data_P8G
#

_chem_comp.id                                   P8G
_chem_comp.name                                 "(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[4-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[4-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]-1,2,3-triazol-1-yl]-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]-1,2,3-triazol-1-yl]oxane-3,4,5-triol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H40 N6 O16"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-08-06
_chem_comp.pdbx_modified_date                   2020-04-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       680.616
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P8G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Q0Q
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P8G  C25  C1   C  0  1  N  N  N  32.641  -10.728   8.669   11.804   0.447  -0.950  C25  P8G   1  
P8G  C21  C2   C  0  1  N  N  R  31.526  -11.812   6.870    9.461   0.874  -0.674  C21  P8G   2  
P8G  C16  C3   C  0  1  Y  N  N  28.010  -13.291   2.987    3.747  -0.156  -1.560  C16  P8G   3  
P8G  C20  C4   C  0  1  N  N  R  30.155  -13.766   7.228    8.671   2.512   0.890  C20  P8G   4  
P8G  C15  C5   C  0  1  N  N  S  22.874  -13.762  -0.095   -1.344  -3.368   0.541  C15  P8G   5  
P8G  C17  C6   C  0  1  Y  N  N  27.029  -13.633   2.177    3.215  -0.662  -0.423  C17  P8G   6  
P8G  C14  C7   C  0  1  N  N  S  23.749  -12.583  -0.510   -1.285  -1.894   0.953  C14  P8G   7  
P8G  C19  C8   C  0  1  N  N  N  29.906  -15.022   8.069    8.969   3.124   2.260  C19  P8G   8  
P8G  C13  C9   C  0  1  N  N  R  25.064  -12.637   0.221   -0.292  -1.161   0.046  C13  P8G   9  
P8G  C9   C10  C  0  1  N  N  R  18.157   -6.703  -0.996  -10.050   1.585  -0.747  C9   P8G  10  
P8G  C11  C11  C  0  1  N  N  R  22.655  -13.687   1.421    0.063  -3.967   0.616  C11  P8G  11  
P8G  C8   C12  C  0  1  N  N  S  17.585   -7.687  -1.981   -9.937   0.298   0.075  C8   P8G  12  
P8G  C7   C13  C  0  1  N  N  R  18.333   -8.957  -1.773   -8.645   0.341   0.897  C7   P8G  13  
P8G  C5   C14  C  0  1  N  N  R  19.657   -6.539  -1.301   -8.807   1.730  -1.629  C5   P8G  14  
P8G  C6   C15  C  0  1  N  N  R  19.771   -8.723  -2.143   -7.455   0.534  -0.048  C6   P8G  15  
P8G  C4   C16  C  0  1  N  N  N  20.290   -5.552  -0.327   -8.885   3.043  -2.411  C4   P8G  16  
P8G  C1   C17  C  0  1  Y  N  N  21.703  -11.637  -2.289   -4.226   0.297   1.502  C1   P8G  17  
P8G  C3   C18  C  0  1  N  N  N  22.815  -12.617  -2.706   -2.839  -0.245   1.736  C3   P8G  18  
P8G  C2   C19  C  0  1  Y  N  N  21.565  -10.385  -2.679   -5.118  -0.133   0.579  C2   P8G  19  
P8G  O16  O1   O  0  1  N  N  N  32.713  -11.089   7.285   10.487  -0.102  -0.870  O16  P8G  20  
P8G  C22  C20  C  0  1  N  N  R  31.624  -12.138   5.376    8.091   0.193  -0.726  C22  P8G  21  
P8G  O14  O2   O  0  1  N  N  N  31.761  -10.916   4.622    7.893  -0.382  -2.020  O14  P8G  22  
P8G  O13  O3   O  0  1  N  N  N  31.347  -13.039   7.644    9.634   1.496   0.601  O13  P8G  23  
P8G  O12  O4   O  0  1  N  N  N  28.721  -15.677   7.601   10.229   3.798   2.217  O12  P8G  24  
