data_C2I
#

_chem_comp.id                                   C2I
_chem_comp.name                                 "9-[(1R,6R,8R,9S,10R,15S,17R,18S)-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-17-(6-oxidanylidene-3H-purin-9-yl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]-3H-purin-6-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H22 N8 O14 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-11
_chem_comp.pdbx_modified_date                   2020-06-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       660.381
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    C2I
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6K6T
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C2I  "C1'"  C1   C  0  1  N  N  R   -9.511   4.497  -57.157   4.925  -1.044  -1.318  "C1'"  C2I   1  
C2I  C1A    C2   C  0  1  N  N  R   -7.876  -2.009  -62.791  -4.735  -1.474   0.327  C1A    C2I   2  
C2I  C2     C3   C  0  1  N  N  N  -12.291   7.349  -55.370   8.639   0.808   0.495  C2     C2I   3  
C2I  "C2'"  C4   C  0  1  N  N  S   -8.532   4.576  -58.001   4.516  -2.021  -0.204  "C2'"  C2I   4  
C2I  C21    C5   C  0  1  N  N  N   -4.905  -5.228  -63.674  -8.776   0.472  -0.296  C21    C2I   5  
C2I  C2A    C6   C  0  1  N  N  S   -8.691  -2.212  -61.767  -4.252  -1.559  -1.129  C2A    C2I   6  
C2I  "C3'"  C7   C  0  1  N  N  R   -8.791   3.182  -58.903   2.975  -2.045  -0.256  "C3'"  C2I   7  
C2I  C3A    C8   C  0  1  N  N  R   -9.275  -0.703  -61.312  -2.715  -1.447  -1.048  C3A    C2I   8  
C2I  C4     C9   C  0  1  Y  N  N  -10.484   5.849  -55.350   6.399   0.689  -0.230  C4     C2I   9  
C2I  "C4'"  C10  C  0  1  N  N  R   -9.246   2.232  -58.154   2.616  -1.401  -1.600  "C4'"  C2I  10  
C2I  C41    C11  C  0  1  Y  N  N   -5.600  -3.163  -62.918  -6.516   0.309   0.356  C41    C2I  11  
C2I  C4A    C12  C  0  1  N  N  S   -8.427   0.044  -61.803  -2.396  -1.465   0.455  C4A    C2I  12  
C2I  C5     C13  C  0  1  Y  N  N  -10.303   6.020  -54.013   6.208   2.003   0.189  C5     C2I  13  
C2I  "C5'"  C14  C  0  1  N  N  N   -8.109   1.204  -57.742   1.702  -0.196  -1.402  "C5'"  C2I  14  
C2I  C51    C15  C  0  1  Y  N  N   -4.288  -2.844  -62.580  -6.557   1.635   0.778  C51    C2I  15  
C2I  C5A    C16  C  0  1  N  N  N   -8.837   1.563  -61.900  -1.364  -2.553   0.761  C5A    C2I  16  
C2I  C6     C17  C  0  1  N  N  N  -11.179   6.912  -53.347   7.345   2.700   0.794  C6     C2I  17  
C2I  C61    C18  C  0  1  N  N  N   -3.289  -3.814  -62.821  -7.818   2.364   0.624  C61    C2I  18  
C2I  C8     C19  C  0  1  Y  N  N   -8.819   4.588  -54.740   4.330   1.312  -0.634  C8     C2I  19  
C2I  C81    C20  C  0  1  Y  N  N   -5.532  -1.180  -62.072  -4.558   0.901   1.161  C81    C2I  20  
C2I  N1     N1   N  0  1  N  N  N  -12.142   7.546  -54.080   8.514   2.040   0.904  N1     C2I  21  
C2I  N11    N2   N  0  1  N  N  N   -3.635  -4.964  -63.356  -8.868   1.716   0.083  N11    C2I  22  
