data_5TH
#

_chem_comp.id                                   5TH
_chem_comp.name                                 "[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-2,4-bis(oxidanyl)-5-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate"
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O10 S2"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4-bis(oxidanyl)-5-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-11-28
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       308.283
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5TH
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5EBZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5TH
_pdbx_chem_comp_synonyms.name        "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4-bis(oxidanyl)-5-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5TH  C1   C1   C  0  1  N  N  S  73.090  87.187  109.692   0.803   1.562  -0.200  C1   5TH   1  
5TH  C2   C2   C  0  1  N  N  R  72.749  88.665  109.357   1.070   0.066  -0.013  C2   5TH   2  
5TH  O2   O2   O  0  1  N  N  N  73.582  89.568  110.086   2.277  -0.291  -0.689  O2   5TH   3  
5TH  C3   C3   C  0  1  N  N  S  71.266  88.945  109.660  -0.100  -0.731  -0.598  C3   5TH   4  
5TH  C4   C4   C  0  1  N  N  S  70.410  87.706  109.358  -1.398  -0.283   0.081  C4   5TH   5  
5TH  C5   C5   C  0  1  N  N  R  70.837  86.511  110.236  -1.570   1.226  -0.111  C5   5TH   6  
5TH  C6   C6   C  0  1  N  N  N  70.773  85.181  109.495  -2.834   1.692   0.615  C6   5TH   7  
5TH  O3   O3   O  0  1  N  N  N  70.817  90.045  108.873   0.107  -2.125  -0.364  O3   5TH   8  
5TH  O4   O4   O  0  1  N  N  N  69.018  87.987  109.529  -2.506  -0.968  -0.508  O4   5TH   9  
5TH  O5   O5   O  0  1  N  N  N  72.206  86.674  110.711  -0.434   1.906   0.428  O5   5TH  10  
5TH  O6   O11  O  0  1  N  N  N  70.003  84.225  110.211  -3.059   3.076   0.341  O6   5TH  11  
5TH  S1   S1   S  0  1  N  N  N  74.206  90.644  109.190   3.509  -0.295   0.204  S1   5TH  12  
5TH  S2   S2   S  0  1  N  N  N  68.648  88.387  110.946  -3.619  -1.304   0.474  S2   5TH  13  
5TH  O7   O7   O  0  1  N  N  N  75.066  91.566  110.018   3.434  -1.544   1.071  O7   5TH  14  
5TH  O8   O8   O  0  1  N  N  N  73.126  91.463  108.512   4.627  -0.469  -0.655  O8   5TH  15  
5TH  O9   O9   O  0  1  N  N  N  75.056  89.985  108.139   3.370   0.812   1.084  O9   5TH  16  
5TH  O07  O07  O  0  1  N  N  N  67.148  88.415  111.083  -4.644  -2.012  -0.400  O07  5TH  17  
5TH  H1   H1   H  0  1  N  N  N  72.911  86.610  108.772   1.612   2.136   0.252  H1   5TH  18  
5TH  H2   H3   H  0  1  N  N  N  72.908  88.811  108.278   1.167  -0.156   1.050  H2   5TH  19  
5TH  H3   H4   H  0  1  N  N  N  71.169  89.184  110.729  -0.167  -0.547  -1.670  H3   5TH  20  
5TH  H4   H5   H  0  1  N  N  N  70.590  87.426  108.310  -1.352  -0.513   1.145  H4   5TH  21  
5TH  H5   H6   H  0  1  N  N  N  70.157  86.460  111.099  -1.658   1.450  -1.174  H5   5TH  22  
5TH  H61  H7   H  0  1  N  N  N  71.794  84.794  109.366  -3.688   1.110   0.268  H61  5TH  23  
5TH  H62  H8   H  0  1  N  N  N  70.315  85.343  108.508  -2.710   1.549   1.689  H62  5TH  24  
5TH  HO3  H9   H  0  1  N  Y  N  71.550  90.618  108.682   0.917  -2.475  -0.761  HO3  5TH  25  
5TH  HO6  H10  H  0  1  N  Y  N  69.981  83.408  109.726  -3.845   3.440   0.770  HO6  5TH  26  
5TH  H11  H11  H  0  1  N  N  N  66.915  88.665  111.969  -5.435  -2.300   0.076  H11  5TH  27  
5TH  O1   O1   O  0  1  N  Y  N  74.422  87.010  110.070   0.728   1.862  -1.595  O1   5TH  28  
5TH  H2A  H2   H  0  1  N  N  N  75.961  91.535  109.701   4.177  -1.645   1.681  H2A  5TH  29  
5TH  HO1  HO1  H  0  1  N  Y  N  74.578  86.093  110.263   0.560   2.794  -1.789  HO1  5TH  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5TH  O9   S1   DOUB  N  N   1  
