data_XSH
# 
_chem_comp.id                                    XSH 
_chem_comp.name                                  "~{N}-[(2~{R})-1-[4-[[2,4-bis(azanyl)quinazolin-5-yl]oxymethyl]piperidin-1-yl]-1-oxidanylidene-pent-4-yn-2-yl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H26 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-09 
_chem_comp.pdbx_modified_date                    2024-11-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        410.470 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XSH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R3I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
XSH N1  N1  N 0 1 N N N 11.557 -11.002 14.585 7.602  2.676  -0.020 N1  XSH 1  N N N 
XSH C1  C1  C 0 1 Y N N 10.612 -11.925 14.468 6.578  1.747  0.024  C1  XSH 2  N N N 
XSH N2  N2  N 0 1 Y N N 9.375  -11.590 14.923 5.393  2.081  -0.477 N2  XSH 3  N N N 
XSH C2  C2  C 0 1 Y N N 8.394  -12.474 14.803 4.374  1.233  -0.464 C2  XSH 4  N N N 
XSH C3  C3  C 0 1 Y N N 8.615  -13.786 14.226 4.574  -0.049 0.100  C3  XSH 5  N N N 
XSH C4  C4  C 0 1 Y N N 7.641  -14.840 14.079 3.548  -1.007 0.154  C4  XSH 6  N N N 
XSH C5  C5  C 0 1 Y N N 7.983  -16.042 13.511 3.806  -2.241 0.717  C5  XSH 7  N N N 
XSH C6  C6  C 0 1 Y N N 9.307  -16.256 13.096 5.063  -2.539 1.228  C6  XSH 8  N N N 
XSH C7  C7  C 0 1 Y N N 10.268 -15.289 13.218 6.075  -1.625 1.187  C7  XSH 9  N N N 
XSH C8  C8  C 0 1 Y N N 9.950  -14.050 13.810 5.852  -0.362 0.623  C8  XSH 10 N N N 
XSH N3  N3  N 0 1 Y N N 10.950 -13.103 13.900 6.821  0.564  0.558  N3  XSH 11 N N N 
XSH O1  O1  O 0 1 N N N 6.388  -14.587 14.509 2.318  -0.722 -0.343 O1  XSH 12 N N N 
XSH C9  C9  C 0 1 N N N 5.375  -15.615 14.519 1.328  -1.749 -0.251 C9  XSH 13 N N N 
XSH C10 C10 C 0 1 N N N 4.020  -14.983 14.775 0.016  -1.248 -0.857 C10 XSH 14 N N N 
XSH C11 C11 C 0 1 N N N 2.915  -16.031 14.654 -1.007 -2.387 -0.873 C11 XSH 15 N N N 
XSH C12 C12 C 0 1 N N N 1.562  -15.458 15.037 -2.307 -1.891 -1.512 C12 XSH 16 N N N 
XSH N4  N4  N 0 1 N N N 1.597  -14.934 16.412 -2.756 -0.688 -0.799 N4  XSH 17 N N N 
XSH C13 C13 C 0 1 N N N 2.591  -13.859 16.588 -1.819 0.434  -0.648 C13 XSH 18 N N N 
XSH C14 C14 C 0 1 N N N 3.981  -14.310 16.155 -0.524 -0.087 -0.018 C14 XSH 19 N N N 
XSH C15 C15 C 0 1 N N N 0.871  -15.361 17.474 -4.004 -0.613 -0.294 C15 XSH 20 N N N 
XSH O2  O2  O 0 1 N N N 0.757  -14.672 18.502 -4.768 -1.546 -0.426 O2  XSH 21 N N N 
XSH C16 C16 C 0 1 N N R 0.211  -16.738 17.583 -4.449 0.628  0.434  C16 XSH 22 N N N 
XSH C17 C17 C 0 1 N N N 0.392  -17.889 16.601 -4.837 1.704  -0.582 C17 XSH 23 N N N 
XSH C18 C18 C 0 1 N N N -0.837 -18.082 15.817 -5.157 2.955  0.126  C18 XSH 24 N N N 
XSH C19 C19 C 0 1 N N N -1.762 -18.450 15.166 -5.412 3.952  0.690  C19 XSH 25 N N N 
XSH N5  N5  N 0 1 N N N 0.735  -17.175 18.875 -5.605 0.312  1.276  N5  XSH 26 N N N 
XSH C20 C20 C 0 1 N N N 1.915  -17.753 19.115 -6.737 -0.161 0.718  C20 XSH 27 N N N 
