data_F6H
# 
_chem_comp.id                                    F6H 
_chem_comp.name                                  "3,7-anhydro-1,5,6-trideoxy-5-fluoro-6-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-2-O-phosphono-D-glycero-L-allo-heptitol" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H18 F N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-01-11 
_chem_comp.pdbx_modified_date                    2012-02-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        368.252 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F6H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3V07 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F6H P      P      P 0 1 N N N 10.658 4.542 3.028 -3.501 -0.981 -0.614 P      F6H 1  
F6H N1     N1     N 0 1 N N N 5.935  6.737 5.248 2.408  0.604  0.067  N1     F6H 2  
F6H C2     C2     C 0 1 N N N 5.009  6.931 6.191 3.017  0.407  -1.116 C2     F6H 3  
F6H O2     O2     O 0 1 N N N 4.186  7.877 6.232 3.027  1.301  -1.941 O2     F6H 4  
F6H N3     N3     N 0 1 N N N 4.936  6.010 7.219 3.616  -0.764 -1.400 N3     F6H 5  
F6H C4     C4     C 0 1 N N N 5.831  5.000 7.317 3.614  -1.765 -0.497 C4     F6H 6  
F6H O4     O4     O 0 1 N N N 5.696  4.217 8.343 4.156  -2.825 -0.752 O4     F6H 7  
F6H C5     C5     C 0 1 N N N 6.784  4.769 6.338 2.976  -1.572 0.752  C5     F6H 8  
F6H C6     C6     C 0 1 N N N 6.817  5.705 5.337 2.383  -0.387 1.011  C6     F6H 9  
F6H C7     C7     C 0 1 N N N 7.809  3.691 6.462 2.958  -2.674 1.780  C7     F6H 10 
F6H "C1'"  "C1'"  C 0 1 N N N 6.182  7.071 2.742 1.235  1.894  1.785  "C1'"  F6H 11 
F6H "C2'"  "C2'"  C 0 1 N N R 5.986  7.721 4.137 1.770  1.892  0.350  "C2'"  F6H 12 
F6H "C3'"  "C3'"  C 0 1 N N S 7.075  8.761 4.397 0.605  2.111  -0.621 "C3'"  F6H 13 
F6H "F3'"  "F3'"  F 0 1 N N N 6.840  9.818 3.549 0.038  3.369  -0.394 "F3'"  F6H 14 
F6H "C4'"  "C4'"  C 0 1 N N R 8.500  8.223 4.152 -0.448 1.022  -0.392 "C4'"  F6H 15 
F6H "O4'"  "O4'"  O 0 1 N N N 9.490  9.339 4.192 -1.572 1.259  -1.242 "O4'"  F6H 16 
F6H "C5'"  "C5'"  C 0 1 N N S 8.546  7.641 2.708 -0.897 1.058  1.072  "C5'"  F6H 17 
F6H "O5'"  "O5'"  O 0 1 N N N 7.511  6.654 2.587 0.238  0.879  1.921  "O5'"  F6H 18 
F6H "C6'"  "C6'"  C 0 1 N N R 9.863  6.956 2.338 -1.905 -0.065 1.323  "C6'"  F6H 19 
F6H "O6'"  "O6'"  O 0 1 N N N 10.033 5.946 3.355 -3.039 0.113  0.473  "O6'"  F6H 20 
F6H "C7'"  "C7'"  C 0 1 N N N 11.140 7.776 2.166 -2.354 -0.029 2.786  "C7'"  F6H 21 
F6H OP1    OP1    O 0 1 N N N 11.988 4.637 2.070 -4.727 -0.396 -1.478 OP1    F6H 22 
F6H OP2    OP2    O 0 1 N N N 10.726 3.777 4.387 -2.368 -1.291 -1.514 OP2    F6H 23 
F6H OP3    OP3    O 0 1 N Y N 9.687  3.812 1.982 -3.970 -2.323 0.142  OP3    F6H 24 
F6H HN3    HN3    H 0 1 N N N 4.210  6.091 7.902 4.051  -0.889 -2.258 HN3    F6H 25 
F6H H6     H6     H 0 1 N N N 7.583  5.619 4.580 1.892  -0.221 1.959  H6     F6H 26 
F6H H7     H7     H 0 1 N N N 8.455  3.694 5.572 3.484  -3.545 1.387  H7     F6H 27 
F6H H7A    H7A    H 0 1 N N N 8.420  3.868 7.359 3.451  -2.331 2.689  H7A    F6H 28 
F6H H7B    H7B    H 0 1 N N N 7.307  2.716 6.547 1.927  -2.945 2.005  H7B    F6H 29 
F6H "H1'"  "H1'"  H 0 1 N N N 5.938  7.806 1.961 2.053  1.696  2.478  "H1'"  F6H 30 
F6H "H1'A" "H1'A" H 0 0 N N N 5.515  6.201 2.649 0.797  2.867  2.008  "H1'A" F6H 31 
F6H "H2'"  "H2'"  H 0 1 N N N 5.024  8.253 4.113 2.499  2.693  0.232  "H2'"  F6H 32 
F6H "H3'"  "H3'"  H 0 1 N N N 7.004  9.084 5.446 0.970  2.055  -1.646 "H3'"  F6H 33 
F6H "H4'"  "H4'"  H 0 1 N N N 8.749  7.443 4.886 -0.018 0.047  -0.618 "H4'"  F6H 34 
F6H "HO4'" "HO4'" H 0 0 N Y N 10.362 8.995 4.040 -1.359 1.255  -2.185 "HO4'" F6H 35 
F6H "H5'"  "H5'"  H 0 1 N N N 8.365  8.462 1.999 -1.363 2.020  1.285  "H5'"  F6H 36 
