data_F5H
# 
_chem_comp.id                                    F5H 
_chem_comp.name                                  "3,7-anhydro-1,5,6-trideoxy-5-fluoro-6-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-2-O-phosphono-D-glycero-L-altro-heptitol" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C12 H18 F N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-01-11 
_chem_comp.pdbx_modified_date                    2012-02-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        368.252 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F5H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3V06 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F5H P      P      P 0 1 N N N -10.585 4.339 -5.964  2.649  -1.372 0.590  P      F5H 1  
F5H N1     N1     N 0 1 N N N -5.513  6.522 -7.806  -2.135 0.467  -0.242 N1     F5H 2  
F5H C2     C2     C 0 1 N N N -4.576  6.709 -8.767  -2.850 0.073  0.827  C2     F5H 3  
F5H O2     O2     O 0 1 N N N -3.813  7.661 -8.761  -3.204 0.897  1.648  O2     F5H 4  
F5H N3     N3     N 0 1 N N N -4.460  5.829 -9.758  -3.181 -1.220 1.000  N3     F5H 5  
F5H C4     C4     C 0 1 N N N -5.295  4.757 -9.835  -2.797 -2.146 0.098  C4     F5H 6  
F5H O4     O4     O 0 1 N N N -5.105  3.932 -10.884 -3.096 -3.316 0.254  O4     F5H 7  
F5H C5     C5     C 0 1 N N N -6.321  4.517 -8.881  -2.043 -1.745 -1.031 C5     F5H 8  
F5H C6     C6     C 0 1 N N N -6.371  5.444 -7.872  -1.730 -0.441 -1.183 C6     F5H 9  
F5H C7     C7     C 0 1 N N N -7.236  3.334 -8.947  -1.602 -2.760 -2.054 C7     F5H 10 
F5H "C1'"  "C1'"  C 0 1 N N N -5.804  6.976 -5.298  -1.056 2.081  -1.732 "C1'"  F5H 11 
F5H O1P    O1P    O 0 1 N N N -11.884 4.915 -5.450  1.970  -2.832 0.576  O1P    F5H 12 
F5H "C2'"  "C2'"  C 0 1 N N R -5.619  7.543 -6.745  -1.790 1.882  -0.403 "C2'"  F5H 13 
F5H O2P    O2P    O 0 1 N N N -10.511 3.656 -7.277  2.381  -0.716 1.888  O2P    F5H 14 
F5H "C3'"  "C3'"  C 0 1 N N S -6.787  8.502 -7.116  -0.877 2.320  0.746  "C3'"  F5H 15 
F5H "F3'"  "F3'"  F 0 1 N N N -6.630  9.597 -6.330  -0.600 3.687  0.628  "F3'"  F5H 16 
F5H O3P    O3P    O 0 1 N Y N -10.142 3.294 -4.831  4.239  -1.518 0.380  O3P    F5H 17 
F5H "C4'"  "C4'"  C 0 1 N N R -8.184  7.862 -6.886  0.429  1.524  0.679  "C4'"  F5H 18 
F5H "O4'"  "O4'"  O 0 1 N N N -9.213  8.878 -6.936  1.317  1.976  1.703  "O4'"  F5H 19 
F5H "C5'"  "C5'"  C 0 1 N N S -8.239  7.373 -5.447  1.078  1.737  -0.691 "C5'"  F5H 20 
F5H "O5'"  "O5'"  O 0 1 N N N -7.118  6.479 -5.201  0.165  1.338  -1.716 "O5'"  F5H 21 
F5H "C6'"  "C6'"  C 0 1 N N S -9.519  6.600 -5.113  2.353  0.897  -0.789 "C6'"  F5H 22 
F5H "O6'"  "O6'"  O 0 1 N N N -9.507  5.459 -5.999  2.030  -0.482 -0.600 "O6'"  F5H 23 
F5H "C7'"  "C7'"  C 0 1 N N N -9.654  6.295 -3.614  2.986  1.090  -2.168 "C7'"  F5H 24 
F5H HN3    HN3    H 0 1 N N N -3.752  5.956 -10.453 -3.697 -1.487 1.777  HN3    F5H 25 
F5H H6     H6     H 0 1 N N N -7.113  5.325 -7.096  -1.157 -0.116 -2.038 H6     F5H 26 
F5H H7     H7     H 0 1 N N N -7.941  3.368 -8.103  -1.953 -3.749 -1.759 H7     F5H 27 
F5H H7A    H7A    H 0 1 N N N -7.796  3.356 -9.894  -2.020 -2.501 -3.026 H7A    F5H 28 
F5H H7B    H7B    H 0 1 N N N -6.643  2.409 -8.893  -0.514 -2.764 -2.115 H7B    F5H 29 
F5H "H1'"  "H1'"  H 0 1 N N N -5.082  6.166 -5.117  -1.684 1.730  -2.550 "H1'"  F5H 30 
F5H "H1'A" "H1'A" H 0 0 N N N -5.650  7.776 -4.559  -0.836 3.139  -1.870 "H1'A" F5H 31 
F5H HO1P   HO1P   H 0 0 N N N -12.573 4.760 -6.086  2.296  -3.424 1.268  HO1P   F5H 32 
F5H "H2'"  "H2'"  H 0 1 N N N -4.694  8.138 -6.745  -2.700 2.481  -0.396 "H2'"  F5H 33 
F5H "H3'"  "H3'"  H 0 1 N N N -6.696  8.762 -8.181  -1.373 2.129  1.698  "H3'"  F5H 34 
F5H HO3P   HO3P   H 0 0 N Y N -9.926  2.461 -5.234  4.489  -1.941 -0.452 HO3P   F5H 35 
F5H "H4'"  "H4'"  H 0 1 N N N -8.364  7.042 -7.597  0.218  0.464  0.821  "H4'"  F5H 36 
