data_JCI
# 
_chem_comp.id                                    JCI 
_chem_comp.name                                  "(3~{R},5~{R})-3-[2-[[ethynyl(methyl)amino]methyl]-1,3-thiazol-4-yl]-5-[3-(2-nitrophenyl)-1,2,4-oxadiazol-5-yl]pyrrolidin-3-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H18 N6 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-07 
_chem_comp.pdbx_modified_date                    2024-08-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        426.449 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JCI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8Q4B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JCI C10  C1  C 0 1 N N R N N N 1.357  5.763  10.098 -2.108 -1.804 -0.643 C10  JCI 1  
JCI C14  C2  C 0 1 N N R N N N 0.578  4.001  8.743  0.004  -1.613 0.584  C14  JCI 2  
JCI C15  C3  C 0 1 Y N N N N N -0.140 2.760  9.346  1.446  -1.324 0.257  C15  JCI 3  
JCI C17  C4  C 0 1 Y N N N N N -1.740 1.378  9.903  3.447  -0.623 0.294  C17  JCI 4  
JCI C19  C5  C 0 1 Y N N N N N -3.202 -0.543 9.683  5.285  -0.227 1.932  C19  JCI 5  
JCI C20  C6  C 0 1 Y N N N N N -4.455 -1.156 9.843  6.460  0.397  2.298  C20  JCI 6  
JCI C21  C7  C 0 1 Y N N N N N -5.520 -0.452 10.391 7.065  1.296  1.438  C21  JCI 7  
JCI C29  C8  C 0 1 N N N N N N 0.354  5.577  9.262  -0.933 -0.842 -0.371 C29  JCI 8  
JCI C30  C9  C 0 1 Y N N N N N 2.958  7.752  10.401 -4.579 -1.819 -0.284 C30  JCI 9  
JCI C06  C10 C 0 1 N N N N N N 0.070  10.671 10.552 -4.909 1.737  1.415  C06  JCI 10 
JCI C07  C11 C 0 1 Y N N N N N 1.025  9.432  10.471 -4.633 0.409  0.759  C07  JCI 11 
JCI C09  C12 C 0 1 Y N N N N N 1.652  7.280  10.279 -3.402 -1.196 -0.169 C09  JCI 12 
JCI C12  C13 C 0 1 N N N N N N 2.610  4.997  9.411  -1.782 -3.075 0.170  C12  JCI 13 
JCI C18  C14 C 0 1 Y N N N N N -3.004 0.800  10.076 4.707  0.050  0.695  C18  JCI 14 
JCI C22  C15 C 0 1 Y N N N N N -5.337 0.884  10.785 6.496  1.575  0.208  C22  JCI 15 
JCI C23  C16 C 0 1 Y N N N N N -4.080 1.496  10.617 5.318  0.960  -0.165 C23  JCI 16 
JCI N04  N1  N 0 1 N N N N N N 0.474  11.680 9.565  -5.174 2.745  0.385  N04  JCI 17 
JCI N08  N2  N 0 1 Y N N N N N 0.685  8.161  10.322 -3.467 -0.006 0.393  N08  JCI 18 
JCI N13  N3  N 0 1 N N N N N N 1.922  3.689  8.925  -0.306 -3.045 0.338  N13  JCI 19 
JCI N16  N4  N 0 1 Y N N N N N -1.465 2.538  9.327  2.277  -0.606 0.971  N16  JCI 20 
JCI N24  N5  N 0 1 N N N N N N -3.907 2.883  11.046 4.711  1.259  -1.482 N24  JCI 21 
JCI N27  N6  N 0 1 Y N N N N N -0.599 0.847  10.291 3.261  -1.347 -0.780 N27  JCI 22 
JCI O11  O1  O 0 1 N N N N N N 1.122  5.095  11.360 -2.185 -2.110 -2.037 O11  JCI 23 
JCI O25  O2  O 0 1 N N N N N N -4.611 3.739  10.673 5.305  1.959  -2.282 O25  JCI 24 
JCI O26  O3  O 0 1 N N N N N N -3.036 3.101  11.788 3.616  0.806  -1.764 O26  JCI 25 
JCI O28  O4  O 0 1 Y N N N N N 0.415  1.712  9.938  2.119  -1.756 -0.814 O28  JCI 26 
JCI S31  S1  S 0 1 Y N N N N N 2.749  9.445  10.575 -5.821 -0.762 0.383  S31  JCI 27 
JCI H141 H1  H 0 0 N N N N N N 0.355  4.008  7.666  -0.210 -1.350 1.620  H141 JCI 28 
JCI H191 H2  H 0 0 N N N N N N -2.383 -1.102 9.256  4.815  -0.932 2.602  H191 JCI 29 
JCI H201 H3  H 0 0 N N N N N N -4.592 -2.183 9.538  6.908  0.184  3.257  H201 JCI 30 
JCI H211 H4  H 0 0 N N N N N N -6.482 -0.928 10.513 7.984  1.783  1.728  H211 JCI 31 
JCI H292 H5  H 0 0 N N N N N N 0.407  6.282  8.419  -0.414 -0.605 -1.300 H292 JCI 32 
JCI H291 H6  H 0 0 N N N N N N -0.613 5.690  9.774  -1.293 0.070  0.106  H291 JCI 33 
JCI H301 H7  H 0 0 N N N N N N 3.879  7.188  10.389 -4.740 -2.797 -0.714 H301 JCI 34 
JCI H061 H8  H 0 0 N N N N N N 0.122  11.106 11.561 -5.778 1.647  2.067  H061 JCI 35 
JCI H062 H9  H 0 0 N N N N N N -0.962 10.350 10.344 -4.043 2.039  2.004  H062 JCI 36 
JCI H122 H10 H 0 0 N N N N N N 3.025  5.573  8.570  -2.276 -3.041 1.141  H122 JCI 37 
JCI H121 H11 H 0 0 N N N N N N 3.406  4.788  10.141 -2.086 -3.966 -0.379 H121 JCI 38 
