data_V2G
#

_chem_comp.id                                   V2G
_chem_comp.name                                 "2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]ethanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H17 N6 O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-19
_chem_comp.pdbx_modified_date                   2020-11-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       404.273
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V2G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XHC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V2G  N      N1   N  0  1  N  N  N  12.558  4.554  21.778   5.049  -0.944   0.408  N      V2G   1  
V2G  CA     C1   C  0  1  N  N  N  12.747  3.709  22.953   5.431  -0.231  -0.818  CA     V2G   2  
V2G  C      C2   C  0  1  N  N  N  14.196  3.288  22.915   5.807   1.188  -0.478  C      V2G   3  
V2G  O      O1   O  0  1  N  N  N  14.451  2.114  23.270   6.192   2.032  -1.448  O      V2G   4  
V2G  OXT    O2   O  0  1  N  N  N  15.008  4.175  22.614   5.761   1.566   0.669  OXT    V2G   5  
V2G  P      P1   P  0  1  N  N  N  11.316  5.406  21.685   3.645  -1.842   0.171  P      V2G   6  
V2G  O1     O3   O  0  1  N  N  N  11.042  5.999  23.023   3.888  -2.920  -0.999  O1     V2G   7  
V2G  O2     O4   O  0  1  N  N  N  11.579  6.283  20.513   3.291  -2.545   1.424  O2     V2G   8  
V2G  "O5'"  O5   O  0  1  N  N  N  10.195  4.229  21.421   2.443  -0.856  -0.250  "O5'"  V2G   9  
V2G  "C5'"  C3   C  0  1  N  N  N   9.148  4.348  20.450   1.847   0.075   0.656  "C5'"  V2G  10  
V2G  "C4'"  C4   C  0  1  N  N  R   9.711  5.143  19.287   0.741   0.849  -0.064  "C4'"  V2G  11  
V2G  "O4'"  O6   O  0  1  N  N  N  10.851  4.499  18.675  -0.339  -0.039  -0.399  "O4'"  V2G  12  
V2G  "C3'"  C5   C  0  1  N  N  S   8.741  5.241  18.159   0.171   1.936   0.868  "C3'"  V2G  13  
V2G  "O3'"  O7   O  0  1  N  N  N   7.706  6.196  18.495   0.350   3.232   0.293  "O3'"  V2G  14  
V2G  "C2'"  C6   C  0  1  N  N  R   9.696  5.748  17.063  -1.335   1.594   0.975  "C2'"  V2G  15  
V2G  "O2'"  O8   O  0  1  N  N  N   9.570  7.162  16.856  -2.133   2.779   0.929  "O2'"  V2G  16  
V2G  "C1'"  C7   C  0  1  N  N  R  11.123  5.386  17.591  -1.560   0.724  -0.293  "C1'"  V2G  17  
V2G  N9     N2   N  0  1  Y  N  N  11.864  4.668  16.552  -2.711  -0.165  -0.110  N9     V2G  18  
V2G  C8     C8   C  0  1  Y  N  N  11.633  3.424  16.110  -2.671  -1.459   0.314  C8     V2G  19  
V2G  N7     N3   N  0  1  Y  N  N  12.486  3.188  15.109  -3.875  -1.949   0.362  N7     V2G  20  
V2G  C5     C9   C  0  1  Y  N  N  13.109  4.349  14.842  -4.763  -1.002  -0.027  C5     V2G  21  
V2G  C4     C10  C  0  1  Y  N  N  12.743  5.255  15.765  -4.027   0.156  -0.330  C4     V2G  22  
V2G  N3     N4   N  0  1  Y  N  N  13.312  6.475  15.876  -4.672   1.242  -0.740  N3     V2G  23  
V2G  C2     C11  C  0  1  Y  N  N  14.317  6.945  14.959  -5.983   1.238  -0.863  C2     V2G  24  
V2G  N1     N5   N  0  1  Y  N  N  14.591  5.916  13.943  -6.717   0.175  -0.591  N1     V2G  25  
V2G  C6     C12  C  0  1  Y  N  N  14.025  4.668  13.955  -6.160  -0.956  -0.170  C6     V2G  26  
V2G  N6     N6   N  0  1  N  N  N  14.346  3.706  13.091  -6.938  -2.066   0.112  N6     V2G  27  
V2G  H1     H1   H  0  1  N  N  N  12.561  3.952  20.980   4.943  -0.304   1.180  H1     V2G  28  
V2G  H2     H2   H  0  1  N  N  N  12.535  4.275  23.872   6.282  -0.732  -1.279  H2     V2G  29  
V2G  H3     H3   H  0  1  N  N  N  12.089  2.829  22.904   4.591  -0.228  -1.514  H3     V2G  30  
V2G  H4     H4   H  0  1  N  N  N  15.392  1.983  23.280   6.424   2.932  -1.181  H4     V2G  31  
V2G  H5     H5   H  0  1  N  N  N  11.071  6.947  22.962   4.124  -2.530  -1.852  H5     V2G  32  
V2G  H6     H6   H  0  1  N  N  N   8.286  4.875  20.886   1.422  -0.463   1.503  H6     V2G  33  
V2G  H7     H7   H  0  1  N  N  N   8.834  3.351  20.109   2.606   0.772   1.012  H7     V2G  34  