P8G  C24  C21  C  0  1  N  N  S  30.238  -14.161   5.756    7.269   1.897   0.899  C24  P8G  25  
P8G  O15  O5   O  0  1  N  N  N  31.367  -15.025   5.532    7.185   0.917   1.936  O15  P8G  26  
P8G  C23  C22  C  0  1  N  N  S  30.371  -12.904   4.929    7.001   1.234  -0.455  C23  P8G  27  
P8G  O11  O6   O  0  1  N  N  N  30.451  -13.221   3.519    5.724   0.594  -0.430  O11  P8G  28  
P8G  C18  C23  C  0  1  N  N  N  29.342  -14.050   3.109    5.078   0.535  -1.704  C18  P8G  29  
P8G  N6   N1   N  0  1  Y  N  N  27.617  -12.215   3.659    2.861  -0.397  -2.533  N6   P8G  30  
P8G  N5   N2   N  0  1  Y  N  N  26.506  -11.921   3.278    1.845  -1.006  -2.030  N5   P8G  31  
P8G  N4   N3   N  0  1  Y  N  N  26.112  -12.699   2.402    2.016  -1.185  -0.767  N4   P8G  32  
P8G  C12  C24  C  0  1  N  N  R  24.812  -12.647   1.726    1.075  -1.845   0.141  C12  P8G  33  
P8G  O9   O7   O  0  1  N  N  N  25.855  -11.499  -0.143   -0.174   0.199   0.468  O9   P8G  34  
P8G  O8   O8   O  0  1  N  N  N  23.950  -13.754   2.117    0.943  -3.220  -0.226  O8   P8G  35  
P8G  C10  C25  C  0  1  N  N  N  21.496  -14.602   1.868    0.023  -5.424   0.149  C10  P8G  36  
P8G  O7   O9   O  0  1  N  N  N  21.129  -14.310   3.221    1.311  -6.017   0.329  O7   P8G  37  
P8G  O10  O10  O  0  1  N  N  N  23.516  -15.003  -0.442   -1.836  -3.472  -0.797  O10  P8G  38  
P8G  O6   O11  O  0  1  N  N  N  24.008  -12.574  -1.918   -2.581  -1.307   0.815  O6   P8G  39  
P8G  N3   N4   N  0  1  Y  N  N  20.693  -11.920  -1.475   -4.819   1.293   2.169  N3   P8G  40  
P8G  N2   N5   N  0  1  Y  N  N  20.003  -10.941  -1.381   -5.998   1.472   1.688  N2   P8G  41  
P8G  N1   N6   N  0  1  Y  N  N  20.428  -10.022  -2.088   -6.221   0.635   0.736  N1   P8G  42  
P8G  O2   O12  O  0  1  N  N  N  20.357   -7.804  -1.184   -7.639   1.734  -0.806  O2   P8G  43  
P8G  O1   O13  O  0  1  N  N  N  21.665   -5.392  -0.655   -7.784   3.124  -3.318  O1   P8G  44  
P8G  O5   O14  O  0  1  N  N  N  17.964   -7.190   0.312  -10.145   2.707   0.132  O5   P8G  45  
P8G  O4   O15  O  0  1  N  N  N  16.189   -7.962  -1.734  -11.059   0.191   0.954  O4   P8G  46  
P8G  O3   O16  O  0  1  N  N  N  17.774   -9.871  -2.717   -8.493  -0.885   1.614  O3   P8G  47  
P8G  H1   H1   H  0  1  N  N  N  33.553  -10.182   8.954   12.524  -0.358  -1.099  H1   P8G  48  
P8G  H2   H2   H  0  1  N  N  N  31.763  -10.087   8.835   11.857   1.142  -1.787  H2   P8G  49  
P8G  H3   H3   H  0  1  N  N  N  32.552  -11.638   9.281   12.034   0.974  -0.024  H3   P8G  50  
P8G  H4   H4   H  0  1  N  N  N  30.646  -11.168   7.018    9.523   1.628  -1.458  H4   P8G  51  
P8G  H5   H5   H  0  1  N  N  N  29.283  -13.106   7.348    8.722   3.288   0.126  H5   P8G  52  
P8G  H6   H6   H  0  1  N  N  N  21.901  -13.682  -0.601   -2.007  -3.909   1.216  H6   P8G  53  
P8G  H7   H7   H  0  1  N  N  N  26.982  -14.470   1.496    3.659  -0.650   0.562  H7   P8G  54  
P8G  H8   H8   H  0  1  N  N  N  23.231  -11.655  -0.227   -0.957  -1.818   1.990  H8   P8G  55  
P8G  H9   H9   H  0  1  N  N  N  30.764  -15.704   7.975    8.185   3.835   2.519  H9   P8G  56  
P8G  H10  H10  H  0  1  N  N  N  29.777  -14.738   9.124    9.005   2.334   3.010  H10  P8G  57  