C2I  N3     N3   N  0  1  N  N  N  -11.484   6.510  -56.015   7.630   0.116  -0.064  N3     C2I  23  
C2I  N31    N4   N  0  1  N  N  N   -5.861  -4.345  -63.470  -7.645  -0.247  -0.179  N31    C2I  24  
C2I  N7     N5   N  0  1  Y  N  N   -9.253   5.231  -53.668   4.925   2.331  -0.083  N7     C2I  25  
C2I  N71    N6   N  0  1  Y  N  N   -4.275  -1.604  -62.055  -5.332   1.943   1.262  N71    C2I  26  
C2I  N9     N7   N  0  1  Y  N  N   -9.528   4.996  -55.770   5.210   0.276  -0.749  N9     C2I  27  
C2I  N91    N8   N  0  1  Y  N  N   -6.353  -2.111  -62.572  -5.253  -0.133   0.605  N91    C2I  28  
C2I  O11    O1   O  0  1  N  N  N   -5.520   3.489  -60.865   0.505  -0.319   2.317  O11    C2I  29  
C2I  O1P    O2   O  0  1  N  N  N  -10.708  -1.394  -57.873  -0.683   1.611  -2.606  O1P    C2I  30  
C2I  "O2'"  O3   O  0  1  N  N  N   -7.125   4.672  -57.537   4.964  -1.546   1.066  "O2'"  C2I  31  
C2I  O21    O4   O  0  1  N  N  N   -7.638   4.513  -61.325   1.198  -2.735   2.530  O21    C2I  32  
C2I  O2A    O5   O  0  1  N  N  N   -8.105  -2.946  -60.632  -4.785  -0.475  -1.892  O2A    C2I  33  
C2I  O2P    O6   O  0  1  N  N  N   -8.571  -2.346  -58.471  -0.842   1.133  -0.137  O2P    C2I  34  
C2I  "O3'"  O7   O  0  1  N  N  N   -7.516   2.815  -59.423   2.434  -1.324   0.847  "O3'"  C2I  35  
C2I  O3A    O8   O  0  1  N  N  N   -9.450  -0.293  -59.894  -2.274  -0.253  -1.678  O3A    C2I  36  
C2I  "O4'"  O9   O  0  1  N  N  N   -9.754   2.978  -56.888   3.825  -0.963  -2.221  "O4'"  C2I  37  
C2I  O4A    O10  O  0  1  N  N  N   -8.179  -0.601  -63.248  -3.608  -1.743   1.162  O4A    C2I  38  
C2I  "O5'"  O11  O  0  1  N  N  N   -8.586  -0.072  -57.351   0.335  -0.582  -1.571  "O5'"  C2I  39  
C2I  O5A    O12  O  0  1  N  N  N   -7.609   2.251  -62.094  -0.055  -2.075   0.444  O5A    C2I  40  
C2I  O6     O13  O  0  1  N  N  N  -11.050   7.141  -51.942   7.238   3.853   1.180  O6     C2I  41  
C2I  O61    O14  O  0  1  N  N  N   -1.988  -3.567  -62.492  -7.915   3.529   0.976  O61    C2I  42  
C2I  P1     P1   P  0  1  N  N  N   -9.369  -1.018  -58.448  -0.872   0.486  -1.467  P1     C2I  43  
C2I  P11    P2   P  0  1  N  N  N   -7.057   3.223  -60.952   1.023  -1.638   1.554  P11    C2I  44  
C2I  H1     H1   H  0  1  N  N  N  -10.430   4.866  -57.637   5.807  -1.421  -1.837  H1     C2I  45  
C2I  H2     H2   H  0  1  N  N  N   -8.131  -2.688  -63.618  -5.514  -2.216   0.504  H2     C2I  46  
C2I  H3     H3   H  0  1  N  N  N  -13.070   7.869  -55.908   9.598   0.323   0.605  H3     C2I  47  
C2I  H4     H4   H  0  1  N  N  N   -8.704   5.409  -58.699   4.918  -3.014  -0.403  H4     C2I  48  
C2I  H5     H5   H  0  1  N  N  N   -5.153  -6.185  -64.107  -9.649  -0.004  -0.719  H5     C2I  49  
C2I  H6     H6   H  0  1  N  N  N   -9.574  -2.775  -62.105  -4.540  -2.512  -1.571  H6     C2I  50  