XSH O3  O3  O 0 1 N N N 2.789  -17.954 18.242 -6.798 -0.325 -0.482 O3  XSH 28 N N N 
XSH C21 C21 C 0 1 N N N 2.042  -18.180 20.566 -7.926 -0.486 1.584  C21 XSH 29 N N N 
XSH N6  N6  N 0 1 N N N 7.204  -12.062 15.255 3.150  1.591  -0.987 N6  XSH 30 N N N 
XSH H1  H1  H 0 1 N N N 11.172 -10.182 15.009 7.447  3.550  -0.411 H1  XSH 31 N N N 
XSH H2  H2  H 0 1 N N N 12.299 -11.355 15.155 8.474  2.455  0.344  H2  XSH 32 N N N 
XSH H3  H3  H 0 1 N N N 7.240  -16.816 13.385 3.021  -2.982 0.761  H3  XSH 33 N N N 
XSH H4  H4  H 0 1 N N N 9.575  -17.211 12.668 5.242  -3.510 1.665  H4  XSH 34 N N N 
XSH H5  H5  H 0 1 N N N 11.270 -15.475 12.861 7.046  -1.874 1.589  H5  XSH 35 N N N 
XSH H7  H6  H 0 1 N N N 5.363  -16.128 13.546 1.667  -2.630 -0.796 H7  XSH 36 N N N 
XSH H6  H7  H 0 1 N N N 5.597  -16.342 15.314 1.169  -2.008 0.796  H6  XSH 37 N N N 
XSH H8  H8  H 0 1 N N N 3.847  -14.210 14.011 0.194  -0.906 -1.877 H8  XSH 38 N N N 
XSH H10 H9  H 0 1 N N N 2.871  -16.386 13.614 -0.612 -3.222 -1.451 H10 XSH 39 N N N 
XSH H9  H10 H 0 1 N N N 3.148  -16.875 15.320 -1.204 -2.712 0.149  H9  XSH 40 N N N 
XSH H12 H11 H 0 1 N N N 1.305  -14.643 14.345 -2.131 -1.651 -2.560 H12 XSH 41 N N N 
XSH H11 H12 H 0 1 N N N 0.801  -16.250 14.970 -3.070 -2.667 -1.436 H11 XSH 42 N N N 
XSH H14 H13 H 0 1 N N N 2.291  -12.992 15.982 -1.603 0.864  -1.625 H14 XSH 43 N N N 
XSH H13 H14 H 0 1 N N N 2.623  -13.571 17.649 -2.260 1.193  -0.001 H13 XSH 44 N N N 
XSH H15 H15 H 0 1 N N N 4.359  -15.026 16.899 -0.726 -0.435 0.995  H15 XSH 45 N N N 
XSH H16 H16 H 0 1 N N N 4.638  -13.428 16.128 0.215  0.714  0.012  H16 XSH 46 N N N 
XSH H17 H17 H 0 1 N N N -0.871 -16.571 17.694 -3.634 0.995  1.059  H17 XSH 47 N N N 
XSH H19 H18 H 0 1 N N N 1.225  -17.659 15.921 -4.005 1.876  -1.265 H19 XSH 48 N N N 
XSH H18 H19 H 0 1 N N N 0.617  -18.811 17.158 -5.709 1.373  -1.146 H18 XSH 49 N N N 
XSH H20 H20 H 0 1 N N N -2.586 -18.778 14.586 -5.640 4.844  1.195  H20 XSH 50 N N N 
XSH H21 H21 H 0 1 N N N 0.144  -17.025 19.668 -5.556 0.443  2.236  H21 XSH 51 N N N 
XSH H23 H22 H 0 1 N N N 3.008  -18.684 20.717 -8.248 0.412  2.111  H23 XSH 52 N N N 
XSH H22 H23 H 0 1 N N N 1.985  -17.294 21.215 -8.741 -0.853 0.960  H22 XSH 53 N N N 
XSH H26 H24 H 0 1 N N N 1.225  -18.872 20.817 -7.649 -1.253 2.308  H26 XSH 54 N N N 
XSH H24 H25 H 0 1 N N N 7.286  -11.131 15.610 2.523  0.906  -1.269 H24 XSH 55 N N N 
XSH H25 H26 H 0 1 N N N 6.540  -12.076 14.507 2.915  2.528  -1.074 H25 XSH 56 N N N 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XSH N1  C1  SING N N 1  
XSH C1  N2  DOUB Y N 2  
XSH C1  N3  SING Y N 3  
XSH N2  C2  SING Y N 4  
XSH C2  C3  DOUB Y N 5  
XSH C2  N6  SING N N 6  
XSH C3  C4  SING Y N 7  
XSH C3  C8  SING Y N 8  
XSH C4  C5  DOUB Y N 9  
XSH C4  O1  SING N N 10 
XSH C5  C6  SING Y N 11 
XSH C6  C7  DOUB Y N 12 
XSH C7  C8  SING Y N 13 
XSH C8  N3  DOUB Y N 14 
XSH O1  C9  SING N N 15 