P8G  H11  H11  H  0  1  N  N  N  25.589  -13.563  -0.055   -0.645  -1.195  -0.984  H11  P8G  58  
P8G  H12  H12  H  0  1  N  N  N  17.660   -5.730  -1.125  -10.939   1.538  -1.376  H12  P8G  59  
P8G  H13  H13  H  0  1  N  N  N  22.284  -12.666   1.598    0.421  -3.926   1.645  H13  P8G  60  
P8G  H14  H14  H  0  1  N  N  N  17.736   -7.321  -3.007   -9.914  -0.562  -0.595  H14  P8G  61  
P8G  H15  H15  H  0  1  N  N  N  18.240   -9.314  -0.737   -8.689   1.172   1.601  H15  P8G  62  
P8G  H16  H16  H  0  1  N  N  N  19.766   -6.147  -2.323   -8.757   0.894  -2.327  H16  P8G  63  
P8G  H17  H17  H  0  1  N  N  N  19.830   -8.307  -3.160   -7.387  -0.317  -0.725  H17  P8G  64  
P8G  H18  H18  H  0  1  N  N  N  19.778   -4.581  -0.401   -9.820   3.078  -2.970  H18  P8G  65  
P8G  H19  H19  H  0  1  N  N  N  20.198   -5.937   0.699   -8.845   3.882  -1.716  H19  P8G  66  
P8G  H20  H20  H  0  1  N  N  N  22.407  -13.637  -2.646   -2.108   0.550   1.587  H20  P8G  67  
P8G  H21  H21  H  0  1  N  N  N  23.090  -12.393  -3.747   -2.763  -0.622   2.756  H21  P8G  68  
P8G  H22  H22  H  0  1  N  N  N  22.211   -9.801  -3.317   -4.977  -0.928  -0.138  H22  P8G  69  
P8G  H23  H23  H  0  1  N  N  N  32.504  -12.778   5.213    8.044  -0.590   0.031  H23  P8G  70  
P8G  H24  H24  H  0  1  N  N  N  32.539  -10.452   4.908    8.552  -1.048  -2.259  H24  P8G  71  
P8G  H25  H25  H  0  1  N  N  N  28.563  -16.457   8.120   10.483   4.210   3.053  H25  P8G  72  
P8G  H26  H26  H  0  1  N  N  N  29.308  -14.677   5.475    6.530   2.678   1.075  H26  P8G  73  
P8G  H27  H27  H  0  1  N  N  N  31.273  -15.812   6.056    7.348   1.268   2.823  H27  P8G  74  
P8G  H28  H28  H  0  1  N  N  N  29.493  -12.268   5.113    7.016   1.990  -1.240  H28  P8G  75  
P8G  H29  H29  H  0  1  N  N  N  29.217  -14.853   3.850    5.703  -0.021  -2.403  H29  P8G  76  
P8G  H30  H30  H  0  1  N  N  N  29.581  -14.490   2.129    4.923   1.546  -2.079  H30  P8G  77  
P8G  H31  H31  H  0  1  N  N  N  24.316  -11.702   1.991    1.446  -1.776   1.163  H31  P8G  78  
P8G  H32  H32  H  0  1  N  N  N  26.686  -11.530   0.317    0.440   0.724  -0.063  H32  P8G  79  
P8G  H33  H33  H  0  1  N  N  N  20.628  -14.436   1.212   -0.715  -5.973   0.733  H33  P8G  80  
P8G  H34  H34  H  0  1  N  N  N  21.814  -15.653   1.796   -0.249  -5.459  -0.906  H34  P8G  81  
P8G  H35  H35  H  0  1  N  N  N  20.415  -14.878   3.486    1.359  -6.943   0.052  H35  P8G  82  
P8G  H36  H36  H  0  1  N  N  N  22.964  -15.730  -0.180   -1.895  -4.380  -1.125  H36  P8G  83  
P8G  H37  H37  H  0  1  N  N  N  22.066   -4.778  -0.051   -7.769   3.932  -3.848  H37  P8G  84  
P8G  H38  H38  H  0  1  N  N  N  18.324   -6.572   0.937  -10.910   2.680   0.723  H38  P8G  85  
P8G  H39  H39  H  0  1  N  N  N  15.682   -7.168  -1.859  -11.049  -0.599   1.511  H39  P8G  86  
P8G  H40  H40  H  0  1  N  N  N  16.863  -10.033  -2.501   -9.215  -1.074   2.228  H40  P8G  87  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P8G  O3   C7   SING  N  N   1  
P8G  C3   C1   SING  N  N   2  
P8G  C3   O6   SING  N  N   3  
P8G  C2   C1   DOUB  Y  N   4  
P8G  C2   N1   SING  Y  N   5  
