data_PBH
# 
_chem_comp.id                                    PBH 
_chem_comp.name                                  "(11aS)-7-methoxy-8-(3-{4-[6-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]phenoxy}propoxy)-1,2,3,10,11,11a-hexahydro-5H-pyrrolo[2,1-c][1,4]benzodiazepin-5-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H40 N6 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-02-24 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        596.719 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PBH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2KTT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PBH C1   C1   C 0 1 N N N 20.899 22.866 54.256 9.066   3.937  1.730  C1   PBH 1  
PBH O2   O2   O 0 1 N N N 20.928 19.606 47.041 7.735   -3.102 0.286  O2   PBH 2  
PBH C3   C3   C 0 1 N N N 22.027 20.751 54.266 10.200  3.738  -0.385 C3   PBH 3  
PBH N4   N4   N 0 1 N N N 21.825 21.148 52.863 9.399   2.534  -0.216 N4   PBH 4  
PBH O4   O4   O 0 1 N N N 22.874 24.461 42.297 0.441   -3.062 0.305  O4   PBH 5  
PBH N5   N5   N 0 1 N N N 30.811 29.981 36.470 -10.088 1.268  -0.464 N5   PBH 6  
PBH O5   O5   O 0 1 N N N 21.894 19.089 51.992 10.271  1.111  -1.737 O5   PBH 7  
PBH N6   N6   N 0 1 N N N 33.158 31.594 36.766 -12.323 2.848  0.319  N6   PBH 8  
PBH C7   C7   C 0 1 Y N N 21.354 20.445 48.057 7.529   -1.792 -0.018 C7   PBH 9  
PBH C9   C9   C 0 1 Y N N 22.282 22.561 48.732 5.991   0.050  -0.373 C9   PBH 10 
PBH N10  N10  N 0 1 N N N 22.892 23.022 50.964 6.898   2.254  -0.719 N10  PBH 11 
PBH C11  C11  C 0 1 N N N 22.388 23.449 52.271 7.102   3.193  0.420  C11  PBH 12 
PBH C12  C12  C 0 1 N N N 19.918 18.591 47.242 9.092   -3.546 0.359  C12  PBH 13 
PBH C13  C13  C 0 1 N N N 22.412 23.299 45.890 3.869   -1.561 -0.029 C13  PBH 14 
PBH O13  O13  O 0 1 N N N 21.830 22.068 46.377 5.177   -2.129 0.072  O13  PBH 15 
PBH C14  C14  C 0 1 N N N 22.146 23.405 44.377 2.820   -2.651 0.200  C14  PBH 16 
PBH C15  C15  C 0 1 N N N 23.149 24.367 43.720 1.421   -2.043 0.091  C15  PBH 17 
PBH C17  C17  C 0 1 Y N N 23.681 25.199 41.444 -0.863  -2.686 0.242  C17  PBH 18 
PBH C18  C18  C 0 1 Y N N 23.311 25.345 40.108 -1.865  -3.627 0.440  C18  PBH 19 
PBH C19  C19  C 0 1 Y N N 24.872 25.778 41.879 -1.190  -1.361 -0.015 C19  PBH 20 
PBH C1A  C1A  C 0 1 N N S 21.306 22.516 52.810 8.521   2.696  0.979  C1A  PBH 21 
PBH C20  C20  C 0 1 Y N N 24.131 26.044 39.216 -3.189  -3.250 0.378  C20  PBH 22 
PBH C21  C21  C 0 1 Y N N 25.683 26.477 40.994 -2.512  -0.976 -0.079 C21  PBH 23 
PBH C22  C22  C 0 1 Y N N 25.336 26.614 39.649 -3.522  -1.920 0.114  C22  PBH 24 
PBH C23  C23  C 0 1 Y N N 26.214 27.352 38.758 -4.941  -1.512 0.045  C23  PBH 25 
PBH C24  C24  C 0 1 Y N N 27.965 28.352 38.084 -6.765  -0.275 -0.182 C24  PBH 26 
PBH C25  C25  C 0 1 Y N N 27.027 28.325 37.092 -7.118  -1.610 0.086  C25  PBH 27 
