data_UPH
# 
_chem_comp.id                                    UPH 
_chem_comp.name                                  "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-(6-{2-nitro-4-[(1R,5S)-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]anilino}hexyl)piperidine-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H38 N4 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-23 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        494.581 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UPH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8E5U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UPH N1  N1  N 0  1 N N N -35.573 -30.677 -69.067 6.436   -0.019 -0.007 N1  UPH 1  
UPH N3  N2  N 1  1 N N N -40.245 -28.052 -61.573 -4.287  3.084  0.775  N3  UPH 2  
UPH C4  C1  C 0  1 N N N -33.889 -29.077 -68.318 7.563   1.842  -1.129 C4  UPH 3  
UPH C5  C2  C 0  1 N N N -36.625 -29.974 -68.366 5.295   0.876  0.228  C5  UPH 4  
UPH C6  C3  C 0  1 N N N -36.429 -30.285 -66.860 3.992   0.123  -0.049 C6  UPH 5  
UPH C7  C4  C 0  1 N N N -37.772 -30.206 -66.175 2.803   1.055  0.195  C7  UPH 6  
UPH C8  C5  C 0  1 N N N -37.796 -29.870 -64.681 1.500   0.303  -0.081 C8  UPH 7  
UPH C10 C6  C 0  1 N N N -39.280 -30.574 -62.686 -0.992  0.482  -0.114 C10 UPH 8  
UPH C13 C7  C 0  1 Y N N -42.630 -27.468 -62.061 -5.805  1.261  0.056  C13 UPH 9  
UPH C15 C8  C 0  1 N N S -45.852 -26.702 -61.626 -7.323  -1.871 -1.173 C15 UPH 10 
UPH C17 C9  C 0  1 N N N -45.257 -25.605 -64.369 -9.507  -0.925 0.346  C17 UPH 11 
UPH C20 C10 C 0  1 N N N -46.012 -25.242 -61.080 -6.957  -2.747 0.049  C20 UPH 12 
UPH C21 C11 C 0  1 Y N N -44.144 -29.072 -63.155 -4.939  -0.831 -0.754 C21 UPH 13 
UPH C22 C12 C 0  1 Y N N -43.182 -29.993 -63.220 -3.651  -0.370 -0.568 C22 UPH 14 
UPH C24 C13 C 0  1 N N S -34.946 -32.708 -70.188 7.612   -2.060 0.666  C24 UPH 15 
UPH C1  C14 C 0  1 N N R -33.571 -32.670 -69.565 8.949   -1.318 0.576  C1  UPH 16 
UPH C11 C15 C 0  1 Y N N -41.758 -29.702 -62.683 -3.436  0.908  -0.069 C11 UPH 17 
UPH C12 C16 C 0  1 Y N N -41.516 -28.506 -62.135 -4.517  1.722  0.243  C12 UPH 18 
UPH C14 C17 C 0  1 Y N N -43.837 -27.700 -62.518 -6.020  -0.017 -0.443 C14 UPH 19 
UPH C16 C18 C 0  1 N N N -47.001 -27.043 -62.533 -8.776  -2.200 -1.559 C16 UPH 20 
UPH C18 C19 C 0  1 N N R -44.621 -25.473 -62.996 -8.031  -0.638 0.671  C18 UPH 21 
UPH C19 C20 C 0  1 N N N -45.427 -24.435 -62.127 -7.426  -1.929 1.271  C19 UPH 22 
UPH C2  C21 C 0  1 N N R -33.265 -31.192 -69.403 8.835   -0.203 -0.467 C2  UPH 23 
UPH C23 C22 C 0  1 N N N -35.895 -32.095 -69.144 6.505   -1.065 1.022  C23 UPH 24 
UPH C3  C23 C 0  1 N N R -34.256 -30.551 -68.449 7.693   0.738  -0.079 C3  UPH 25 
