data_KGI
# 
_chem_comp.id                                    KGI 
_chem_comp.name                                  "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H33 N13 O9" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-25 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        683.633 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KGI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZZ7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KGI N1  N1  N 0 1 N N N 15.717 7.142  14.111 3.197  -3.914 0.652  N1  KGI 1  
KGI C7  C1  C 0 1 Y N N 18.583 11.302 12.892 4.114  1.350  -0.753 C7  KGI 2  
KGI C8  C2  C 0 1 Y N N 20.394 12.307 12.374 5.768  2.751  -0.588 C8  KGI 3  
KGI N2  N2  N 0 1 Y N N 19.613 10.548 13.438 4.659  1.156  0.492  N2  KGI 4  
KGI C9  C3  C 0 1 Y N N 20.784 11.191 13.102 5.708  2.033  0.619  C9  KGI 5  
KGI O1  O1  O 0 1 N N N 19.131 8.245  13.416 3.921  -1.081 0.882  O1  KGI 6  
KGI C1  C4  C 0 1 N N N 15.560 6.445  15.239 2.734  -4.995 -0.007 C1  KGI 7  
KGI O5  O2  O 0 1 N N N 17.712 10.371 7.976  -5.391 -2.589 0.517  O5  KGI 8  
KGI C5  C5  C 0 1 N N R 18.554 9.369  15.409 2.860  0.647  2.108  C5  KGI 9  
KGI C6  C6  C 0 1 N N S 18.329 7.875  15.614 2.080  -0.671 2.316  C6  KGI 10 
KGI N3  N3  N 0 1 Y N N 19.012 12.374 12.252 4.779  2.289  -1.384 N3  KGI 11 
KGI C4  C7  C 0 1 N N R 19.524 9.331  14.236 4.206  0.194  1.499  C4  KGI 12 
KGI O4  O3  O 0 1 N N N 15.736 8.459  9.977  -3.041 -0.144 -0.502 O4  KGI 13 
KGI C3  C8  C 0 1 N N R 18.296 7.342  14.174 3.046  -1.763 1.807  C3  KGI 14 
KGI O3  O4  O 0 1 N N N 19.445 7.313  16.296 1.787  -0.866 3.701  O3  KGI 15 
KGI C2  C9  C 0 1 N N N 16.991 7.299  13.393 2.269  -2.868 1.088  C2  KGI 16 
KGI N4  N4  N 0 1 Y N N 22.032 10.820 13.387 6.587  2.306  1.577  N4  KGI 17 
KGI N   N5  N 0 1 N N N 13.349 5.851  16.142 2.943  -7.134 -1.140 N   KGI 18 
KGI C   C10 C 0 1 N N N 14.345 6.914  16.063 3.689  -6.074 -0.449 C   KGI 19 
KGI O   O5  O 0 1 N N N 16.332 5.565  15.624 1.550  -5.099 -0.244 O   KGI 20 
KGI C10 C11 C 0 1 Y N N 22.920 11.670 12.864 7.503  3.236  1.404  C10 KGI 21 
KGI C11 C12 C 0 1 Y N N 21.424 13.131 11.878 6.765  3.735  -0.726 C11 KGI 22 
KGI C12 C13 C 0 1 N N N 17.211 10.931 13.003 2.994  0.632  -1.284 C12 KGI 23 
KGI C13 C14 C 0 1 N N N 16.026 10.795 13.001 2.076  0.044  -1.720 C13 KGI 24 
KGI C14 C15 C 0 1 N N N 14.572 10.564 13.057 0.925  -0.694 -2.266 C14 KGI 25 
KGI C15 C16 C 0 1 N N N 13.962 9.936  10.718 -1.364 -1.339 -1.816 C15 KGI 26 
KGI C16 C17 C 0 1 N N R 15.290 9.828  9.989  -2.388 -1.419 -0.682 C16 KGI 27 
KGI C17 C18 C 0 1 N N R 16.804 8.387  9.047  -4.271 -0.441 0.193  C17 KGI 28 
KGI C18 C19 C 0 1 N N R 16.585 9.505  8.011  -4.793 -1.738 -0.463 C18 KGI 29 
KGI C19 C20 C 0 1 N N S 15.317 10.214 8.515  -3.526 -2.397 -1.052 C19 KGI 30 
KGI C20 C21 C 0 1 Y N N 15.853 6.420  7.762  -5.252 1.548  -1.010 C20 KGI 31 
