data_DGI
# 
_chem_comp.id                                    DGI 
_chem_comp.name                                  "2'-DEOXYGUANOSINE-5'-DIPHOSPHATE" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H15 N5 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               DG 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2004-01-22 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        427.201 
_chem_comp.one_letter_code                       G 
_chem_comp.three_letter_code                     DGI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1S59 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DGI O1B    O1B  O 0 1 N N N 26.618 47.524 18.372 6.217  -0.345 0.783  O1B    DGI 1  
DGI PB     PB   P 0 1 N N N 27.440 47.745 17.001 5.709  -1.186 -0.324 PB     DGI 2  
DGI O2B    O2B  O 0 1 N N N 28.965 48.032 17.441 5.081  -2.541 0.276  O2B    DGI 3  
DGI O3B    O3B  O 0 1 N N N 27.321 46.594 16.074 6.921  -1.551 -1.320 O3B    DGI 4  
DGI O3A    O3A  O 0 1 N N N 26.907 49.144 16.393 4.574  -0.380 -1.134 O3A    DGI 5  
DGI PA     PA   P 0 1 N N S 26.045 49.233 15.031 3.688  0.400  -0.039 PA     DGI 6  
DGI O1A    O1A  O 0 1 N N N 24.792 49.954 15.364 3.479  -0.471 1.138  O1A    DGI 7  
DGI O2A    O2A  O 0 1 N N N 26.918 49.790 13.973 4.454  1.741  0.414  O2A    DGI 8  
DGI "O5'"  O5*  O 0 1 N N N 25.686 47.697 14.690 2.263  0.787  -0.681 "O5'"  DGI 9  
DGI "C5'"  C5*  C 0 1 N N N 25.016 47.363 13.470 1.482  1.367  0.367  "C5'"  DGI 10 
DGI "C4'"  C4*  C 0 1 N N R 24.897 45.846 13.290 0.108  1.759  -0.179 "C4'"  DGI 11 
DGI "O4'"  O4*  O 0 1 N N N 24.244 45.523 12.051 -0.686 0.585  -0.460 "O4'"  DGI 12 
DGI "C3'"  C3*  C 0 1 N N S 26.267 45.175 13.191 -0.716 2.505  0.902  "C3'"  DGI 13 
DGI "O3'"  O3*  O 0 1 N N N 26.764 44.929 14.509 -0.420 3.903  0.895  "O3'"  DGI 14 
DGI "C2'"  C2*  C 0 1 N N N 25.838 43.840 12.585 -2.170 2.246  0.438  "C2'"  DGI 15 
DGI "C1'"  C1*  C 0 1 N N R 24.789 44.283 11.562 -2.062 1.002  -0.465 "C1'"  DGI 16 
DGI N9     N9   N 0 1 Y N N 25.358 44.524 10.214 -2.910 -0.070 0.060  N9     DGI 17 
DGI C8     C8   C 0 1 Y N N 25.861 45.664 9.749  -2.514 -1.082 0.886  C8     DGI 18 
DGI N7     N7   N 0 1 Y N N 26.192 45.511 8.467  -3.525 -1.855 1.153  N7     DGI 19 
DGI C5     C5   C 0 1 Y N N 25.907 44.264 8.106  -4.627 -1.388 0.517  C5     DGI 20 
DGI C4     C4   C 0 1 Y N N 25.382 43.635 9.228  -4.245 -0.241 -0.188 C4     DGI 21 
DGI N3     N3   N 0 1 N N N 24.979 42.293 9.171  -5.153 0.425  -0.912 N3     DGI 22 
DGI C2     C2   C 0 1 N N N 25.102 41.577 7.977  -6.402 0.022  -0.972 C2     DGI 23 
DGI N2     N2   N 0 1 N N N 24.735 40.297 7.923  -7.297 0.738  -1.727 N2     DGI 24 
DGI N1     N1   N 0 1 N N N 25.630 42.216 6.849  -6.836 -1.083 -0.303 N1     DGI 25 
DGI C6     C6   C 0 1 N N N 26.030 43.557 6.915  -5.975 -1.810 0.444  C6     DGI 26 
DGI O6     O6   O 0 1 N N N 26.482 44.103 5.909  -6.353 -2.803 1.042  O6     DGI 27 
DGI HOB2   2HOB H 0 0 N N N 29.449 48.162 16.634 4.763  -3.059 -0.476 HOB2   DGI 28 
DGI HOB3   3HOB H 0 0 N N N 27.805 46.724 15.267 7.577  -2.031 -0.796 HOB3   DGI 29 
DGI HOA2   2HOA H 0 0 N N N 26.411 49.842 13.172 4.570  2.280  -0.381 HOA2   DGI 30 
DGI "H5'"  1H5* H 0 1 N N N 25.508 47.840 12.591 1.989  2.254  0.748  "H5'"  DGI 31 
DGI "H5''" 2H5* H 0 0 N N N 24.021 47.861 13.402 1.361  0.643  1.173  "H5''" DGI 32 
DGI "H4'"  H4*  H 0 1 N N N 24.327 45.488 14.179 0.212  2.373  -1.073 "H4'"  DGI 33 
DGI "H3'"  H3*  H 0 1 N N N 27.047 45.746 12.636 -0.540 2.077  1.889  "H3'"  DGI 34 