UPH C9  C24 C 0  1 N N N -38.523 -31.035 -63.952 0.312   1.235  0.163  C9  UPH 26 
UPH N2  N3  N 0  1 N N N -40.737 -30.747 -62.778 -2.130  1.375  0.120  N2  UPH 27 
UPH N4  N4  N 0  1 N N N -44.793 -26.607 -62.380 -7.326  -0.484 -0.632 N4  UPH 28 
UPH O1  O1  O 0  1 N N N -32.662 -33.193 -70.487 9.977   -2.232 0.189  O1  UPH 29 
UPH O2  O2  O 0  1 N N N -31.953 -31.052 -68.918 10.061  0.530  -0.517 O2  UPH 30 
UPH O3  O3  O 0  1 N N N -34.036 -28.487 -69.610 7.360   1.255  -2.416 O3  UPH 31 
UPH O4  O4  O 0  1 N N N -39.519 -28.793 -61.012 -5.017  3.529  1.643  O4  UPH 32 
UPH O5  O5  O -1 1 N N N -39.958 -26.900 -61.658 -3.370  3.760  0.345  O5  UPH 33 
UPH O6  O6  O 0  1 N N N -46.586 -26.667 -64.138 -9.589  -2.152 -0.384 O6  UPH 34 
UPH O7  O7  O 0  1 N N N -35.195 -34.063 -70.417 7.692   -3.066 1.678  O7  UPH 35 
UPH H2  H2  H 0  1 N N N -34.561 -28.584 -67.600 6.714   2.480  -0.883 H2  UPH 36 
UPH H3  H3  H 0  1 N N N -32.849 -28.977 -67.975 8.474   2.440  -1.142 H3  UPH 37 
UPH H4  H4  H 0  1 N N N -36.544 -28.892 -68.545 5.306   1.214  1.264  H4  UPH 38 
UPH H5  H5  H 0  1 N N N -37.610 -30.329 -68.703 5.366   1.736  -0.437 H5  UPH 39 
UPH H6  H6  H 0  1 N N N -36.011 -31.296 -66.741 3.981   -0.216 -1.085 H6  UPH 40 
UPH H7  H7  H 0  1 N N N -35.742 -29.550 -66.416 3.921   -0.738 0.616  H7  UPH 41 
UPH H8  H8  H 0  1 N N N -38.359 -29.434 -66.694 2.814   1.394  1.231  H8  UPH 42 
UPH H9  H9  H 0  1 N N N -38.261 -31.184 -66.299 2.874   1.916  -0.470 H9  UPH 43 
UPH H10 H10 H 0  1 N N N -36.768 -29.773 -64.301 1.489   -0.036 -1.117 H10 UPH 44 
UPH H11 H11 H 0  1 N N N -38.339 -28.927 -64.517 1.429   -0.558 0.584  H11 UPH 45 
UPH H12 H12 H 0  1 N N N -38.913 -31.158 -61.829 -1.003  0.143  -1.150 H12 UPH 46 
UPH H13 H13 H 0  1 N N N -39.066 -29.508 -62.521 -1.062  -0.379 0.551  H13 UPH 47 
UPH H14 H14 H 0  1 N N N -42.418 -26.507 -61.616 -6.645  1.893  0.303  H14 UPH 48 
UPH H15 H15 H 0  1 N N N -45.768 -27.418 -60.795 -6.631  -2.005 -2.004 H15 UPH 49 
UPH H16 H16 H 0  1 N N N -45.602 -24.626 -64.732 -10.075 -1.013 1.273  H16 UPH 50 
UPH H17 H17 H 0  1 N N N -44.542 -26.031 -65.088 -9.914  -0.112 -0.255 H17 UPH 51 
UPH H19 H19 H 0  1 N N N -47.072 -24.989 -60.933 -7.483  -3.700 0.005  H19 UPH 52 
UPH H20 H20 H 0  1 N N N -45.469 -25.113 -60.132 -5.879  -2.908 0.091  H20 UPH 53 
UPH H21 H21 H 0  1 N N N -45.129 -29.284 -63.544 -5.107  -1.825 -1.142 H21 UPH 54 
UPH H22 H22 H 0  1 N N N -43.399 -30.958 -63.654 -2.810  -1.004 -0.810 H22 UPH 55 
UPH H23 H23 H 0  1 N N N -34.967 -32.116 -71.115 7.389   -2.525 -0.294 H23 UPH 56 
UPH H24 H24 H 0  1 N N N -33.555 -33.190 -68.596 9.191   -0.886 1.547  H24 UPH 57 
UPH H25 H25 H 0  1 N N N -47.224 -28.117 -62.454 -9.135  -1.469 -2.283 H25 UPH 58 
