data_CPH
#

_chem_comp.id                                   CPH
_chem_comp.name                                 "(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H24 O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        None
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2021-05-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       420.410
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    CPH
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4LAI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CPH  C1      C1      C  0  1  N  N  N  -0.792  17.340  62.783  -0.255   2.327  -0.143  C1      CPH   1  
CPH  O1      O1      O  0  1  N  N  N  -0.739  16.239  62.220  -0.055   3.140   0.735  O1      CPH   2  
CPH  C2      C2      C  0  1  N  N  S   0.107  17.476  63.975  -1.476   2.421  -1.034  C2      CPH   3  
CPH  C3      C3      C  0  1  N  N  R   0.733  18.837  64.034  -2.040   1.003  -1.191  C3      CPH   4  
CPH  C4      C4      C  0  1  N  N  N  -0.342  19.935  64.043  -1.022   0.132  -1.923  C4      CPH   5  
CPH  C5      C5      C  0  1  Y  N  N  -3.926  21.855  61.284   3.330  -1.955  -1.039  C5      CPH   6  
CPH  C6      C6      C  0  1  Y  N  N  -4.970  21.717  60.438   4.564  -1.955  -0.422  C6      CPH   7  
CPH  C7      C7      C  0  1  Y  N  N  -5.387  20.493  59.864   4.942  -0.908   0.420  C7      CPH   8  
CPH  C8      C8      C  0  1  Y  N  N  -4.617  19.356  60.187   4.095   0.157   0.645  C8      CPH   9  
CPH  O8      O8      O  0  1  N  N  N  -4.929  18.198  59.628   4.475   1.169   1.466  O8      CPH  10  
CPH  C9      C9      C  0  1  Y  N  N  -2.630  18.339  61.370   1.931   1.237   0.249  C9      CPH  11  
CPH  O9      O9      O  0  1  N  N  N  -2.900  17.185  60.732   2.271   2.260   1.067  O9      CPH  12  
CPH  "C1'"   "C1'"   C  0  1  N  N  S   1.711  19.035  65.254  -2.320   0.409   0.191  "C1'"   CPH  13  
CPH  "O1'"   "O1'"   O  0  1  N  N  N   0.860  19.066  66.407  -1.087   0.228   0.890  "O1'"   CPH  14  
CPH  C10     C10     C  0  1  Y  N  N  -2.119  20.851  62.586   1.176  -0.874  -1.442  C10     CPH  15  
CPH  "C2'"   "C2'"   C  0  1  N  N  N   2.533  20.225  65.108  -3.009  -0.922   0.035  "C2'"   CPH  16  
CPH  "O2'"   "O2'"   O  0  1  N  N  N   3.178  20.410  64.089  -2.399  -1.945   0.234  "O2'"   CPH  17  
CPH  "C3'"   "C3'"   C  0  1  N  N  S   2.621  21.255  66.248  -4.460  -0.976  -0.369  "C3'"   CPH  18  
CPH  "O3'"   "O3'"   O  0  1  N  N  N   3.861  22.006  66.088  -4.793  -2.306  -0.773  "O3'"   CPH  19  
CPH  "C4'"   "C4'"   C  0  1  N  N  R   1.386  22.116  66.348  -5.336  -0.570   0.818  "C4'"   CPH  20  
CPH  "O4'"   "O4'"   O  0  1  N  N  N   1.283  22.802  65.053  -5.026  -1.396   1.943  "O4'"   CPH  21  
CPH  C4A     C4A     C  0  1  Y  N  N  -1.399  19.758  62.984   0.315   0.156  -1.230  C4A     CPH  22  
CPH  "C5'"   "C5'"   C  0  1  N  N  N   1.544  23.021  67.509  -6.810  -0.744   0.448  "C5'"   CPH  23  
CPH  C5A     C5A     C  0  1  Y  N  N  -3.172  20.767  61.667   2.440  -0.894  -0.821  C5A     CPH  24  
CPH  C8A     C8A     C  0  1  Y  N  N  -3.442  19.450  61.061   2.828   0.178   0.026  C8A     CPH  25  
CPH  C9A     C9A     C  0  1  Y  N  N  -1.608  18.449  62.325   0.683   1.222  -0.382  C9A     CPH  26  