JCI H221 H12 H 0 0 N N N N N N -6.157 1.440  11.215 6.972  2.278  -0.459 H221 JCI 39 
JCI H4   H16 H 0 1 N N N N N N 2.327  3.384  8.063  -0.019 -3.616 1.118  H4   JCI 40 
JCI H111 H18 H 0 0 N N N N N N 0.392  5.508  11.806 -2.893 -2.729 -2.265 H111 JCI 41 
JCI C1   C17 C 0 1 N N N N N N ?      ?      ?      -6.543 2.970  -0.085 C1   JCI 42 
JCI C2   C18 C 0 1 N N N N N N ?      ?      ?      -4.152 3.469  -0.132 C2   JCI 43 
JCI C3   C19 C 0 1 N N N N N N ?      ?      ?      -3.267 4.097  -0.581 C3   JCI 44 
JCI H1   H15 H 0 1 N N N N N N ?      ?      ?      -7.017 3.737  0.528  H1   JCI 45 
JCI H2   H16 H 0 1 N N N N N N ?      ?      ?      -6.521 3.298  -1.124 H2   JCI 46 
JCI H3   H17 H 0 1 N N N N N N ?      ?      ?      -7.110 2.042  -0.009 H3   JCI 47 
JCI H5   H18 H 0 1 N N N N N N ?      ?      ?      -2.475 4.658  -0.982 H5   JCI 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JCI C06 N04  SING N N 1  
JCI C07 C06  SING N N 2  
JCI N08 C07  DOUB Y N 3  
JCI C09 N08  SING Y N 4  
JCI O11 C10  SING N N 5  
JCI C12 C10  SING N N 6  
JCI N13 C12  SING N N 7  
JCI C14 N13  SING N N 8  
JCI N16 C15  DOUB Y N 9  
JCI C17 N16  SING Y N 10 
JCI C19 C18  DOUB Y N 11 
JCI C20 C19  SING Y N 12 
JCI C21 C20  DOUB Y N 13 
JCI C22 C21  SING Y N 14 
JCI C23 C22  DOUB Y N 15 
JCI N24 C23  SING N N 16 
JCI O25 N24  DOUB N N 17 
JCI O26 N24  DOUB N N 18 
JCI C18 C17  SING N N 19 
JCI N27 C17  DOUB Y N 20 
JCI O28 N27  SING Y N 21 
JCI C15 C14  SING N N 22 
JCI C29 C14  SING N N 23 
JCI C10 C09  SING N N 24 
JCI C30 C09  DOUB Y N 25 
JCI S31 C30  SING Y N 26 
JCI C07 S31  SING Y N 27 
JCI C10 C29  SING N N 28 
JCI C15 O28  SING Y N 29 
JCI C18 C23  SING Y N 30 
JCI C14 H141 SING N N 31 
JCI C19 H191 SING N N 32 
JCI C20 H201 SING N N 33 
JCI C21 H211 SING N N 34 
JCI C29 H292 SING N N 35 
JCI C29 H291 SING N N 36 
JCI C30 H301 SING N N 37 
JCI C06 H061 SING N N 38 
JCI C06 H062 SING N N 39 
JCI C12 H122 SING N N 40 
JCI C12 H121 SING N N 41 
JCI C22 H221 SING N N 42 
JCI N13 H4   SING N N 43 
JCI O11 H111 SING N N 44 
JCI N04 C1   SING N N 45 
JCI N04 C2   SING N N 46 
JCI C2  C3   TRIP N N 47 
JCI C1  H1   SING N N 48 
JCI C1  H2   SING N N 49 
JCI C1  H3   SING N N 50 
JCI C3  H5   SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JCI InChI            InChI                1.06  "InChI=1S/C19H18N6O4S/c1-3-24(2)9-16-21-15(10-30-16)19(26)8-13(20-11-19)18-22-17(23-29-18)12-6-4-5-7-14(12)25(27)28/h1,4-7,10,13,20,26H,8-9,11H2,2H3/t13-,19-/m1/s1" 
JCI InChIKey         InChI                1.06  MEVOALTZQOOEHC-BFUOFWGJSA-N                                                                                                                                          
JCI SMILES_CANONICAL CACTVS               3.385 "CN(Cc1scc(n1)[C@]2(O)CN[C@H](C2)c3onc(n3)c4ccccc4[N](=O)=O)C#C"                                                                                                     
JCI SMILES           CACTVS               3.385 "CN(Cc1scc(n1)[C]2(O)CN[CH](C2)c3onc(n3)c4ccccc4[N](=O)=O)C#C"                                                                                                       
JCI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(Cc1nc(cs1)[C@]2(C[C@@H](NC2)c3nc(no3)c4ccccc4N(=O)=O)O)C#C"                                                                                                      
JCI SMILES           "OpenEye OEToolkits" 2.0.7 "CN(Cc1nc(cs1)C2(CC(NC2)c3nc(no3)c4ccccc4N(=O)=O)O)C#C"                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           JCI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{R},5~{R})-3-[2-[[ethynyl(methyl)amino]methyl]-1,3-thiazol-4-yl]-5-[3-(2-nitrophenyl)-1,2,4-oxadiazol-5-yl]pyrrolidin-3-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JCI "Create component" 2023-08-07 PDBE 
JCI "Initial release"  2024-08-14 RCSB 
# 