PBH C26  C26  C 0 1 Y N N 29.228 28.899 37.926 -7.754  0.679  -0.364 C26  PBH 28 
PBH C27  C27  C 0 1 Y N N 27.321 28.861 35.847 -8.470  -1.962 0.166  C27  PBH 29 
PBH C28  C28  C 0 1 Y N N 29.560 29.437 36.676 -9.087  0.310  -0.281 C28  PBH 30 
PBH C29  C29  C 0 1 Y N N 28.598 29.411 35.645 -9.434  -1.014 -0.015 C29  PBH 31 
PBH C2D  C2D  C 0 1 N N N 21.817 22.006 55.123 10.443  4.210  1.075  C2D  PBH 32 
PBH C30  C30  C 0 1 N N N 32.035 29.385 37.035 -11.423 0.668  -0.335 C30  PBH 33 
PBH N30  N30  N 0 1 Y N N 25.902 27.711 37.486 -5.965  -2.311 0.216  N30  PBH 34 
PBH C31  C31  C 0 1 N N N 31.032 31.105 35.547 -9.924  2.387  0.475  C31  PBH 35 
PBH C32  C32  C 0 1 N N N 32.853 30.484 37.741 -12.487 1.730  -0.620 C32  PBH 36 
PBH C33  C33  C 0 1 N N N 31.876 32.186 36.249 -10.988 3.449  0.190  C33  PBH 37 
PBH C34  C34  C 0 1 N N N 33.937 32.665 37.473 -13.375 3.856  0.126  C34  PBH 38 
PBH N40  N40  N 0 1 Y N N 27.464 27.762 39.161 -5.384  -0.238 -0.200 N40  PBH 39 
PBH C5A  C5A  C 0 1 Y N N 21.792 20.885 50.417 8.348   0.377  -0.542 C5A  PBH 40 
PBH C5D  C5D  C 0 1 N N N 21.844 20.298 51.811 9.427   1.355  -0.897 C5D  PBH 41 
PBH C6D  C6D  C 0 1 Y N N 21.364 20.033 49.388 8.608   -0.951 -0.241 C6D  PBH 42 
PBH C8D  C8D  C 0 1 Y N N 21.827 21.711 47.720 6.229   -1.289 -0.106 C8D  PBH 43 
PBH C9A  C9A  C 0 1 Y N N 22.263 22.173 50.077 7.075   0.907  -0.564 C9A  PBH 44 
PBH H1   H1   H 0 1 N N N 21.043 23.937 54.463 8.402   4.790  1.588  H1   PBH 45 
PBH H1A  H1A  H 0 1 N N N 19.840 22.631 54.440 9.185   3.718  2.791  H1A  PBH 46 
PBH H3   H3   H 0 1 N N N 21.305 19.971 54.549 11.145  3.506  -0.877 H3   PBH 47 
PBH H3A  H3A  H 0 1 N N N 23.044 20.358 54.408 9.648   4.492  -0.946 H3A  PBH 48 
PBH H9   H9   H 0 1 N N N 22.657 23.540 48.470 4.980   0.424  -0.433 H9   PBH 49 
PBH HN10 HN10 H 0 0 N N N 22.997 23.875 50.453 6.636   2.604  -1.584 HN10 PBH 50 
PBH H11  H11  H 0 1 N N N 23.227 23.459 52.983 7.156   4.225  0.073  H11  PBH 51 
PBH H11A H11A H 0 0 N N N 21.960 24.457 52.168 6.321   3.074  1.171  H11A PBH 52 
PBH H12  H12  H 0 1 N N N 19.746 18.053 46.298 9.618   -2.980 1.128  H12  PBH 53 
PBH H12A H12A H 0 0 N N N 20.259 17.882 48.011 9.114   -4.607 0.609  H12A PBH 54 
PBH H12B H12B H 0 0 N N N 18.981 19.066 47.570 9.577   -3.388 -0.604 H12B PBH 55 
PBH H13  H13  H 0 1 N N N 21.957 24.156 46.408 3.752   -0.781 0.723  H13  PBH 56 
PBH H13A H13A H 0 0 N N N 23.496 23.297 46.077 3.736   -1.132 -1.022 H13A PBH 57 
PBH H14  H14  H 0 1 N N N 22.251 22.409 43.922 2.937   -3.432 -0.552 H14  PBH 58 
PBH H14A H14A H 0 0 N N N 21.126 23.783 44.216 2.954   -3.081 1.193  H14A PBH 59 
PBH H15  H15  H 0 1 N N N 24.171 23.989 43.871 1.287   -1.614 -0.902 H15  PBH 60 
PBH H15A H15A H 0 0 N N N 23.054 25.363 44.177 1.304   -1.263 0.843  H15A PBH 61 