CPH  CC7     CC7     C  0  1  N  N  N  -6.587  20.381  58.985   6.296  -0.933   1.082  CC7     CPH  27  
CPH  O6      O6      O  0  1  N  N  N  -5.792  22.785  60.074   5.421  -2.985  -0.637  O6      CPH  28  
CPH  O2      O2      O  0  1  N  N  N   1.134  16.516  63.981  -1.105   2.941  -2.312  O2      CPH  29  
CPH  CME     CME     C  0  1  N  N  N   1.338  18.177  67.501  -1.202   0.341   2.310  CME     CPH  30  
CPH  H2      H2      H  0  1  N  N  N  -0.509  17.349  64.878  -2.221   3.069  -0.573  H2      CPH  31  
CPH  H3      H3      H  0  1  N  N  N   1.331  18.971  63.120  -2.965   1.041  -1.765  H3      CPH  32  
CPH  H4      H4      H  0  1  N  N  N  -0.833  19.932  65.027  -1.389  -0.894  -1.956  H4      CPH  33  
CPH  H4A     H4A     H  0  1  N  N  N   0.151  20.905  63.882  -0.902   0.502  -2.941  H4A     CPH  34  
CPH  H5      H5      H  0  1  N  N  N  -3.678  22.834  61.667   3.051  -2.771  -1.689  H5      CPH  35  
CPH  HO8     HO8     H  0  1  N  N  N  -4.331  17.526  59.935   4.938   1.888   1.015  HO8     CPH  36  
CPH  HO9     HO9     H  0  1  N  N  N  -2.286  16.516  61.013   2.027   2.122   1.992  HO9     CPH  37  
CPH  "H1'"   "H1'"   H  0  1  N  N  N   2.363  18.150  65.304  -2.961   1.087   0.754  "H1'"   CPH  38  
CPH  H10     H10     H  0  1  N  N  N  -1.865  21.817  62.997   0.887  -1.686  -2.093  H10     CPH  39  
CPH  "H3'"   "H3'"   H  0  1  N  N  N   2.694  20.685  67.186  -4.632  -0.290  -1.198  "H3'"   CPH  40  
CPH  "HO3'"  "HO3'"  H  0  0  N  N  N   4.253  21.796  65.248  -4.664  -2.971  -0.083  "HO3'"  CPH  41  
CPH  "H4'"   "H4'"   H  0  1  N  N  N   0.507  21.472  66.499  -5.145   0.473   1.070  "H4'"   CPH  42  
CPH  "HO4'"  "HO4'"  H  0  0  N  N  N   0.518  23.365  65.052  -5.172  -2.339   1.790  "HO4'"  CPH  43  
CPH  "H5'"   "H5'"   H  0  1  N  N  N   0.653  23.659  67.601  -7.000  -1.788   0.196  "H5'"   CPH  44  
CPH  "H5'A"  "H5'A"  H  0  0  N  N  N   1.664  22.424  68.425  -7.434  -0.455   1.294  "H5'A"  CPH  45  
CPH  "H5'B"  "H5'B"  H  0  0  N  N  N   2.433  23.652  67.364  -7.046  -0.115  -0.410  "H5'B"  CPH  46  
CPH  HC7     HC7     H  0  1  N  N  N  -6.289  20.530  57.937   7.023  -0.438   0.439  HC7     CPH  47  
CPH  HC7A    HC7A    H  0  0  N  N  N  -7.034  19.383  59.101   6.243  -0.414   2.038  HC7A    CPH  48  
CPH  HC7B    HC7B    H  0  0  N  N  N  -7.323  21.147  59.270   6.600  -1.967   1.246  HC7B    CPH  49  
CPH  HO6     HO6     H  0  1  N  N  N  -6.463  22.479  59.475   6.015  -2.853  -1.390  HO6     CPH  50  
CPH  HO2     HO2     H  0  1  N  N  N   0.973  15.876  63.298  -0.712   3.824  -2.279  HO2     CPH  51  
CPH  HME     HME     H  0  1  N  N  N   0.648  18.242  68.355  -0.224   0.191   2.767  HME     CPH  52  
CPH  HMEA    HMEA    H  0  0  N  N  N   1.376  17.139  67.139  -1.574   1.332   2.567  HMEA    CPH  53  
CPH  HMEB    HMEB    H  0  0  N  N  N   2.343  18.492  67.817  -1.895  -0.415   2.680  HMEB    CPH  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CPH  O1     C1      DOUB  N  N   1  
CPH  C9A    C1      SING  N  N   2  
CPH  C1     C2      SING  N  N   3  
CPH  C2     O2      SING  N  N   4  
CPH  C2     C3      SING  N  N   5  
CPH  C2     H2      SING  N  N   6  
CPH  C3     C4      SING  N  N   7  
CPH  C3     "C1'"   SING  N  N   8  
CPH  C3     H3      SING  N  N   9  