KGI C21 C22 C 0 1 Y N N 17.521 5.107  7.678  -6.919 2.067  0.275  C21 KGI 32 
KGI C22 C23 C 0 1 Y N N 17.928 6.202  8.428  -6.286 0.948  0.842  C22 KGI 33 
KGI C23 C24 C 0 1 Y N N 19.962 5.390  8.671  -7.828 0.960  2.546  C23 KGI 34 
KGI C24 C25 C 0 1 Y N N 18.481 4.102  7.448  -8.045 2.594  0.930  C24 KGI 35 
KGI C25 C26 C 0 1 N N N 12.851 8.907  12.644 -0.644 0.935  -1.403 C25 KGI 36 
KGI C26 C27 C 0 1 N N N 11.617 9.737  12.921 -1.126 1.325  -2.776 C26 KGI 37 
KGI N10 N6  N 0 1 Y N N 19.137 6.399  8.962  -6.770 0.433  1.968  N10 KGI 38 
KGI N11 N7  N 0 1 Y N N 19.716 4.283  7.964  -8.456 2.011  2.052  N11 KGI 39 
KGI N12 N8  N 0 1 N N N 18.241 2.986  6.753  -8.711 3.695  0.419  N12 KGI 40 
KGI N5  N9  N 0 1 Y N N 22.699 12.774 12.143 7.599  3.937  0.289  N5  KGI 41 
KGI N6  N10 N 0 1 N N N 21.208 14.241 11.163 6.874  4.475  -1.890 N6  KGI 42 
KGI N7  N11 N 0 1 N N N 14.065 9.549  12.134 -0.246 -0.479 -1.406 N7  KGI 43 
KGI N8  N12 N 0 1 Y N N 16.847 7.047  8.465  -5.235 0.648  0.013  N8  KGI 44 
KGI N9  N13 N 0 1 Y N N 16.205 5.256  7.267  -6.241 2.380  -0.854 N9  KGI 45 
KGI O2  O6  O 0 1 N N N 19.177 10.003 16.521 3.074  1.304  3.359  O2  KGI 46 
KGI O6  O7  O 0 1 N N N 15.401 11.623 8.326  -3.302 -3.675 -0.454 O6  KGI 47 
KGI O7  O8  O 0 1 N N N 11.661 10.988 12.534 -1.076 0.528  -3.683 O7  KGI 48 
KGI O8  O9  O 0 1 N N N 10.648 9.251  13.470 -1.611 2.558  -2.992 O8  KGI 49 
KGI H1  H1  H 0 1 N N N 14.910 7.590  13.726 4.145  -3.831 0.842  H1  KGI 50 
KGI H2  H2  H 0 1 N N N 18.470 9.893  7.660  -5.682 -3.444 0.170  H2  KGI 51 
KGI H3  H3  H 0 1 N N N 17.616 9.866  15.120 2.328  1.302  1.419  H3  KGI 52 
KGI H4  H4  H 0 1 N N N 17.375 7.683  16.128 1.161  -0.667 1.729  H4  KGI 53 
KGI H5  H5  H 0 1 N N N 20.523 9.118  14.645 4.958  0.078  2.279  H5  KGI 54 
KGI H6  H6  H 0 1 N N N 18.741 6.336  14.167 3.619  -2.179 2.636  H6  KGI 55 
KGI H7  H7  H 0 1 N N N 19.469 7.640  17.188 1.232  -0.175 4.087  H7  KGI 56 
KGI H8  H8  H 0 1 N N N 17.067 6.456  12.691 1.761  -2.449 0.219  H8  KGI 57 
KGI H9  H9  H 0 1 N N N 16.925 8.241  12.829 1.532  -3.296 1.768  H9  KGI 58 
KGI H10 H10 H 0 1 N N N 12.566 6.166  16.678 2.415  -6.759 -1.914 H10 KGI 59 
KGI H11 H11 H 0 1 N N N 13.046 5.609  15.220 3.562  -7.870 -1.447 H11 KGI 60 
KGI H13 H13 H 0 1 N N N 14.675 7.179  17.078 4.429  -5.649 -1.127 H13 KGI 61 
KGI H14 H14 H 0 1 N N N 13.898 7.796  15.581 4.193  -6.493 0.422  H14 KGI 62 
KGI H15 H15 H 0 1 N N N 23.957 11.433 13.049 8.202  3.433  2.203  H15 KGI 63 
KGI H16 H16 H 0 1 N N N 14.068 11.514 12.828 0.709  -0.335 -3.272 H16 KGI 64 
KGI H17 H17 H 0 1 N N N 14.317 10.251 14.080 1.160  -1.758 -2.302 H17 KGI 65 
KGI H18 H18 H 0 1 N N N 13.612 10.977 10.661 -0.991 -2.338 -2.039 H18 KGI 66 
KGI H19 H19 H 0 1 N N N 13.233 9.277  10.224 -1.838 -0.921 -2.704 H19 KGI 67 
KGI H20 H20 H 0 1 N N N 16.028 10.447 10.521 -1.904 -1.731 0.244  H20 KGI 68 
