data_F4H
# 
_chem_comp.id                                    F4H 
_chem_comp.name                                  "1,5-anhydro-2,3-dideoxy-3-fluoro-2-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-6-O-phosphono-D-mannitol" 
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H16 F N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               DT 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-06-14 
_chem_comp.pdbx_modified_date                    2012-08-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        354.226 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F4H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3SD8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F4H P      P      P 0 1 N N N 10.588 5.143 3.172 4.434  0.529  0.114  P      F4H 1  
F4H N1     N1     N 0 1 N N N 5.570  6.729 5.263 -2.407 -0.259 0.517  N1     F4H 2  
F4H C2     C2     C 0 1 N N N 4.669  6.859 6.335 -3.728 -0.032 0.638  C2     F4H 3  
F4H O2     O2     O 0 1 N N N 3.674  7.777 6.268 -4.446 -0.902 1.091  O2     F4H 4  
F4H N3     N3     N 0 1 N N N 4.761  6.065 7.414 -4.266 1.144  0.263  N3     F4H 5  
F4H C4     C4     C 0 1 N N N 5.720  5.124 7.471 -3.483 2.119  -0.241 C4     F4H 6  
F4H O4     O4     O 0 1 N N N 5.806  4.372 8.601 -3.968 3.183  -0.580 O4     F4H 7  
F4H C5     C5     C 0 1 N N N 6.654  5.010 6.444 -2.091 1.894  -0.373 C5     F4H 8  
F4H C6     C6     C 0 1 N N N 6.566  5.839 5.329 -1.579 0.705  0.010  C6     F4H 9  
F4H "C1'"  "C1'"  C 0 1 N N N 5.643  7.092 2.770 -0.689 -1.309 1.908  "C1'"  F4H 10 
F4H "C2'"  "C2'"  C 0 1 N N R 5.424  7.676 4.146 -1.850 -1.546 0.939  "C2'"  F4H 11 
F4H "C3'"  "C3'"  C 0 1 N N R 6.369  8.845 4.351 -1.335 -2.307 -0.286 "C3'"  F4H 12 
F4H "F3'"  "F3'"  F 0 1 N N N 6.204  9.375 5.625 -2.374 -2.465 -1.210 "F3'"  F4H 13 
F4H "C4'"  "C4'"  C 0 1 N N R 7.819  8.453 4.033 -0.196 -1.508 -0.928 "C4'"  F4H 14 
F4H "O4'"  "O4'"  O 0 1 N N N 8.663  9.608 4.092 0.341  -2.242 -2.029 "O4'"  F4H 15 
F4H "C5'"  "C5'"  C 0 1 N N R 7.920  7.843 2.631 0.901  -1.272 0.114  "C5'"  F4H 16 
F4H "O5'"  "O5'"  O 0 1 N N N 7.014  6.748 2.566 0.348  -0.588 1.240  "O5'"  F4H 17 
F4H C5M    C5M    C 0 1 N N N 7.740  3.986 6.515 -1.194 2.967  -0.934 C5M    F4H 18 
F4H "C6'"  "C6'"  C 0 1 N N N 9.314  7.279 2.365 2.015  -0.423 -0.502 "C6'"  F4H 19 
F4H "O6'"  "O6'"  O 0 1 N N N 9.607  6.353 3.406 3.091  -0.300 0.430  "O6'"  F4H 20 
F4H HN3    HN3    H 0 1 N N N 4.119  6.173 8.173 -5.220 1.290  0.356  HN3    F4H 21 
F4H H6     H6     H 0 1 N N N 7.290  5.765 4.531 -0.519 0.515  -0.083 H6     F4H 22 
F4H "H1'"  "H1'"  H 0 1 N N N 5.029  6.185 2.666 -1.042 -0.730 2.763  "H1'"  F4H 23 
F4H "H1'A" "H1'A" H 0 0 N N N 5.347  7.836 2.016 -0.302 -2.267 2.253  "H1'A" F4H 24 
F4H "H2'"  "H2'"  H 0 1 N N N 4.370  7.991 4.166 -2.624 -2.133 1.434  "H2'"  F4H 25 
F4H "H3'"  "H3'"  H 0 1 N N N 6.117  9.644 3.638 -0.967 -3.286 0.020  "H3'"  F4H 26 
F4H "H4'"  "H4'"  H 0 1 N N N 8.142  7.711 4.778 -0.577 -0.549 -1.280 "H4'"  F4H 27 
F4H "HO4'" "HO4'" H 0 0 N Y N 9.558  9.357 3.894 -0.301 -2.432 -2.727 "HO4'" F4H 28 
F4H "H5'"  "H5'"  H 0 1 N N N 7.697  8.629 1.894 1.309  -2.230 0.435  "H5'"  F4H 29 
F4H H5M    H5M    H 0 1 N N N 8.369  4.055 5.616 -1.790 3.845  -1.184 H5M    F4H 30 
F4H H5MA   H5MA   H 0 0 N N N 8.356  4.167 7.408 -0.442 3.236  -0.193 H5MA   F4H 31 
F4H H5MB   H5MB   H 0 0 N N N 7.294  2.982 6.574 -0.701 2.595  -1.833 H5MB   F4H 32 
F4H "H6'"  "H6'"  H 0 1 N N N 9.337  6.772 1.389 2.375  -0.901 -1.412 "H6'"  F4H 33 