XSH C9  C10 SING N N 16 
XSH C10 C11 SING N N 17 
XSH C10 C14 SING N N 18 
XSH C11 C12 SING N N 19 
XSH C12 N4  SING N N 20 
XSH N4  C13 SING N N 21 
XSH N4  C15 SING N N 22 
XSH C13 C14 SING N N 23 
XSH C15 O2  DOUB N N 24 
XSH C15 C16 SING N N 25 
XSH C16 C17 SING N N 26 
XSH C16 N5  SING N N 27 
XSH C17 C18 SING N N 28 
XSH C18 C19 TRIP N N 29 
XSH N5  C20 SING N N 30 
XSH C20 O3  DOUB N N 31 
XSH C20 C21 SING N N 32 
XSH N1  H1  SING N N 33 
XSH N1  H2  SING N N 34 
XSH C5  H3  SING N N 35 
XSH C6  H4  SING N N 36 
XSH C7  H5  SING N N 37 
XSH C9  H7  SING N N 38 
XSH C9  H6  SING N N 39 
XSH C10 H8  SING N N 40 
XSH C11 H10 SING N N 41 
XSH C11 H9  SING N N 42 
XSH C12 H12 SING N N 43 
XSH C12 H11 SING N N 44 
XSH C13 H14 SING N N 45 
XSH C13 H13 SING N N 46 
XSH C14 H15 SING N N 47 
XSH C14 H16 SING N N 48 
XSH C16 H17 SING N N 49 
XSH C17 H19 SING N N 50 
XSH C17 H18 SING N N 51 
XSH C19 H20 SING N N 52 
XSH N5  H21 SING N N 53 
XSH C21 H23 SING N N 54 
XSH C21 H22 SING N N 55 
XSH C21 H26 SING N N 56 
XSH N6  H24 SING N N 57 
XSH N6  H25 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XSH InChI            InChI                1.06  "InChI=1S/C21H26N6O3/c1-3-5-16(24-13(2)28)20(29)27-10-8-14(9-11-27)12-30-17-7-4-6-15-18(17)19(22)26-21(23)25-15/h1,4,6-7,14,16H,5,8-12H2,2H3,(H,24,28)(H4,22,23,25,26)/t16-/m1/s1" 
XSH InChIKey         InChI                1.06  KEUMDTOQJJKEPR-MRXNPFEDSA-N                                                                                                                                                        
XSH SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@H](CC#C)C(=O)N1CCC(CC1)COc2cccc3nc(N)nc(N)c23"                                                                                                                          
XSH SMILES           CACTVS               3.385 "CC(=O)N[CH](CC#C)C(=O)N1CCC(CC1)COc2cccc3nc(N)nc(N)c23"                                                                                                                           
XSH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@H](CC#C)C(=O)N1CCC(CC1)COc2cccc3c2c(nc(n3)N)N"                                                                                                                          
XSH SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CC#C)C(=O)N1CCC(CC1)COc2cccc3c2c(nc(n3)N)N"                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           XSH 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{R})-1-[4-[[2,4-bis(azanyl)quinazolin-5-yl]oxymethyl]piperidin-1-yl]-1-oxidanylidene-pent-4-yn-2-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XSH "Create component" 2023-11-09 PDBE 
XSH "Modify PCM"       2024-09-27 PDBE 
XSH "Initial release"  2024-11-20 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XSH 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C21 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