KGI H21 H21 H 0 1 N N N 17.756 8.584  9.563  -4.078 -0.603 1.254  H21 KGI 69 
KGI H22 H22 H 0 1 N N N 16.392 9.060  7.024  -5.507 -1.508 -1.254 H22 KGI 70 
KGI H23 H23 H 0 1 N N N 14.436 9.797  8.006  -3.611 -2.490 -2.134 H23 KGI 71 
KGI H24 H24 H 0 1 N N N 14.869 6.844  7.627  -4.546 1.571  -1.828 H24 KGI 72 
KGI H25 H25 H 0 1 N N N 20.965 5.481  9.060  -8.196 0.517  3.459  H25 KGI 73 
KGI H26 H26 H 0 1 N N N 12.562 8.144  11.907 0.212  1.553  -1.129 H26 KGI 74 
KGI H27 H27 H 0 1 N N N 13.124 8.418  13.591 -1.446 1.085  -0.680 H27 KGI 75 
KGI H28 H28 H 0 1 N N N 19.069 2.426  6.724  -8.401 4.112  -0.400 H28 KGI 76 
KGI H29 H29 H 0 1 N N N 17.506 2.471  7.193  -9.487 4.049  0.881  H29 KGI 77 
KGI H30 H30 H 0 1 N N N 22.084 14.659 10.922 7.566  5.150  -1.972 H30 KGI 78 
KGI H31 H31 H 0 1 N N N 20.709 14.008 10.328 6.259  4.318  -2.624 H31 KGI 79 
KGI H33 H33 H 0 1 N N N 18.572 10.027 17.253 2.259  1.557  3.814  H33 KGI 80 
KGI H34 H34 H 0 1 N N N 14.606 12.034 8.646  -4.016 -4.310 -0.604 H34 KGI 81 
KGI H35 H35 H 0 1 N N N 9.970  9.911  13.560 -1.908 2.762  -3.890 H35 KGI 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KGI N12 C24 SING N N 1  
KGI N9  C21 SING Y N 2  
KGI N9  C20 DOUB Y N 3  
KGI C24 C21 DOUB Y N 4  
KGI C24 N11 SING Y N 5  
KGI C21 C22 SING Y N 6  
KGI C20 N8  SING Y N 7  
KGI N11 C23 DOUB Y N 8  
KGI O5  C18 SING N N 9  
KGI C18 C19 SING N N 10 
KGI C18 C17 SING N N 11 
KGI O6  C19 SING N N 12 
KGI C22 N8  SING Y N 13 
KGI C22 N10 DOUB Y N 14 
KGI N8  C17 SING N N 15 
KGI C19 C16 SING N N 16 
KGI C23 N10 SING Y N 17 
KGI C17 O4  SING N N 18 
KGI O4  C16 SING N N 19 
KGI C16 C15 SING N N 20 
KGI C15 N7  SING N N 21 
KGI N6  C11 SING N N 22 
KGI C11 N5  DOUB Y N 23 
KGI C11 C8  SING Y N 24 
KGI N7  C25 SING N N 25 
KGI N7  C14 SING N N 26 
KGI N5  C10 SING Y N 27 
KGI N3  C8  SING Y N 28 
KGI N3  C7  DOUB Y N 29 
KGI C8  C9  DOUB Y N 30 
KGI O7  C26 DOUB N N 31 
KGI C25 C26 SING N N 32 
KGI C10 N4  DOUB Y N 33 
KGI C7  C12 SING N N 34 
KGI C7  N2  SING Y N 35 
KGI C26 O8  SING N N 36 
KGI C13 C12 TRIP N N 37 
KGI C13 C14 SING N N 38 
KGI C9  N4  SING Y N 39 
KGI C9  N2  SING Y N 40 
KGI C2  N1  SING N N 41 
KGI C2  C3  SING N N 42 
KGI O1  C3  SING N N 43 
KGI O1  C4  SING N N 44 
KGI N2  C4  SING N N 45 
KGI N1  C1  SING N N 46 
KGI C3  C6  SING N N 47 
KGI C4  C5  SING N N 48 
KGI C1  O   DOUB N N 49 
KGI C1  C   SING N N 50 
KGI C5  C6  SING N N 51 
KGI C5  O2  SING N N 52 
KGI C6  O3  SING N N 53 
KGI C   N   SING N N 54 
KGI N1  H1  SING N N 55 
KGI O5  H2  SING N N 56 
KGI C5  H3  SING N N 57 
KGI C6  H4  SING N N 58 
KGI C4  H5  SING N N 59 
KGI C3  H6  SING N N 60 
KGI O3  H7  SING N N 61 
KGI C2  H8  SING N N 62 
KGI C2  H9  SING N N 63 
KGI N   H10 SING N N 64 
KGI N   H11 SING N N 65 
KGI C   H13 SING N N 66 
KGI C   H14 SING N N 67 
KGI C10 H15 SING N N 68 