PBH H18  H18  H 0 1 N N N 22.384 24.915 39.759 -1.606  -4.656 0.644  H18  PBH 62 
PBH H19  H19  H 0 1 N N N 25.167 25.682 42.914 -0.408  -0.632 -0.165 H19  PBH 63 
PBH H1AA H1AA H 0 0 N N N 20.441 22.620 52.138 8.468   1.801  1.600  H1AA PBH 64 
PBH H20  H20  H 0 1 N N N 23.833 26.146 38.183 -3.967  -3.982 0.532  H20  PBH 65 
PBH H21  H21  H 0 1 N N N 26.599 26.923 41.353 -2.766  0.054  -0.279 H21  PBH 66 
PBH H26  H26  H 0 1 N N N 29.935 28.910 38.742 -7.488  1.706  -0.570 H26  PBH 67 
PBH H27  H27  H 0 1 N N N 26.588 28.856 35.054 -8.750  -2.985 0.371  H27  PBH 68 
PBH H29  H29  H 0 1 N N N 28.849 29.823 34.679 -10.476 -1.291 0.048  H29  PBH 69 
PBH H2D  H2D  H 0 1 N N N 22.768 22.515 55.337 10.687  5.272  1.107  H2D  PBH 70 
PBH H2DA H2DA H 0 0 N N N 21.353 21.764 56.091 11.225  3.618  1.551  H2DA PBH 71 
PBH H30  H30  H 0 1 N N N 31.764 28.604 37.760 -11.524 -0.150 -1.049 H30  PBH 72 
PBH H30A H30A H 0 0 N N N 32.635 28.940 36.227 -11.553 0.285  0.678  H30A PBH 73 
PBH H31  H31  H 0 1 N N N 31.564 30.747 34.653 -10.037 2.024  1.496  H31  PBH 74 
PBH H31A H31A H 0 0 N N N 30.063 31.532 35.250 -8.932  2.823  0.351  H31A PBH 75 
PBH H32  H32  H 0 1 N N N 33.795 30.056 38.114 -13.478 1.294  -0.496 H32  PBH 76 
PBH H32A H32A H 0 0 N N N 32.273 30.887 38.584 -12.374 2.093  -1.641 H32A PBH 77 
PBH H33  H33  H 0 1 N N N 31.304 32.601 37.092 -10.858 3.832  -0.823 H33  PBH 78 
PBH H33A H33A H 0 0 N N N 32.111 32.985 35.530 -10.887 4.267  0.903  H33A PBH 79 
PBH H34  H34  H 0 1 N N N 34.164 33.479 36.769 -14.350 3.399  0.294  H34  PBH 80 
PBH H34A H34A H 0 0 N N N 33.342 33.059 38.310 -13.229 4.672  0.834  H34A PBH 81 
PBH H34B H34B H 0 0 N N N 34.876 32.241 37.858 -13.325 4.243  -0.891 H34B PBH 82 
PBH HN40 HN40 H 0 0 N N N 27.894 27.643 40.056 -4.831  0.543  -0.357 HN40 PBH 83 
PBH H6D  H6D  H 0 1 N N N 21.034 19.034 49.633 9.621   -1.320 -0.182 H6D  PBH 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PBH C1  C1A  SING N N 1  
PBH C1  C2D  SING N N 2  
PBH O2  C7   SING N N 3  
PBH O2  C12  SING N N 4  
PBH C3  N4   SING N N 5  
PBH C3  C2D  SING N N 6  
PBH N4  C1A  SING N N 7  
PBH N4  C5D  SING N N 8  
PBH O4  C15  SING N N 9  
PBH O4  C17  SING N N 10 
PBH N5  C28  SING N N 11 
PBH N5  C30  SING N N 12 
PBH N5  C31  SING N N 13 
PBH O5  C5D  DOUB N N 14 
PBH N6  C32  SING N N 15 
PBH N6  C33  SING N N 16 
PBH N6  C34  SING N N 17 
PBH C7  C6D  DOUB Y N 18 
PBH C7  C8D  SING Y N 19 
PBH C9  C8D  DOUB Y N 20 
PBH C9  C9A  SING Y N 21 
PBH N10 C11  SING N N 22 
PBH N10 C9A  SING N N 23 
PBH C11 C1A  SING N N 24 
PBH C13 O13  SING N N 25 
PBH C13 C14  SING N N 26 
PBH O13 C8D  SING N N 27 
PBH C14 C15  SING N N 28 
PBH C17 C18  DOUB Y N 29 
PBH C17 C19  SING Y N 30 
PBH C18 C20  SING Y N 31 
PBH C19 C21  DOUB Y N 32 
PBH C20 C22  DOUB Y N 33 
PBH C21 C22  SING Y N 34 