C2I  H7     H7   H  0  1  N  N  N   -9.479   3.445  -59.720   2.638  -3.087  -0.227  H7     C2I  51  
C2I  H8     H8   H  0  1  N  N  N  -10.248  -0.597  -61.815  -2.270  -2.320  -1.536  H8     C2I  52  
C2I  H9     H9   H  0  1  N  N  N  -10.080   1.677  -58.609   2.139  -2.147  -2.241  H9     C2I  53  
C2I  H10    H10  H  0  1  N  N  N   -7.470  -0.001  -61.263  -2.026  -0.493   0.774  H10    C2I  54  
C2I  H11    H11  H  0  1  N  N  N   -7.437   1.071  -58.603   1.841   0.226  -0.410  H11    C2I  55  
C2I  H12    H12  H  0  1  N  N  N   -7.546   1.633  -56.900   1.948   0.566  -2.147  H12    C2I  56  
C2I  H13    H13  H  0  1  N  N  N   -9.326   1.894  -60.972  -1.412  -2.809   1.819  H13    C2I  57  
C2I  H14    H14  H  0  1  N  N  N   -9.515   1.729  -62.750  -1.583  -3.438   0.164  H14    C2I  58  
C2I  H15    H15  H  0  1  N  N  N   -8.024   3.858  -54.765   3.299   1.291  -0.955  H15    C2I  59  
C2I  H16    H16  H  0  1  N  N  N   -5.852  -0.208  -61.727  -3.524   0.861   1.470  H16    C2I  60  
C2I  H18    H18  H  0  1  N  N  N  -11.609   6.360  -56.996   7.777  -0.798  -0.351  H18    C2I  61  
C2I  H19    H19  H  0  1  N  N  N   -5.344   4.400  -61.070  -0.341  -0.435   2.771  H19    C2I  62  
C2I  H20    H20  H  0  1  N  N  N  -10.719  -2.324  -57.677   0.148   2.100  -2.543  H20    C2I  63  
C2I  H21    H21  H  0  1  N  N  N   -7.011   5.468  -57.032   5.925  -1.461   1.138  H21    C2I  64  
C2I  H22    H22  H  0  1  N  N  N   -8.406  -2.562  -59.817  -5.751  -0.465  -1.939  H22    C2I  65  
C2I  H17    H17  H  0  1  N  N  N   -6.799  -4.567  -63.735  -7.630  -1.170  -0.478  H17    C2I  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C2I  C21    N31    SING  N  N   1  
C2I  C21    N11    DOUB  N  N   2  
C2I  N31    C41    SING  N  N   3  
C2I  N11    C61    SING  N  N   4  
C2I  O4A    C1A    SING  N  N   5  
C2I  O4A    C4A    SING  N  N   6  
C2I  C41    C51    DOUB  Y  N   7  
C2I  C41    N91    SING  Y  N   8  
C2I  C61    C51    SING  N  N   9  
C2I  C61    O61    DOUB  N  N  10  
C2I  C1A    N91    SING  N  N  11  
C2I  C1A    C2A    SING  N  N  12  
C2I  C51    N71    SING  Y  N  13  
C2I  N91    C81    SING  Y  N  14  
C2I  O5A    C5A    SING  N  N  15  
C2I  O5A    P11    SING  N  N  16  
C2I  C81    N71    DOUB  Y  N  17  
C2I  C5A    C4A    SING  N  N  18  
C2I  C4A    C3A    SING  N  N  19  
C2I  C2A    C3A    SING  N  N  20  
C2I  C2A    O2A    SING  N  N  21  
C2I  O21    P11    DOUB  N  N  22  
C2I  C3A    O3A    SING  N  N  23  
C2I  P11    O11    SING  N  N  24  
C2I  P11    "O3'"  SING  N  N  25  
C2I  O3A    P1     SING  N  N  26  
C2I  "O3'"  "C3'"  SING  N  N  27  
C2I  "C3'"  "C4'"  SING  N  N  28  
C2I  "C3'"  "C2'"  SING  N  N  29  
C2I  O2P    P1     DOUB  N  N  30  
C2I  P1     O1P    SING  N  N  31  
C2I  P1     "O5'"  SING  N  N  32  
C2I  "C4'"  "C5'"  SING  N  N  33  
C2I  "C4'"  "O4'"  SING  N  N  34  
C2I  "C2'"  "O2'"  SING  N  N  35  