F4H "H6'A" "H6'A" H 0 0 N N N 10.056 8.091 2.360 1.627  0.567  -0.742 "H6'A" F4H 34 
F4H O1P    O1P    O 0 1 N N N 11.071 4.548 4.613 5.476  0.345  1.328  O1P    F4H 35 
F4H O2P    O2P    O 0 1 N N N 9.827  3.986 2.339 5.042  0.026  -1.138 O2P    F4H 36 
F4H O3P    O3P    O 0 1 N Y N 11.960 5.681 2.285 4.075  2.090  -0.053 O3P    F4H 37 
F4H H15    H15    H 0 1 N N N 10.811 3.637 4.683 6.310  0.819  1.205  H15    F4H 38 
F4H H16    H16    H 0 1 N Y N 12.018 5.199 1.468 3.672  2.487  0.731  H16    F4H 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F4H P     "O6'"  SING N N 1  
F4H N1    C2     SING N N 2  
F4H N1    C6     SING N N 3  
F4H N1    "C2'"  SING N N 4  
F4H C2    O2     DOUB N N 5  
F4H C2    N3     SING N N 6  
F4H N3    C4     SING N N 7  
F4H N3    HN3    SING N N 8  
F4H C4    O4     DOUB N N 9  
F4H C4    C5     SING N N 10 
F4H C5    C6     DOUB N N 11 
F4H C5    C5M    SING N N 12 
F4H C6    H6     SING N N 13 
F4H "C1'" "C2'"  SING N N 14 
F4H "C1'" "O5'"  SING N N 15 
F4H "C1'" "H1'"  SING N N 16 
F4H "C1'" "H1'A" SING N N 17 
F4H "C2'" "C3'"  SING N N 18 
F4H "C2'" "H2'"  SING N N 19 
F4H "C3'" "F3'"  SING N N 20 
F4H "C3'" "C4'"  SING N N 21 
F4H "C3'" "H3'"  SING N N 22 
F4H "C4'" "O4'"  SING N N 23 
F4H "C4'" "C5'"  SING N N 24 
F4H "C4'" "H4'"  SING N N 25 
F4H "O4'" "HO4'" SING N N 26 
F4H "C5'" "O5'"  SING N N 27 
F4H "C5'" "C6'"  SING N N 28 
F4H "C5'" "H5'"  SING N N 29 
F4H C5M   H5M    SING N N 30 
F4H C5M   H5MA   SING N N 31 
F4H C5M   H5MB   SING N N 32 
F4H "C6'" "O6'"  SING N N 33 
F4H "C6'" "H6'"  SING N N 34 
F4H "C6'" "H6'A" SING N N 35 
F4H P     O1P    SING N N 36 
F4H P     O2P    DOUB N N 37 
F4H P     O3P    SING N N 38 
F4H O1P   H15    SING N N 39 
F4H O3P   H16    SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F4H SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OCC(N1C(=O)NC(=O)C(=C1)C)C(F)C2O"                                                                                                            
F4H InChI            InChI                1.03  "InChI=1S/C11H16FN2O8P/c1-5-2-14(11(17)13-10(5)16)6-3-21-7(9(15)8(6)12)4-22-23(18,19)20/h2,6-9,15H,3-4H2,1H3,(H,13,16,17)(H2,18,19,20)/t6-,7-,8-,9-/m1/s1" 
F4H InChIKey         InChI                1.03  RHZOVKWYBYFNDA-FNCVBFRFSA-N                                                                                                                                
F4H SMILES_CANONICAL CACTVS               3.370 "CC1=CN([C@@H]2CO[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2F)C(=O)NC1=O"                                                                                         
F4H SMILES           CACTVS               3.370 "CC1=CN([CH]2CO[CH](CO[P](O)(O)=O)[CH](O)[CH]2F)C(=O)NC1=O"                                                                                                
F4H SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC1=CN(C(=O)NC1=O)[C@@H]2CO[C@@H]([C@H]([C@@H]2F)O)COP(=O)(O)O"                                                                                           
F4H SMILES           "OpenEye OEToolkits" 1.7.2 "CC1=CN(C(=O)NC1=O)C2COC(C(C2F)O)COP(=O)(O)O"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F4H "SYSTEMATIC NAME" ACDLabs              12.01 "1,5-anhydro-2,3-dideoxy-3-fluoro-2-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-6-O-phosphono-D-mannitol"                
F4H "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3R,4R,5R)-4-fluoranyl-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F4H "Create component" 2011-06-14 RCSB 
F4H "Initial release"  2012-08-24 RCSB 
# 