UPH H26 H26 H 0  1 N N N -47.887 -26.462 -62.237 -8.821  -3.199 -1.994 H26 UPH 59 
UPH H27 H27 H 0  1 N N N -43.571 -25.157 -63.082 -7.910  0.224  1.327  H27 UPH 60 
UPH H28 H28 H 0  1 N N N -46.208 -23.945 -62.727 -8.183  -2.480 1.829  H28 UPH 61 
UPH H29 H29 H 0  1 N N N -44.756 -23.672 -61.705 -6.579  -1.688 1.915  H29 UPH 62 
UPH H30 H30 H 0  1 N N N -33.359 -30.705 -70.385 8.631   -0.639 -1.445 H30 UPH 63 
UPH H31 H31 H 0  1 N N N -35.741 -32.572 -68.165 6.722   -0.611 1.988  H31 UPH 64 
UPH H32 H32 H 0  1 N N N -36.941 -32.230 -69.457 5.550   -1.588 1.072  H32 UPH 65 
UPH H33 H33 H 0  1 N N N -34.223 -31.045 -67.467 7.904   1.184  0.893  H33 UPH 66 
UPH H34 H34 H 0  1 N N N -39.245 -31.488 -64.647 0.323   1.574  1.199  H34 UPH 67 
UPH H35 H35 H 0  1 N N N -37.775 -31.787 -63.659 0.382   2.095  -0.502 H35 UPH 68 
UPH H36 H36 H 0  1 N N N -40.889 -31.175 -63.669 -1.978  2.289  0.406  H36 UPH 69 
UPH H37 H37 H 0  1 N N N -31.788 -33.178 -70.114 10.101  -2.968 0.803  H37 UPH 70 
UPH H38 H38 H 0  1 N N N -31.751 -30.130 -68.813 10.830  -0.006 -0.754 H38 UPH 71 
UPH H39 H39 H 0  1 N N N -33.814 -27.564 -69.564 7.269   1.898  -3.132 H39 UPH 72 
UPH H41 H41 H 0  1 N N N -36.053 -34.165 -70.812 6.879   -3.577 1.789  H41 UPH 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UPH N1  C5  SING N N 1  
UPH N1  C23 SING N N 2  
UPH N1  C3  SING N N 3  
UPH N3  C12 SING N N 4  
UPH N3  O4  DOUB N N 5  
UPH N3  O5  SING N N 6  
UPH C4  C3  SING N N 7  
UPH C4  O3  SING N N 8  
UPH C5  C6  SING N N 9  
UPH C6  C7  SING N N 10 
UPH C7  C8  SING N N 11 
UPH C8  C9  SING N N 12 
UPH C10 C9  SING N N 13 
UPH C10 N2  SING N N 14 
UPH C13 C12 DOUB Y N 15 
UPH C13 C14 SING Y N 16 
UPH C15 C20 SING N N 17 
UPH C15 C16 SING N N 18 
UPH C15 N4  SING N N 19 
UPH C17 C18 SING N N 20 
UPH C20 C19 SING N N 21 
UPH C21 C22 SING Y N 22 
UPH C21 C14 DOUB Y N 23 
UPH C22 C11 DOUB Y N 24 
UPH C24 C1  SING N N 25 
UPH C24 C23 SING N N 26 
UPH C24 O7  SING N N 27 
UPH C1  C2  SING N N 28 
UPH C1  O1  SING N N 29 
UPH C11 C12 SING Y N 30 
UPH C11 N2  SING N N 31 
UPH C14 N4  SING N N 32 
UPH C18 C19 SING N N 33 
UPH C18 N4  SING N N 34 
UPH C2  C3  SING N N 35 
UPH C2  O2  SING N N 36 
UPH C16 O6  SING N N 37 
UPH C4  H2  SING N N 38 
UPH C4  H3  SING N N 39 
UPH C5  H4  SING N N 40 
UPH C5  H5  SING N N 41 
UPH C6  H6  SING N N 42 
UPH C6  H7  SING N N 43 
UPH C7  H8  SING N N 44 
UPH C7  H9  SING N N 45 
UPH C8  H10 SING N N 46 
UPH C8  H11 SING N N 47 
UPH C10 H12 SING N N 48 
UPH C10 H13 SING N N 49 
UPH C13 H14 SING N N 50 
UPH C15 H15 SING N N 51 
UPH C17 H16 SING N N 52 
UPH C17 H17 SING N N 53 
UPH C20 H19 SING N N 54 
UPH C20 H20 SING N N 55 