F6H "H6'"  "H6'"  H 0 1 N N N 9.690  6.440 1.382 -1.438 -1.027 1.110  "H6'"  F6H 37 
F6H "H7'"  "H7'"  H 0 1 N N N 11.973 7.108 1.902 -1.488 -0.165 3.435  "H7'"  F6H 38 
F6H "H7'A" "H7'A" H 0 0 N N N 10.996 8.515 1.364 -2.820 0.933  2.999  "H7'A" F6H 39 
F6H "H7'B" "H7'B" H 0 0 N N N 11.371 8.296 3.107 -3.072 -0.829 2.965  "H7'B" F6H 40 
F6H HOP1   HOP1   H 0 0 N N N 12.710 4.178 2.483 -5.058 -1.003 -2.154 HOP1   F6H 41 
F6H HOP3   HOP3   H 0 0 N Y N 9.320  3.032 2.381 -4.710 -2.194 0.749  HOP3   F6H 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F6H OP3   P      SING N N 1  
F6H OP1   P      SING N N 2  
F6H P     "O6'"  SING N N 3  
F6H P     OP2    DOUB N N 4  
F6H "C2'" N1     SING N N 5  
F6H N1    C6     SING N N 6  
F6H N1    C2     SING N N 7  
F6H C2    O2     DOUB N N 8  
F6H C2    N3     SING N N 9  
F6H N3    C4     SING N N 10 
F6H N3    HN3    SING N N 11 
F6H C5    C4     SING N N 12 
F6H C4    O4     DOUB N N 13 
F6H C6    C5     DOUB N N 14 
F6H C5    C7     SING N N 15 
F6H C6    H6     SING N N 16 
F6H C7    H7     SING N N 17 
F6H C7    H7A    SING N N 18 
F6H C7    H7B    SING N N 19 
F6H "O5'" "C1'"  SING N N 20 
F6H "C1'" "C2'"  SING N N 21 
F6H "C1'" "H1'"  SING N N 22 
F6H "C1'" "H1'A" SING N N 23 
F6H "C2'" "C3'"  SING N N 24 
F6H "C2'" "H2'"  SING N N 25 
F6H "F3'" "C3'"  SING N N 26 
F6H "C4'" "C3'"  SING N N 27 
F6H "C3'" "H3'"  SING N N 28 
F6H "C5'" "C4'"  SING N N 29 
F6H "C4'" "O4'"  SING N N 30 
F6H "C4'" "H4'"  SING N N 31 
F6H "O4'" "HO4'" SING N N 32 
F6H "C6'" "C5'"  SING N N 33 
F6H "O5'" "C5'"  SING N N 34 
F6H "C5'" "H5'"  SING N N 35 
F6H "C7'" "C6'"  SING N N 36 
F6H "C6'" "O6'"  SING N N 37 
F6H "C6'" "H6'"  SING N N 38 
F6H "C7'" "H7'"  SING N N 39 
F6H "C7'" "H7'A" SING N N 40 
F6H "C7'" "H7'B" SING N N 41 
F6H OP1   HOP1   SING N N 42 
F6H OP3   HOP3   SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F6H SMILES           ACDLabs              12.01 "O=P(O)(O)OC(C2OCC(N1C(=O)NC(=O)C(=C1)C)C(F)C2O)C"                                                                                                                 
F6H InChI            InChI                1.03  "InChI=1S/C12H18FN2O8P/c1-5-3-15(12(18)14-11(5)17)7-4-22-10(9(16)8(7)13)6(2)23-24(19,20)21/h3,6-10,16H,4H2,1-2H3,(H,14,17,18)(H2,19,20,21)/t6-,7-,8+,9+,10-/m1/s1" 
F6H InChIKey         InChI                1.03  PKEVEDVMICJXCG-FHNUBNKASA-N                                                                                                                                        
F6H SMILES_CANONICAL CACTVS               3.370 "C[C@@H](O[P](O)(O)=O)[C@H]1OC[C@H]([C@H](F)[C@@H]1O)N2C=C(C)C(=O)NC2=O"                                                                                           
F6H SMILES           CACTVS               3.370 "C[CH](O[P](O)(O)=O)[CH]1OC[CH]([CH](F)[CH]1O)N2C=C(C)C(=O)NC2=O"                                                                                                  
F6H SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@@H]2CO[C@@H]([C@H]([C@H]2F)O)[C@@H](C)OP(=O)(O)O"                                                                                            
F6H SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2COC(C(C2F)O)C(C)OP(=O)(O)O"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F6H "SYSTEMATIC NAME" ACDLabs              12.01 "3,7-anhydro-1,5,6-trideoxy-5-fluoro-6-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-2-O-phosphono-D-glycero-L-allo-heptitol"      
F6H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1R)-1-[(2S,3R,4S,5R)-4-fluoranyl-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxan-2-yl]ethyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F6H "Create component" 2012-01-11 RCSB 
# 