PBH C22 C23  SING Y N 35 
PBH C23 N30  DOUB Y N 36 
PBH C23 N40  SING Y N 37 
PBH C24 C25  DOUB Y N 38 
PBH C24 C26  SING Y N 39 
PBH C24 N40  SING Y N 40 
PBH C25 C27  SING Y N 41 
PBH C25 N30  SING Y N 42 
PBH C26 C28  DOUB Y N 43 
PBH C27 C29  DOUB Y N 44 
PBH C28 C29  SING Y N 45 
PBH C30 C32  SING N N 46 
PBH C31 C33  SING N N 47 
PBH C5A C5D  SING N N 48 
PBH C5A C6D  SING Y N 49 
PBH C5A C9A  DOUB Y N 50 
PBH C1  H1   SING N N 51 
PBH C1  H1A  SING N N 52 
PBH C3  H3   SING N N 53 
PBH C3  H3A  SING N N 54 
PBH C9  H9   SING N N 55 
PBH N10 HN10 SING N N 56 
PBH C11 H11  SING N N 57 
PBH C11 H11A SING N N 58 
PBH C12 H12  SING N N 59 
PBH C12 H12A SING N N 60 
PBH C12 H12B SING N N 61 
PBH C13 H13  SING N N 62 
PBH C13 H13A SING N N 63 
PBH C14 H14  SING N N 64 
PBH C14 H14A SING N N 65 
PBH C15 H15  SING N N 66 
PBH C15 H15A SING N N 67 
PBH C18 H18  SING N N 68 
PBH C19 H19  SING N N 69 
PBH C1A H1AA SING N N 70 
PBH C20 H20  SING N N 71 
PBH C21 H21  SING N N 72 
PBH C26 H26  SING N N 73 
PBH C27 H27  SING N N 74 
PBH C29 H29  SING N N 75 
PBH C2D H2D  SING N N 76 
PBH C2D H2DA SING N N 77 
PBH C30 H30  SING N N 78 
PBH C30 H30A SING N N 79 
PBH C31 H31  SING N N 80 
PBH C31 H31A SING N N 81 
PBH C32 H32  SING N N 82 
PBH C32 H32A SING N N 83 
PBH C33 H33  SING N N 84 
PBH C33 H33A SING N N 85 
PBH C34 H34  SING N N 86 
PBH C34 H34A SING N N 87 
PBH C34 H34B SING N N 88 
PBH N40 HN40 SING N N 89 
PBH C6D H6D  SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PBH SMILES_CANONICAL CACTVS               3.352 "COc1cc2C(=O)N3CCC[C@H]3CNc2cc1OCCCOc4ccc(cc4)c5[nH]c6cc(ccc6n5)N7CCN(C)CC7" 
PBH SMILES           CACTVS               3.352 "COc1cc2C(=O)N3CCC[CH]3CNc2cc1OCCCOc4ccc(cc4)c5[nH]c6cc(ccc6n5)N7CCN(C)CC7" 
PBH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CN1CCN(CC1)c2ccc3c(c2)[nH]c(n3)c4ccc(cc4)OCCCOc5cc6c(cc5OC)C(=O)N7CCC[C@H]7CN6" 
PBH SMILES           "OpenEye OEToolkits" 1.7.0 "CN1CCN(CC1)c2ccc3c(c2)[nH]c(n3)c4ccc(cc4)OCCCOc5cc6c(cc5OC)C(=O)N7CCCC7CN6" 
PBH InChI            InChI                1.03  
"InChI=1S/C34H40N6O4/c1-38-13-15-39(16-14-38)24-8-11-28-30(19-24)37-33(36-28)23-6-9-26(10-7-23)43-17-4-18-44-32-21-29-27(20-31(32)42-2)34(41)40-12-3-5-25(40)22-35-29/h6-11,19-21,25,35H,3-5,12-18,22H2,1-2H3,(H,36,37)/t25-/m0/s1" 
PBH InChIKey         InChI                1.03  FHYBNKKZFOFFND-VWLOTQADSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PBH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(6aS)-2-methoxy-3-[3-[4-[6-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]phenoxy]propoxy]-5,6,6a,7,8,9-hexahydropyrrolo[2,1-c][1,4]benzodiazepin-11-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PBH "Create component"     2010-02-24 PDBJ 
PBH "Modify aromatic_flag" 2011-06-04 RCSB 
PBH "Modify descriptor"    2011-06-04 RCSB 
# 