UPH C21 H21 SING N N 56 
UPH C22 H22 SING N N 57 
UPH C24 H23 SING N N 58 
UPH C1  H24 SING N N 59 
UPH C16 H25 SING N N 60 
UPH C16 H26 SING N N 61 
UPH C18 H27 SING N N 62 
UPH C19 H28 SING N N 63 
UPH C19 H29 SING N N 64 
UPH C2  H30 SING N N 65 
UPH C23 H31 SING N N 66 
UPH C23 H32 SING N N 67 
UPH C3  H33 SING N N 68 
UPH C9  H34 SING N N 69 
UPH C9  H35 SING N N 70 
UPH N2  H36 SING N N 71 
UPH O1  H37 SING N N 72 
UPH O2  H38 SING N N 73 
UPH O3  H39 SING N N 74 
UPH O7  H41 SING N N 75 
UPH O6  C17 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UPH SMILES           ACDLabs              12.01 "OCC1C(O)C(O)C(O)CN1CCCCCCNc1ccc(cc1[N+]([O-])=O)N1C2CCC1COC2"                                                                                                                                                
UPH InChI            InChI                1.06  "InChI=1S/C24H38N4O7/c29-13-21-23(31)24(32)22(30)12-26(21)10-4-2-1-3-9-25-19-8-7-16(11-20(19)28(33)34)27-17-5-6-18(27)15-35-14-17/h7-8,11,17-18,21-25,29-32H,1-6,9-10,12-15H2/t17-,18+,21-,22+,23-,24-/m1/s1" 
UPH InChIKey         InChI                1.06  QGCBQROIBSZCHP-OAOHXRHQSA-N                                                                                                                                                                                   
UPH SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCCCCCNc2ccc(cc2[N+]([O-])=O)N3[C@H]4CC[C@@H]3COC4"                                                                                                                    
UPH SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCCCCCNc2ccc(cc2[N+]([O-])=O)N3[CH]4CC[CH]3COC4"                                                                                                                              
UPH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2[C@@H]3CC[C@H]2COC3)[N+](=O)[O-])NCCCCCCN4C[C@@H]([C@H]([C@@H]([C@H]4CO)O)O)O"                                                                                                                   
UPH SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1N2C3CCC2COC3)[N+](=O)[O-])NCCCCCCN4CC(C(C(C4CO)O)O)O"                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UPH "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-(6-{2-nitro-4-[(1R,5S)-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]anilino}hexyl)piperidine-3,4,5-triol"                         
UPH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[6-[[2-nitro-4-[(1~{S},5~{R})-3-oxa-8-azabicyclo[3.2.1]octan-8-yl]phenyl]amino]hexyl]piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UPH "Create component" 2022-08-23 RCSB 
UPH "Initial release"  2023-02-22 RCSB 
# 
