data_2KH
# 
_chem_comp.id                                    2KH 
_chem_comp.name                                  "5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H16 N3 O14 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-19 
_chem_comp.pdbx_modified_date                    2013-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        483.156 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2KH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4NKT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2KH PA    PA    P 0 1 N N N 63.667 19.290 93.655 1.254  0.834  0.500  PA    2KH 1  
2KH O1A   O1A   O 0 1 N N N 65.099 18.844 94.192 1.094  1.502  -0.811 O1A   2KH 2  
2KH O2A   O2A   O 0 1 N N N 62.844 19.789 94.805 1.534  1.940  1.635  O2A   2KH 3  
2KH N3A   N3A   N 0 1 N N N 62.931 18.002 92.908 2.550  -0.238 0.429  N3A   2KH 4  
2KH "O5'" "O5'" O 0 1 N N N 63.907 20.489 92.632 -0.091 0.026  0.858  "O5'" 2KH 5  
2KH PB    PB    P 0 1 N N N 61.538 17.475 93.613 3.980  0.568  0.056  PB    2KH 6  
2KH O1B   O1B   O 0 1 N N N 60.627 18.688 94.067 3.830  1.293  -1.374 O1B   2KH 7  
2KH O2B   O2B   O 0 1 N N N 60.836 16.737 92.527 4.259  1.583  1.096  O2B   2KH 8  
2KH O3B   O3B   O 0 1 N N N 61.711 16.391 94.796 5.192  -0.489 -0.002 O3B   2KH 9  
2KH PG    PG    P 0 1 N N N 61.605 16.682 96.340 6.770  -0.366 -0.300 PG    2KH 10 
2KH O1G   O1G   O 0 1 N N N 60.374 16.109 96.802 7.350  -1.807 -0.722 O1G   2KH 11 
2KH O2G   O2G   O 0 1 N N N 61.617 18.141 96.662 6.990  0.597  -1.402 O2G   2KH 12 
2KH O3G   O3G   O 0 1 N N N 62.743 16.042 97.082 7.527  0.151  1.023  O3G   2KH 13 
2KH "C5'" "C5'" C 0 1 N N N 62.867 20.949 91.779 -0.723 -0.877 -0.052 "C5'" 2KH 14 
2KH "C4'" "C4'" C 0 1 N N R 63.262 21.867 90.704 -1.972 -1.471 0.603  "C4'" 2KH 15 
2KH "O4'" "O4'" O 0 1 N N N 63.889 23.050 91.224 -2.954 -0.440 0.806  "O4'" 2KH 16 
2KH "C1'" "C1'" C 0 1 N N R 64.953 23.387 90.361 -4.249 -1.052 0.628  "C1'" 2KH 17 
2KH "C2'" "C2'" C 0 1 N N R 64.873 22.423 89.254 -4.037 -2.005 -0.576 "C2'" 2KH 18 
2KH "O2'" "O2'" O 0 1 N N N 64.045 22.876 88.214 -4.980 -3.079 -0.548 "O2'" 2KH 19 
2KH "C3'" "C3'" C 0 1 N N S 64.273 21.257 89.876 -2.600 -2.525 -0.328 "C3'" 2KH 20 
2KH "O3'" "O3'" O 0 1 N N N 63.710 20.341 88.953 -2.634 -3.802 0.313  "O3'" 2KH 21 
2KH N1    N1    N 0 1 N N N 66.218 23.313 91.030 -5.259 -0.039 0.312  N1    2KH 22 
2KH C6    C6    C 0 1 N N N 66.367 22.572 92.172 -6.401 0.037  1.063  C6    2KH 23 
2KH C2    C2    C 0 1 N N N 67.299 23.978 90.508 -5.054 0.811  -0.710 C2    2KH 24 
2KH O2    O2    O 0 1 N N N 67.158 24.673 89.430 -4.030 0.729  -1.361 O2    2KH 25 
2KH N3    N3    N 0 1 N N N 68.502 23.920 91.102 -5.965 1.751  -1.022 N3    2KH 26 
2KH C4    C4    C 0 1 N N N 68.698 23.205 92.223 -7.105 1.855  -0.309 C4    2KH 27 
2KH O4    O4    O 0 1 N N N 69.942 23.139 92.821 -7.930 2.706  -0.591 O4    2KH 28 
2KH C5    C5    C 0 1 N N N 67.605 22.493 92.807 -7.332 0.970  0.772  C5    2KH 29 
2KH H1    H1    H 0 1 N N N 63.351 19.733 95.606 1.650  1.573  2.523  H1    2KH 30 
2KH H2    H2    H 0 1 N N N 63.579 17.240 92.898 2.370  -0.979 -0.231 H2    2KH 31 
2KH H3    H3    H 0 1 N N N 59.827 18.693 93.555 3.645  0.687  -2.104 H3    2KH 32 
2KH H4    H4    H 0 1 N N N 59.843 16.784 97.208 8.297  -1.808 -0.916 H4    2KH 33 
2KH H5    H5    H 0 1 N N N 63.207 16.703 97.582 7.426  -0.433 1.788  H5    2KH 34 
2KH H6    H6    H 0 1 N N N 62.125 21.466 92.405 -1.007 -0.341 -0.957 H6    2KH 35 
2KH H7    H7    H 0 1 N N N 62.402 20.068 91.313 -0.030 -1.679 -0.307 H7    2KH 36 
2KH H8    H8    H 0 1 N N N 62.384 22.134 90.098 -1.709 -1.925 1.558  H8    2KH 37 
2KH H9    H9    H 0 1 N N N 64.805 24.402 89.964 -4.535 -1.613 1.519  H9    2KH 38 