F5H "HO4'" "HO4'" H 0 0 N Y N -10.062 8.476 -6.794  0.968  1.875  2.599  "HO4'" F5H 37 
F5H "H5'"  "H5'"  H 0 1 N N N -8.171  8.242 -4.777  1.326  2.791  -0.816 "H5'"  F5H 38 
F5H "H6'"  "H6'"  H 0 1 N N N -10.368 7.242 -5.390  3.056  1.214  -0.019 "H6'"  F5H 39 
F5H "H7'"  "H7'"  H 0 1 N N N -10.587 5.741 -3.435  3.232  2.142  -2.312 "H7'"  F5H 40 
F5H "H7'A" "H7'A" H 0 0 N N N -8.798  5.687 -3.285  3.895  0.491  -2.237 "H7'A" F5H 41 
F5H "H7'B" "H7'B" H 0 0 N N N -9.673  7.238 -3.048  2.283  0.773  -2.938 "H7'B" F5H 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F5H O2P   P      DOUB N N 1  
F5H "O6'" P      SING N N 2  
F5H P     O1P    SING N N 3  
F5H P     O3P    SING N N 4  
F5H C2    N1     SING N N 5  
F5H C6    N1     SING N N 6  
F5H N1    "C2'"  SING N N 7  
F5H N3    C2     SING N N 8  
F5H C2    O2     DOUB N N 9  
F5H C4    N3     SING N N 10 
F5H N3    HN3    SING N N 11 
F5H O4    C4     DOUB N N 12 
F5H C4    C5     SING N N 13 
F5H C7    C5     SING N N 14 
F5H C5    C6     DOUB N N 15 
F5H C6    H6     SING N N 16 
F5H C7    H7     SING N N 17 
F5H C7    H7A    SING N N 18 
F5H C7    H7B    SING N N 19 
F5H "C2'" "C1'"  SING N N 20 
F5H "C1'" "O5'"  SING N N 21 
F5H "C1'" "H1'"  SING N N 22 
F5H "C1'" "H1'A" SING N N 23 
F5H O1P   HO1P   SING N N 24 
F5H "C3'" "C2'"  SING N N 25 
F5H "C2'" "H2'"  SING N N 26 
F5H "C3'" "C4'"  SING N N 27 
F5H "C3'" "F3'"  SING N N 28 
F5H "C3'" "H3'"  SING N N 29 
F5H O3P   HO3P   SING N N 30 
F5H "O4'" "C4'"  SING N N 31 
F5H "C4'" "C5'"  SING N N 32 
F5H "C4'" "H4'"  SING N N 33 
F5H "O4'" "HO4'" SING N N 34 
F5H "C5'" "O5'"  SING N N 35 
F5H "C5'" "C6'"  SING N N 36 
F5H "C5'" "H5'"  SING N N 37 
F5H "O6'" "C6'"  SING N N 38 
F5H "C6'" "C7'"  SING N N 39 
F5H "C6'" "H6'"  SING N N 40 
F5H "C7'" "H7'"  SING N N 41 
F5H "C7'" "H7'A" SING N N 42 
F5H "C7'" "H7'B" SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F5H SMILES           ACDLabs              12.01 "O=P(O)(O)OC(C2OCC(N1C(=O)NC(=O)C(=C1)C)C(F)C2O)C"                                                                                                                 
F5H InChI            InChI                1.03  "InChI=1S/C12H18FN2O8P/c1-5-3-15(12(18)14-11(5)17)7-4-22-10(9(16)8(7)13)6(2)23-24(19,20)21/h3,6-10,16H,4H2,1-2H3,(H,14,17,18)(H2,19,20,21)/t6-,7+,8-,9-,10+/m0/s1" 
F5H InChIKey         InChI                1.03  PKEVEDVMICJXCG-CVPUBMOQSA-N                                                                                                                                        
F5H SMILES_CANONICAL CACTVS               3.370 "C[C@H](O[P](O)(O)=O)[C@H]1OC[C@H]([C@H](F)[C@@H]1O)N2C=C(C)C(=O)NC2=O"                                                                                            
F5H SMILES           CACTVS               3.370 "C[CH](O[P](O)(O)=O)[CH]1OC[CH]([CH](F)[CH]1O)N2C=C(C)C(=O)NC2=O"                                                                                                  
F5H SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@@H]2CO[C@@H]([C@H]([C@H]2F)O)[C@H](C)OP(=O)(O)O"                                                                                             
F5H SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2COC(C(C2F)O)C(C)OP(=O)(O)O"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F5H "SYSTEMATIC NAME" ACDLabs              12.01 "3,7-anhydro-1,5,6-trideoxy-5-fluoro-6-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-2-O-phosphono-D-glycero-L-altro-heptitol"     
F5H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1S)-1-[(2S,3R,4S,5R)-4-fluoranyl-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxan-2-yl]ethyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F5H "Create component" 2012-01-11 RCSB 
# 