KGI C14 H16 SING N N 69 
KGI C14 H17 SING N N 70 
KGI C15 H18 SING N N 71 
KGI C15 H19 SING N N 72 
KGI C16 H20 SING N N 73 
KGI C17 H21 SING N N 74 
KGI C18 H22 SING N N 75 
KGI C19 H23 SING N N 76 
KGI C20 H24 SING N N 77 
KGI C23 H25 SING N N 78 
KGI C25 H26 SING N N 79 
KGI C25 H27 SING N N 80 
KGI N12 H28 SING N N 81 
KGI N12 H29 SING N N 82 
KGI N6  H30 SING N N 83 
KGI N6  H31 SING N N 84 
KGI O2  H33 SING N N 85 
KGI O6  H34 SING N N 86 
KGI O8  H35 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KGI InChI            InChI                1.06  "InChI=1S/C27H33N13O9/c28-4-14(41)31-5-11-18(44)21(47)27(48-11)40-13(37-17-23(30)33-9-35-25(17)40)2-1-3-38(7-15(42)43)6-12-19(45)20(46)26(49-12)39-10-36-16-22(29)32-8-34-24(16)39/h8-12,18-21,26-27,44-47H,3-7,28H2,(H,31,41)(H,42,43)(H2,29,32,34)(H2,30,33,35)/t11-,12-,18-,19-,20-,21-,26-,27-/m1/s1" 
KGI InChIKey         InChI                1.06  NHPRQGWVLUQCPR-WNZAMUCISA-N                                                                                                                                                                                                                                                                               
KGI SMILES_CANONICAL CACTVS               3.385 "NCC(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(nc3c(N)ncnc23)C#CCN(C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)CC(O)=O"                                                                                                                                                                                  
KGI SMILES           CACTVS               3.385 "NCC(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2c(nc3c(N)ncnc23)C#CCN(C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)CC(O)=O"                                                                                                                                                                                            
KGI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN(CC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CNC(=O)CN)O)O)N)CC(=O)O)O)O)N"                                                                                                                                                                          
KGI SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN(CC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CNC(=O)CN)O)O)N)CC(=O)O)O)O)N"                                                                                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           KGI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-[(2-azanylethanoylamino)methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl]amino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KGI "Create component"  2022-05-25 PDBE 
KGI "Modify descriptor" 2022-08-22 RCSB 
KGI "Initial release"   2023-01-11 RCSB 
# 
