data_CH
# 
_chem_comp.id                                    CH 
_chem_comp.name                                  
;N3-PROTONATED CYTIDINE-5'-MONOPHOSPHATE
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H15 N3 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               C 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        324.204 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     CH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        1KOS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
CH OP3    O3P  O 0 1 N Y N -7.677 -3.826 -4.414  -4.977 0.089  -0.423 OP3    CH 1  
CH P      P    P 0 1 N N N -7.437 -2.235 -4.522  -4.091 -0.990 0.070  P      CH 2  
CH OP1    O1P  O 0 1 N N N -8.014 -1.611 -3.313  -3.632 -1.914 -1.165 OP1    CH 3  
CH OP2    O2P  O 0 1 N N N -6.008 -2.013 -4.810  -4.886 -1.887 1.145  OP2    CH 4  
CH "O5'"  O5*  O 0 1 N N N -8.345 -1.800 -5.813  -2.793 -0.341 0.768  "O5'"  CH 5  
CH "C5'"  C5*  C 0 1 N N N -8.537 -2.595 -7.009  -2.200 0.532  -0.195 "C5'"  CH 6  
CH "C4'"  C4*  C 0 1 N N R -7.342 -2.521 -7.948  -0.954 1.184  0.407  "C4'"  CH 7  
CH "O4'"  O4*  O 0 1 N N N -6.203 -2.857 -7.171  0.068  0.192  0.645  "O4'"  CH 8  
CH "C3'"  C3*  C 0 1 N N S -7.339 -3.495 -9.133  -0.320 2.169  -0.600 "C3'"  CH 9  
CH "O3'"  O3*  O 0 1 N N N -6.465 -3.009 -10.168 -0.722 3.510  -0.310 "O3'"  CH 10 
CH "C2'"  C2*  C 0 1 N N R -6.769 -4.723 -8.425  1.203  2.001  -0.383 "C2'"  CH 11 
CH "O2'"  O2*  O 0 1 N N N -6.281 -5.760 -9.271  1.787  3.234  0.045  "O2'"  CH 12 
CH "C1'"  C1*  C 0 1 N N R -5.641 -4.069 -7.620  1.306  0.932  0.727  "C1'"  CH 13 
CH N1     N1   N 1 1 N N N -5.100 -4.838 -6.463  2.446  0.047  0.478  N1     CH 14 
CH C2     C2   C 0 1 N N N -3.751 -4.636 -6.154  2.506  -0.637 -0.663 C2     CH 15 
CH O2     O2   O 0 1 N N N -3.019 -3.875 -6.788  1.610  -0.516 -1.481 O2     CH 16 
CH N3     N3   N 0 1 N N N -3.267 -5.348 -5.075  3.540  -1.456 -0.932 N3     CH 17 
CH C4     C4   C 0 1 N N N -4.038 -6.208 -4.333  4.547  -1.605 -0.021 C4     CH 18 
CH N4     N4   N 0 1 N N N -3.470 -6.838 -3.305  5.603  -2.439 -0.279 N4     CH 19 
CH C5     C5   C 0 1 N N N -5.411 -6.400 -4.669  4.484  -0.892 1.167  C5     CH 20 
CH C6     C6   C 0 1 N N N -5.894 -5.704 -5.726  3.398  -0.057 1.390  C6     CH 21 
CH HOP3   3HOP H 0 0 N N N -7.306 -4.227 -5.191  ?      ?      ?      HOP3   CH 22 
CH HOP2   2HOP H 0 0 N N N -5.866 -1.075 -4.873  -5.654 -2.255 0.688  HOP2   CH 23 
CH "H5'"  1H5* H 0 1 N N N -9.436 -2.272 -7.536  -2.915 1.305  -0.475 "H5'"  CH 24 
CH "H5''" 2H5* H 0 0 N N N -8.675 -3.630 -6.696  -1.919 -0.040 -1.080 "H5''" CH 25 
CH "H4'"  H4*  H 0 1 N N N -7.243 -1.501 -8.317  -1.206 1.699  1.334  "H4'"  CH 26 
CH "H3'"  H3*  H 0 1 N N N -8.346 -3.631 -9.531  -0.593 1.902  -1.620 "H3'"  CH 27 
CH "HO3'" H3T  H 0 0 N Y N -6.463 -3.612 -10.901 -0.298 4.077  -0.968 "HO3'" CH 28 
CH "H2'"  H2*  H 0 1 N N N -7.553 -5.116 -7.780  1.682  1.649  -1.296 "H2'"  CH 29 
CH "HO2'" 2HO* H 0 0 N N N -6.053 -6.490 -8.689  1.637  3.875  -0.663 "HO2'" CH 30 
CH "H1'"  H1*  H 0 1 N N N -4.844 -3.677 -8.250  1.400  1.406  1.704  "H1'"  CH 31 