CPH  C4A    C4      SING  N  N  10  
CPH  C4     H4      SING  N  N  11  
CPH  C4     H4A     SING  N  N  12  
CPH  C6     C5      DOUB  Y  N  13  
CPH  C5     C5A     SING  Y  N  14  
CPH  C5     H5      SING  N  N  15  
CPH  C7     C6      SING  Y  N  16  
CPH  O6     C6      SING  N  N  17  
CPH  CC7    C7      SING  N  N  18  
CPH  C7     C8      DOUB  Y  N  19  
CPH  O8     C8      SING  N  N  20  
CPH  C8     C8A     SING  Y  N  21  
CPH  O8     HO8     SING  N  N  22  
CPH  O9     C9      SING  N  N  23  
CPH  C8A    C9      DOUB  Y  N  24  
CPH  C9     C9A     SING  Y  N  25  
CPH  O9     HO9     SING  N  N  26  
CPH  "C2'"  "C1'"   SING  N  N  27  
CPH  "C1'"  "O1'"   SING  N  N  28  
CPH  "C1'"  "H1'"   SING  N  N  29  
CPH  "O1'"  CME     SING  N  N  30  
CPH  C5A    C10     DOUB  Y  N  31  
CPH  C10    C4A     SING  Y  N  32  
CPH  C10    H10     SING  N  N  33  
CPH  "O2'"  "C2'"   DOUB  N  N  34  
CPH  "C2'"  "C3'"   SING  N  N  35  
CPH  "O3'"  "C3'"   SING  N  N  36  
CPH  "C3'"  "C4'"   SING  N  N  37  
CPH  "C3'"  "H3'"   SING  N  N  38  
CPH  "O3'"  "HO3'"  SING  N  N  39  
CPH  "O4'"  "C4'"   SING  N  N  40  
CPH  "C4'"  "C5'"   SING  N  N  41  
CPH  "C4'"  "H4'"   SING  N  N  42  
CPH  "O4'"  "HO4'"  SING  N  N  43  
CPH  C9A    C4A     DOUB  Y  N  44  
CPH  "C5'"  "H5'"   SING  N  N  45  
CPH  "C5'"  "H5'A"  SING  N  N  46  
CPH  "C5'"  "H5'B"  SING  N  N  47  
CPH  C8A    C5A     SING  Y  N  48  
CPH  CC7    HC7     SING  N  N  49  
CPH  CC7    HC7A    SING  N  N  50  
CPH  CC7    HC7B    SING  N  N  51  
CPH  O6     HO6     SING  N  N  52  
CPH  O2     HO2     SING  N  N  53  
CPH  CME    HME     SING  N  N  54  
CPH  CME    HMEA    SING  N  N  55  
CPH  CME    HMEB    SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CPH  SMILES            ACDLabs               12.01  "CC(O)C(O)C(=O)C(OC)C1Cc2cc3cc(O)c(C)c(O)c3c(O)c2C(=O)C1O"  
CPH  InChI             InChI                 1.03   "InChI=1S/C21H24O9/c1-7-12(23)6-10-4-9-5-11(21(30-3)20(29)16(25)8(2)22)17(26)19(28)14(9)18(27)13(10)15(7)24/h4,6,8,11,16-17,21-27H,5H2,1-3H3/t8-,11-,16+,17+,21+/m1/s1"  
CPH  InChIKey          InChI                 1.03   AOCJXLJIUYHXRS-PKRZCTMMSA-N  
CPH  SMILES_CANONICAL  CACTVS                3.385  "CO[C@@H]([C@@H]1Cc2cc3cc(O)c(C)c(O)c3c(O)c2C(=O)[C@H]1O)C(=O)[C@@H](O)[C@@H](C)O"  
CPH  SMILES            CACTVS                3.385  "CO[CH]([CH]1Cc2cc3cc(O)c(C)c(O)c3c(O)c2C(=O)[CH]1O)C(=O)[CH](O)[CH](C)O"  
CPH  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(cc2cc3c(c(c2c1O)O)C(=O)[C@H]([C@@H](C3)[C@@H](C(=O)[C@H]([C@@H](C)O)O)OC)O)O"  
CPH  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(cc2cc3c(c(c2c1O)O)C(=O)C(C(C3)C(C(=O)C(C(C)O)O)OC)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CPH  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose"  
CPH  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S},3~{R})-3-[(1~{S},3~{S},4~{R})-1-methoxy-3,4-bis(oxidanyl)-2-oxidanylidene-pentyl]-7-methyl-2,6,8,9-tetrakis(oxidanyl)-3,4-dihydro-2~{H}-anthracen-1-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CPH  "Create component"    1999-07-08  RCSB  
CPH  "Modify descriptor"   2011-06-04  RCSB  
CPH  "Other modification"  2013-07-25  RCSB  
CPH  "Modify synonyms"     2021-03-01  PDBE  
CPH  "Modify synonyms"     2021-05-11  RCSB  
##
