
LDI H7  H7  H 0 1 N N N 22.434 42.266 35.134 -3.977 -0.115 1.585  H7  LDI 27 
LDI H8  H8  H 0 1 N N N 23.233 42.280 33.001 -3.503 1.312  -1.073 H8  LDI 28 
LDI H9  H9  H 0 1 N N N 23.525 40.508 33.005 -4.174 2.043  0.406  H9  LDI 29 
LDI H10 H10 H 0 1 N N N 25.645 41.579 33.152 -1.748 2.534  0.173  H10 LDI 30 
LDI H11 H11 H 0 1 N N N 25.076 42.687 34.447 -2.073 1.542  1.615  H11 LDI 31 
LDI H12 H12 H 0 1 N N N 27.148 41.674 34.670 0.364  0.704  1.445  H12 LDI 32 
LDI H13 H13 H 0 1 N N N 26.501 41.749 36.343 0.454  1.856  0.090  H13 LDI 33 
LDI H14 H14 H 0 1 N N N 29.554 38.944 37.212 3.362  -0.596 -1.801 H14 LDI 34 
LDI H15 H15 H 0 1 N N N 29.387 38.021 35.680 3.272  -1.748 -0.447 H15 LDI 35 
LDI H16 H16 H 0 1 N N N 31.601 40.373 37.570 4.934  -1.717 1.322  H16 LDI 36 
LDI H17 H17 H 0 1 N N N 35.060 39.449 35.231 8.512  0.503  0.645  H17 LDI 37 
LDI H18 H18 H 0 1 N N N 31.244 37.849 34.141 5.153  1.034  -1.929 H18 LDI 38 
LDI H19 H19 H 0 1 N N N 24.874 39.442 36.486 -1.551 -0.812 1.594  H19 LDI 39 
LDI H20 H20 H 0 1 N N N 24.743 41.184 36.903 -0.842 -1.549 0.137  H20 LDI 40 
LDI H21 H21 H 0 1 N N N 20.631 39.681 35.872 -6.222 1.172  0.835  H21 LDI 41 
LDI H23 H23 H 0 1 N N N 29.054 40.073 34.561 2.772  1.148  -0.215 H23 LDI 42 
LDI H25 H25 H 0 1 N N N 19.012 39.884 33.546 -8.326 0.751  0.023  H25 LDI 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LDI O04 C03 DOUB N N 1  
LDI C06 C07 SING N N 2  
LDI C06 C05 SING N N 3  
LDI C07 N08 SING N N 4  
LDI C03 C05 SING N N 5  
LDI C03 N02 SING N N 6  
LDI O01 N02 SING N N 7  
LDI C17 C18 DOUB Y N 8  
LDI C17 C16 SING Y N 9  
LDI C05 C20 SING N N 10 
LDI C18 C13 SING Y N 11 
LDI N08 C09 SING N N 12 
LDI N08 C19 SING N N 13 
LDI C16 C15 DOUB Y N 14 
LDI C09 C10 SING N N 15 
LDI N11 C10 SING N N 16 
LDI N11 C12 SING N N 17 
LDI C20 C19 SING N N 18 
LDI C13 C12 SING N N 19 
LDI C13 C14 DOUB Y N 20 
LDI C15 C14 SING Y N 21 
LDI C10 H1  SING N N 22 
LDI C10 H2  SING N N 23 
LDI C15 H3  SING N N 24 
LDI C17 H4  SING N N 25 
LDI C20 H5  SING N N 26 
LDI C20 H6  SING N N 27 
LDI C05 H7  SING N N 28 
LDI C06 H8  SING N N 29 
LDI C06 H9  SING N N 30 
LDI C07 H10 SING N N 31 
LDI C07 H11 SING N N 32 
LDI C09 H12 SING N N 33 
LDI C09 H13 SING N N 34 
LDI C12 H14 SING N N 35 
LDI C12 H15 SING N N 36 
LDI C14 H16 SING N N 37 
LDI C16 H17 SING N N 38 
LDI C18 H18 SING N N 39 
LDI C19 H19 SING N N 40 
LDI C19 H20 SING N N 41 
LDI N02 H21 SING N N 42 
LDI N11 H23 SING N N 43 
LDI O01 H25 SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LDI SMILES           ACDLabs              12.01 "ONC(=O)C1CCN(CCNCc2ccccc2)CC1"                                                                                 
LDI InChI            InChI                1.03  "InChI=1S/C15H23N3O2/c19-15(17-20)14-6-9-18(10-7-14)11-8-16-12-13-4-2-1-3-5-13/h1-5,14,16,20H,6-12H2,(H,17,19)" 
LDI InChIKey         InChI                1.03  IKRHDIZZKCLEPC-UHFFFAOYSA-N                                                                                     
LDI SMILES_CANONICAL CACTVS               3.385 "ONC(=O)C1CCN(CCNCc2ccccc2)CC1"                                                                                 
LDI SMILES           CACTVS               3.385 "ONC(=O)C1CCN(CCNCc2ccccc2)CC1"                                                                                 
LDI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNCCN2CCC(CC2)C(=O)NO"                                                                               
LDI SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNCCN2CCC(CC2)C(=O)NO"                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LDI "SYSTEMATIC NAME" ACDLabs              12.01 "1-[2-(benzylamino)ethyl]-N-hydroxypiperidine-4-carboxamide"             
LDI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-oxidanyl-1-[2-[(phenylmethyl)amino]ethyl]piperidine-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LDI "Create component" 2022-03-02 RCSB 
LDI "Initial release"  2023-01-11 RCSB 
# 