V2G  H8     H8   H  0  1  N  N  N   9.981  6.152  19.632   1.138   1.308  -0.969  H8     V2G  35  
V2G  H9     H9   H  0  1  N  N  N   8.329  4.256  17.894   0.646   1.886   1.848  H9     V2G  36  
V2G  H10    H10  H  0  1  N  N  N   7.148  5.833  19.173   0.010   3.955   0.837  H10    V2G  37  
V2G  H11    H11  H  0  1  N  N  N   9.507  5.197  16.130  -1.540   1.023   1.880  H11    V2G  38  
V2G  H12    H12  H  0  1  N  N  N   8.698  7.359  16.536  -2.027   3.355   1.698  H12    V2G  39  
V2G  H13    H13  H  0  1  N  N  N  11.652  6.294  17.916  -1.696   1.354  -1.172  H13    V2G  40  
V2G  H14    H14  H  0  1  N  N  N  10.892  2.738  16.493  -1.771  -2.000   0.572  H14    V2G  41  
V2G  H15    H15  H  0  1  N  N  N  14.799  7.910  15.009  -6.476   2.138  -1.199  H15    V2G  42  
V2G  H16    H16  H  0  1  N  N  N  15.044  4.044  12.460  -7.900  -2.023   0.004  H16    V2G  43  
V2G  H17    H17  H  0  1  N  N  N  14.702  2.916  13.590  -6.519  -2.886   0.419  H17    V2G  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V2G  N6     C6     SING  N  N   1  
V2G  N1     C6     DOUB  Y  N   2  
V2G  N1     C2     SING  Y  N   3  
V2G  C6     C5     SING  Y  N   4  
V2G  C5     N7     SING  Y  N   5  
V2G  C5     C4     DOUB  Y  N   6  
V2G  C2     N3     DOUB  Y  N   7  
V2G  N7     C8     DOUB  Y  N   8  
V2G  C4     N3     SING  Y  N   9  
V2G  C4     N9     SING  Y  N  10  
V2G  C8     N9     SING  Y  N  11  
V2G  N9     "C1'"  SING  N  N  12  
V2G  "O2'"  "C2'"  SING  N  N  13  
V2G  "C2'"  "C1'"  SING  N  N  14  
V2G  "C2'"  "C3'"  SING  N  N  15  
V2G  "C1'"  "O4'"  SING  N  N  16  
V2G  "C3'"  "O3'"  SING  N  N  17  
V2G  "C3'"  "C4'"  SING  N  N  18  
V2G  "O4'"  "C4'"  SING  N  N  19  
V2G  "C4'"  "C5'"  SING  N  N  20  
V2G  "C5'"  "O5'"  SING  N  N  21  
V2G  O2     P      DOUB  N  N  22  
V2G  "O5'"  P      SING  N  N  23  
V2G  P      N      SING  N  N  24  
V2G  P      O1     SING  N  N  25  
V2G  N      CA     SING  N  N  26  
V2G  OXT    C      DOUB  N  N  27  
V2G  C      CA     SING  N  N  28  
V2G  C      O      SING  N  N  29  
V2G  N      H1     SING  N  N  30  
V2G  CA     H2     SING  N  N  31  
V2G  CA     H3     SING  N  N  32  
V2G  O      H4     SING  N  N  33  
V2G  O1     H5     SING  N  N  34  
V2G  "C5'"  H6     SING  N  N  35  
V2G  "C5'"  H7     SING  N  N  36  
V2G  "C4'"  H8     SING  N  N  37  
V2G  "C3'"  H9     SING  N  N  38  
V2G  "O3'"  H10    SING  N  N  39  
V2G  "C2'"  H11    SING  N  N  40  
V2G  "O2'"  H12    SING  N  N  41  
V2G  "C1'"  H13    SING  N  N  42  
V2G  C8     H14    SING  N  N  43  
V2G  C2     H15    SING  N  N  44  
V2G  N6     H16    SING  N  N  45  
V2G  N6     H17    SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V2G  SMILES            ACDLabs               12.01  "N(CC(O)=O)P(O)(=O)OCC1OC(C(C1O)O)n2cnc3c2ncnc3N"  
V2G  InChI             InChI                 1.03   "InChI=1S/C12H17N6O8P/c13-10-7-11(15-3-14-10)18(4-16-7)12-9(22)8(21)5(26-12)2-25-27(23,24)17-1-6(19)20/h3-5,8-9,12,21-22H,1-2H2,(H,19,20)(H2,13,14,15)(H2,17,23,24)/t5-,8-,9-,12-/m1/s1"  
V2G  InChIKey          InChI                 1.03   OFENVOUOJQRLCP-JJNLEZRASA-N  
V2G  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)NCC(O)=O)[C@@H](O)[C@H]3O"  
V2G  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)NCC(O)=O)[CH](O)[CH]3O"  
V2G  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(NCC(=O)O)O)O)O)N"  
V2G  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(NCC(=O)O)O)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V2G  "SYSTEMATIC NAME"  ACDLabs               12.01  "{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]amino}acetic acid (non-preferred name)"  
V2G  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]ethanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V2G  "Create component"  2020-06-19  RCSB  
V2G  "Initial release"   2020-12-02  RCSB  
##