DGI "HO3'" *HO3 H 0 0 N Y N 27.615 44.512 14.448 -1.028 4.321  1.521  "HO3'" DGI 35 
DGI "H2'"  1H2* H 0 1 N N N 25.490 43.077 13.319 -2.547 3.097  -0.128 "H2'"  DGI 36 
DGI "H2''" 2H2* H 0 0 N N N 26.667 43.218 12.174 -2.812 2.041  1.294  "H2''" DGI 37 
DGI "H1'"  H1*  H 0 1 N N N 24.029 43.475 11.453 -2.369 1.254  -1.481 "H1'"  DGI 38 
DGI H8     H8   H 0 1 N N N 25.984 46.591 10.335 -1.511 -1.220 1.261  H8     DGI 39 
DGI HN21   1HN2 H 0 0 N N N 23.769 40.226 8.243  -7.004 1.529  -2.206 HN21   DGI 40 
DGI HN22   2HN2 H 0 0 N N N 24.825 39.775 7.052  -8.222 0.451  -1.785 HN22   DGI 41 
DGI HN1    HN1  H 0 1 N N N 25.724 41.701 5.973  -7.765 -1.353 -0.368 HN1    DGI 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DGI O1B   PB     DOUB N N 1  
DGI PB    O2B    SING N N 2  
DGI PB    O3B    SING N N 3  
DGI PB    O3A    SING N N 4  
DGI O2B   HOB2   SING N N 5  
DGI O3B   HOB3   SING N N 6  
DGI O3A   PA     SING N N 7  
DGI PA    O1A    DOUB N N 8  
DGI PA    O2A    SING N N 9  
DGI PA    "O5'"  SING N N 10 
DGI O2A   HOA2   SING N N 11 
DGI "O5'" "C5'"  SING N N 12 
DGI "C5'" "C4'"  SING N N 13 
DGI "C5'" "H5'"  SING N N 14 
DGI "C5'" "H5''" SING N N 15 
DGI "C4'" "O4'"  SING N N 16 
DGI "C4'" "C3'"  SING N N 17 
DGI "C4'" "H4'"  SING N N 18 
DGI "O4'" "C1'"  SING N N 19 
DGI "C3'" "O3'"  SING N N 20 
DGI "C3'" "C2'"  SING N N 21 
DGI "C3'" "H3'"  SING N N 22 
DGI "O3'" "HO3'" SING N N 23 
DGI "C2'" "C1'"  SING N N 24 
DGI "C2'" "H2'"  SING N N 25 
DGI "C2'" "H2''" SING N N 26 
DGI "C1'" N9     SING N N 27 
DGI "C1'" "H1'"  SING N N 28 
DGI N9    C8     SING Y N 29 
DGI N9    C4     SING Y N 30 
DGI C8    N7     DOUB Y N 31 
DGI C8    H8     SING N N 32 
DGI N7    C5     SING Y N 33 
DGI C5    C4     DOUB Y N 34 
DGI C5    C6     SING N N 35 
DGI C4    N3     SING N N 36 
DGI N3    C2     DOUB N N 37 
DGI C2    N2     SING N N 38 
DGI C2    N1     SING N N 39 
DGI N2    HN21   SING N N 40 
DGI N2    HN22   SING N N 41 
DGI N1    C6     SING N N 42 
DGI N1    HN1    SING N N 43 
DGI C6    O6     DOUB N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DGI SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O"                                                                                                                            
DGI SMILES_CANONICAL CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P@@](O)(=O)O[P](O)(O)=O)O3"                                                                                                     
DGI SMILES           CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                           
DGI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N"                                                                                                        
DGI SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N"                                                                                                                        
DGI InChI            InChI                1.03  "InChI=1S/C10H15N5O10P2/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(24-6)2-23-27(21,22)25-26(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1" 
DGI InChIKey         InChI                1.03  CIKGWCTVFSRMJU-KVQBGUIXSA-N                                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DGI "SYSTEMATIC NAME" ACDLabs              10.04 
;2'-deoxyguanosine 5'-(trihydrogen diphosphate)
;
DGI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DGI "Create component"  2004-01-22 RCSB 
DGI "Modify descriptor" 2011-06-04 RCSB 
# 