5TH  O8   S1   DOUB  N  N   2  
5TH  O3   C3   SING  N  N   3  
5TH  S1   O7   SING  N  N   4  
5TH  S1   O2   SING  N  N   5  
5TH  C2   C3   SING  N  N   6  
5TH  C2   C1   SING  N  N   7  
5TH  C2   O2   SING  N  N   8  
5TH  C4   O4   SING  N  N   9  
5TH  C4   C3   SING  N  N  10  
5TH  C4   C5   SING  N  N  11  
5TH  C6   O6   SING  N  N  12  
5TH  C6   C5   SING  N  N  13  
5TH  O4   S2   SING  N  N  14  
5TH  C1   O5   SING  N  N  15  
5TH  C5   O5   SING  N  N  16  
5TH  S2   O07  SING  N  N  17  
5TH  C1   H1   SING  N  N  18  
5TH  C2   H2   SING  N  N  19  
5TH  C3   H3   SING  N  N  20  
5TH  C4   H4   SING  N  N  21  
5TH  C5   H5   SING  N  N  22  
5TH  C6   H61  SING  N  N  23  
5TH  C6   H62  SING  N  N  24  
5TH  O3   HO3  SING  N  N  25  
5TH  O6   HO6  SING  N  N  26  
5TH  O07  H11  SING  N  N  27  
5TH  C1   O1   SING  N  N  28  
5TH  O7   H2A  SING  N  N  29  
5TH  O1   HO1  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5TH  InChI             InChI                 1.03   "InChI=1S/C6H12O10S2/c7-1-2-4(15-17-10)3(8)5(6(9)14-2)16-18(11,12)13/h2-10H,1H2,(H,11,12,13)/t2-,3+,4-,5-,6+/m1/s1"  
5TH  InChIKey          InChI                 1.03   OPPADQYGDDCNPC-RXRWUWDJSA-N  
5TH  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](O)[C@H](O[S](O)(=O)=O)[C@@H](O)[C@@H]1OSO"  
5TH  SMILES            CACTVS                3.385  "OC[CH]1O[CH](O)[CH](O[S](O)(=O)=O)[CH](O)[CH]1OSO"  
5TH  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)OS(=O)(=O)O)O)OSO)O"  
5TH  SMILES            "OpenEye OEToolkits"  2.0.4  "C(C1C(C(C(C(O1)O)OS(=O)(=O)O)O)OSO)O"  
#
_pdbx_chem_comp_identifier.comp_id          5TH
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.4
_pdbx_chem_comp_identifier.identifier       "[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4-bis(oxidanyl)-5-oxidanylsulfanyloxy-oxan-3-yl] hydrogen sulfate"
#
_pdbx_chem_comp_related.comp_id            5TH
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  5TH  C1   GLC  C1   "Carbohydrate core"  
 2  5TH  C2   GLC  C2   "Carbohydrate core"  
 3  5TH  C3   GLC  C3   "Carbohydrate core"  
 4  5TH  C4   GLC  C4   "Carbohydrate core"  
 5  5TH  C5   GLC  C5   "Carbohydrate core"  
 6  5TH  C6   GLC  C6   "Carbohydrate core"  
 7  5TH  O1   GLC  O1   "Carbohydrate core"  
 8  5TH  O6   GLC  O6   "Carbohydrate core"  
 9  5TH  O2   GLC  O2   "Carbohydrate core"  
10  5TH  O3   GLC  O3   "Carbohydrate core"  
11  5TH  O4   GLC  O4   "Carbohydrate core"  
12  5TH  O5   GLC  O5   "Carbohydrate core"  
13  5TH  H1   GLC  H1   "Carbohydrate core"  
14  5TH  HO6  GLC  HO6  "Carbohydrate core"  
15  5TH  H2   GLC  H2   "Carbohydrate core"  
16  5TH  H3   GLC  H3   "Carbohydrate core"  
17  5TH  H4   GLC  H4   "Carbohydrate core"  
18  5TH  H5   GLC  H5   "Carbohydrate core"  
19  5TH  H61  GLC  H61  "Carbohydrate core"  
20  5TH  H62  GLC  H62  "Carbohydrate core"  
21  5TH  HO3  GLC  HO3  "Carbohydrate core"  
22  5TH  HO1  GLC  HO1  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
5TH  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
5TH  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
5TH  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
5TH  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5TH  "Create component"          2015-11-28  RCSB  
5TH  "Initial release"           2016-11-02  RCSB  
5TH  "Other modification"        2020-07-03  RCSB  
5TH  "Modify parent residue"     2020-07-17  RCSB  
5TH  "Modify name"               2020-07-17  RCSB  
5TH  "Modify synonyms"           2020-07-17  RCSB  
5TH  "Modify internal type"      2020-07-17  RCSB  
5TH  "Modify linking type"       2020-07-17  RCSB  
5TH  "Modify atom id"            2020-07-17  RCSB  
5TH  "Modify component atom id"  2020-07-17  RCSB  
5TH  "Modify leaving atom flag"  2020-07-17  RCSB  
##