2KH H10   H10   H 0 1 N N N 65.881 22.185 88.884 -4.097 -1.461 -1.518 H10   2KH 39 
2KH H11   H11   H 0 1 N N N 64.437 23.639 87.806 -4.832 -3.750 -1.229 H11   2KH 40 
2KH H12   H12   H 0 1 N N N 65.017 20.750 90.508 -2.049 -2.583 -1.267 H12   2KH 41 
2KH H13   H13   H 0 1 N N N 63.337 19.605 89.424 -3.072 -4.491 -0.205 H13   2KH 42 
2KH H14   H14   H 0 1 N N N 65.519 22.045 92.584 -6.557 -0.647 1.885  H14   2KH 43 
2KH H15   H15   H 0 1 N N N 69.269 24.420 90.701 -5.801 2.356  -1.762 H15   2KH 44 
2KH H16   H16   H 0 1 N N N 67.734 21.914 93.709 -8.237 1.041  1.357  H16   2KH 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2KH "O2'" "C2'" SING N N 1  
2KH "O3'" "C3'" SING N N 2  
2KH "C2'" "C3'" SING N N 3  
2KH "C2'" "C1'" SING N N 4  
2KH O2    C2    DOUB N N 5  
2KH "C3'" "C4'" SING N N 6  
2KH "C1'" N1    SING N N 7  
2KH "C1'" "O4'" SING N N 8  
2KH C2    N1    SING N N 9  
2KH C2    N3    SING N N 10 
2KH "C4'" "O4'" SING N N 11 
2KH "C4'" "C5'" SING N N 12 
2KH N1    C6    SING N N 13 
2KH N3    C4    SING N N 14 
2KH "C5'" "O5'" SING N N 15 
2KH C6    C5    DOUB N N 16 
2KH C4    C5    SING N N 17 
2KH C4    O4    DOUB N N 18 
2KH O2B   PB    DOUB N N 19 
2KH "O5'" PA    SING N N 20 
2KH N3A   PB    SING N N 21 
2KH N3A   PA    SING N N 22 
2KH PB    O1B   SING N N 23 
2KH PB    O3B   SING N N 24 
2KH PA    O1A   DOUB N N 25 
2KH PA    O2A   SING N N 26 
2KH O3B   PG    SING N N 27 
2KH PG    O2G   DOUB N N 28 
2KH PG    O1G   SING N N 29 
2KH PG    O3G   SING N N 30 
2KH O2A   H1    SING N N 31 
2KH N3A   H2    SING N N 32 
2KH O1B   H3    SING N N 33 
2KH O1G   H4    SING N N 34 
2KH O3G   H5    SING N N 35 
2KH "C5'" H6    SING N N 36 
2KH "C5'" H7    SING N N 37 
2KH "C4'" H8    SING N N 38 
2KH "C1'" H9    SING N N 39 
2KH "C2'" H10   SING N N 40 
2KH "O2'" H11   SING N N 41 
2KH "C3'" H12   SING N N 42 
2KH "O3'" H13   SING N N 43 
2KH C6    H14   SING N N 44 
2KH N3    H15   SING N N 45 
2KH C5    H16   SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2KH SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)NP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O"                                                                                                                                    
2KH InChI            InChI                1.03  "InChI=1S/C9H16N3O14P3/c13-5-1-2-12(9(16)10-5)8-7(15)6(14)4(25-8)3-24-27(17,18)11-28(19,20)26-29(21,22)23/h1-2,4,6-8,14-15H,3H2,(H,10,13,16)(H2,21,22,23)(H3,11,17,18,19,20)/t4-,6-,7-,8-/m1/s1" 
2KH InChIKey         InChI                1.03  OZIBFYOFLVBDIY-XVFCMESISA-N                                                                                                                                                                      
2KH SMILES_CANONICAL CACTVS               3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                                             
2KH SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O"                                                                                                                    
2KH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O)O"                                                                                                                
2KH SMILES           "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O)O"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2KH "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine"                                                                      
2KH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-N-[oxidanyl(phosphonooxy)phosphoryl]phosphonamidic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2KH "Create component" 2013-11-19 RCSB 
2KH "Initial release"  2013-12-18 RCSB 
# 