C2I  "C2'"  "C1'"  SING  N  N  36  
C2I  "C5'"  "O5'"  SING  N  N  37  
C2I  "C1'"  "O4'"  SING  N  N  38  
C2I  "C1'"  N9     SING  N  N  39  
C2I  N3     C2     SING  N  N  40  
C2I  N3     C4     SING  N  N  41  
C2I  N9     C4     SING  Y  N  42  
C2I  N9     C8     SING  Y  N  43  
C2I  C2     N1     DOUB  N  N  44  
C2I  C4     C5     DOUB  Y  N  45  
C2I  C8     N7     DOUB  Y  N  46  
C2I  N1     C6     SING  N  N  47  
C2I  C5     N7     SING  Y  N  48  
C2I  C5     C6     SING  N  N  49  
C2I  C6     O6     DOUB  N  N  50  
C2I  "C1'"  H1     SING  N  N  51  
C2I  C1A    H2     SING  N  N  52  
C2I  C2     H3     SING  N  N  53  
C2I  "C2'"  H4     SING  N  N  54  
C2I  C21    H5     SING  N  N  55  
C2I  C2A    H6     SING  N  N  56  
C2I  "C3'"  H7     SING  N  N  57  
C2I  C3A    H8     SING  N  N  58  
C2I  "C4'"  H9     SING  N  N  59  
C2I  C4A    H10    SING  N  N  60  
C2I  "C5'"  H11    SING  N  N  61  
C2I  "C5'"  H12    SING  N  N  62  
C2I  C5A    H13    SING  N  N  63  
C2I  C5A    H14    SING  N  N  64  
C2I  C8     H15    SING  N  N  65  
C2I  C81    H16    SING  N  N  66  
C2I  N3     H18    SING  N  N  67  
C2I  O11    H19    SING  N  N  68  
C2I  O1P    H20    SING  N  N  69  
C2I  "O2'"  H21    SING  N  N  70  
C2I  O2A    H22    SING  N  N  71  
C2I  N31    H17    SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C2I  InChI             InChI                 1.03   "InChI=1S/C20H22N8O14P2/c29-11-13-7(39-19(11)27-5-25-9-15(27)21-3-23-17(9)31)1-37-43(33,34)42-14-8(2-38-44(35,36)41-13)40-20(12(14)30)28-6-26-10-16(28)22-4-24-18(10)32/h3-8,11-14,19-20,29-30H,1-2H2,(H,33,34)(H,35,36)(H,21,23,31)(H,22,24,32)/t7-,8+,11-,12-,13-,14-,19+,20+/m0/s1"  
C2I  InChIKey          InChI                 1.03   VFTRASQVWRBMKD-PHSICLOESA-N  
C2I  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@H]2O[P](O)(=O)OC[C@@H]3O[C@H]([C@@H](O)[C@H]3O[P](O)(=O)OC[C@H]2O[C@H]1n4cnc5C(=O)N=CNc45)n6cnc7C(=O)N=CNc67"  
C2I  SMILES            CACTVS                3.385  "O[CH]1[CH]2O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O[P](O)(=O)OC[CH]2O[CH]1n4cnc5C(=O)N=CNc45)n6cnc7C(=O)N=CNc67"  
C2I  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1[C@H]3[C@H]([C@@H]4[C@H](O3)COP(=O)(O[C@H]5[C@H](COP(=O)(O4)O)O[C@H]([C@H]5O)n6cnc7c6NC=NC7=O)O)O)NC=NC2=O"  
C2I  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1C3C(C4C(O3)COP(=O)(OC5C(COP(=O)(O4)O)OC(C5O)n6cnc7c6NC=NC7=O)O)O)NC=NC2=O"  
#
_pdbx_chem_comp_identifier.comp_id          C2I
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "9-[(1~{R},6~{R},8~{R},9~{S},10~{R},15~{S},17~{R},18~{S})-3,9,12,18-tetrakis(oxidanyl)-3,12-bis(oxidanylidene)-17-(6-oxidanylidene-3~{H}-purin-9-yl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]-3~{H}-purin-6-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C2I  "Create component"  2019-06-11  PDBJ  
C2I  "Initial release"   2020-06-17  RCSB  
##