CH HN3    HN3  H 0 1 N N N -2.294 -5.211 -4.840  3.566  -1.946 -1.769 HN3    CH 32 
CH H41    1H4  H 0 1 N N N -2.495 -6.682 -3.095  6.316  -2.534 0.372  H41    CH 33 
CH H42    2H4  H 0 1 N N N -4.015 -7.470 -2.737  5.637  -2.936 -1.111 H42    CH 34 
CH H5     H5   H 0 1 N N N -6.031 -7.088 -4.091  5.266  -0.985 1.906  H5     CH 35 
CH H6     H6   H 0 1 N N N -6.951 -5.842 -5.981  3.329  0.506  2.309  H6     CH 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
CH OP3   P      SING N N 1  
CH OP3   HOP3   SING N N 2  
CH P     OP1    DOUB N N 3  
CH P     OP2    SING N N 4  
CH P     "O5'"  SING N N 5  
CH OP2   HOP2   SING N N 6  
CH "O5'" "C5'"  SING N N 7  
CH "C5'" "C4'"  SING N N 8  
CH "C5'" "H5'"  SING N N 9  
CH "C5'" "H5''" SING N N 10 
CH "C4'" "O4'"  SING N N 11 
CH "C4'" "C3'"  SING N N 12 
CH "C4'" "H4'"  SING N N 13 
CH "O4'" "C1'"  SING N N 14 
CH "C3'" "O3'"  SING N N 15 
CH "C3'" "C2'"  SING N N 16 
CH "C3'" "H3'"  SING N N 17 
CH "O3'" "HO3'" SING N N 18 
CH "C2'" "O2'"  SING N N 19 
CH "C2'" "C1'"  SING N N 20 
CH "C2'" "H2'"  SING N N 21 
CH "O2'" "HO2'" SING N N 22 
CH "C1'" N1     SING N N 23 
CH "C1'" "H1'"  SING N N 24 
CH N1    C2     SING N N 25 
CH N1    C6     DOUB N N 26 
CH C2    O2     DOUB N N 27 
CH C2    N3     SING N N 28 
CH N3    C4     SING N N 29 
CH N3    HN3    SING N N 30 
CH C4    N4     SING N N 31 
CH C4    C5     DOUB N N 32 
CH N4    H41    SING N N 33 
CH N4    H42    SING N N 34 
CH C5    C6     SING N N 35 
CH C5    H5     SING N N 36 
CH C6    H6     SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
CH SMILES           ACDLabs              10.04 "O=C1NC(N)=CC=[N+]1C2OC(C(O)C2O)COP(=O)(O)O"                                                                                                         
CH SMILES_CANONICAL CACTVS               3.341 "NC1=CC=[N+]([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)N1"                                                                                   
CH SMILES           CACTVS               3.341 "NC1=CC=[N+]([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)N1"                                                                                         
CH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(NC(=O)[N+](=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N"                                                                                 
CH SMILES           "OpenEye OEToolkits" 1.5.0 "C1=C(NC(=O)[N+](=C1)C2C(C(C(O2)COP(=O)(O)O)O)O)N"                                                                                                   
CH InChI            InChI                1.03  "InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H4,10,11,15,16,17,18)/p+1/t4-,6-,7-,8-/m1/s1" 
CH InChIKey         InChI                1.03  ULTJSGLMABORQB-XVFCMESISA-O                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
CH "SYSTEMATIC NAME" ACDLabs              10.04 
;5'-cytidylic acid
;
CH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(4-amino-2-oxo-3H-pyrimidin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
CH "Create component"  1999-07-08 EBI  
CH "Modify descriptor" 2011-06-04 RCSB 
# 