P8G  C1   N3   SING  Y  N   6  
P8G  C6   N1   SING  N  N   7  
P8G  C6   C7   SING  N  N   8  
P8G  C6   O2   SING  N  N   9  
P8G  N1   N2   SING  Y  N  10  
P8G  C8   C7   SING  N  N  11  
P8G  C8   O4   SING  N  N  12  
P8G  C8   C9   SING  N  N  13  
P8G  O6   C14  SING  N  N  14  
P8G  N3   N2   DOUB  Y  N  15  
P8G  C5   O2   SING  N  N  16  
P8G  C5   C9   SING  N  N  17  
P8G  C5   C4   SING  N  N  18  
P8G  C9   O5   SING  N  N  19  
P8G  O1   C4   SING  N  N  20  
P8G  C14  C15  SING  N  N  21  
P8G  C14  C13  SING  N  N  22  
P8G  O10  C15  SING  N  N  23  
P8G  O9   C13  SING  N  N  24  
P8G  C15  C11  SING  N  N  25  
P8G  C13  C12  SING  N  N  26  
P8G  C11  C10  SING  N  N  27  
P8G  C11  O8   SING  N  N  28  
P8G  C12  O8   SING  N  N  29  
P8G  C12  N4   SING  N  N  30  
P8G  C10  O7   SING  N  N  31  
P8G  C17  N4   SING  Y  N  32  
P8G  C17  C16  DOUB  Y  N  33  
P8G  N4   N5   SING  Y  N  34  
P8G  C16  C18  SING  N  N  35  
P8G  C16  N6   SING  Y  N  36  
P8G  C18  O11  SING  N  N  37  
P8G  N5   N6   DOUB  Y  N  38  
P8G  O11  C23  SING  N  N  39  
P8G  O14  C22  SING  N  N  40  
P8G  C23  C22  SING  N  N  41  
P8G  C23  C24  SING  N  N  42  
P8G  C22  C21  SING  N  N  43  
P8G  O15  C24  SING  N  N  44  
P8G  C24  C20  SING  N  N  45  
P8G  C21  O16  SING  N  N  46  
P8G  C21  O13  SING  N  N  47  
P8G  C20  O13  SING  N  N  48  
P8G  C20  C19  SING  N  N  49  
P8G  O16  C25  SING  N  N  50  
P8G  O12  C19  SING  N  N  51  
P8G  C25  H1   SING  N  N  52  
P8G  C25  H2   SING  N  N  53  
P8G  C25  H3   SING  N  N  54  
P8G  C21  H4   SING  N  N  55  
P8G  C20  H5   SING  N  N  56  
P8G  C15  H6   SING  N  N  57  
P8G  C17  H7   SING  N  N  58  
P8G  C14  H8   SING  N  N  59  
P8G  C19  H9   SING  N  N  60  
P8G  C19  H10  SING  N  N  61  
P8G  C13  H11  SING  N  N  62  
P8G  C9   H12  SING  N  N  63  
P8G  C11  H13  SING  N  N  64  
P8G  C8   H14  SING  N  N  65  
P8G  C7   H15  SING  N  N  66  
P8G  C5   H16  SING  N  N  67  
P8G  C6   H17  SING  N  N  68  
P8G  C4   H18  SING  N  N  69  
P8G  C4   H19  SING  N  N  70  
P8G  C3   H20  SING  N  N  71  
P8G  C3   H21  SING  N  N  72  
P8G  C2   H22  SING  N  N  73  
P8G  C22  H23  SING  N  N  74  
P8G  O14  H24  SING  N  N  75  
P8G  O12  H25  SING  N  N  76  
P8G  C24  H26  SING  N  N  77  
P8G  O15  H27  SING  N  N  78  
P8G  C23  H28  SING  N  N  79  
P8G  C18  H29  SING  N  N  80  
P8G  C18  H30  SING  N  N  81  
P8G  C12  H31  SING  N  N  82  
P8G  O9   H32  SING  N  N  83  
P8G  C10  H33  SING  N  N  84  
P8G  C10  H34  SING  N  N  85  
P8G  O7   H35  SING  N  N  86  
P8G  O10  H36  SING  N  N  87  
P8G  O1   H37  SING  N  N  88  
P8G  O5   H38  SING  N  N  89  
P8G  O4   H39  SING  N  N  90  
P8G  O3   H40  SING  N  N  91  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P8G  InChI             InChI                 1.03   "InChI=1S/C25H40N6O16/c1-42-25-20(41)22(16(37)13(6-34)47-25)44-8-10-3-31(29-27-10)24-19(40)21(15(36)12(5-33)46-24)43-7-9-2-30(28-26-9)23-18(39)17(38)14(35)11(4-32)45-23/h2-3,11-25,32-41H,4-8H2,1H3/t11-,12-,13-,14+,15+,16+,17+,18-,19-,20-,21+,22+,23-,24-,25-/m1/s1"  
P8G  InChIKey          InChI                 1.03   ZQXDLGAORGHMLS-LZGLEUEQSA-N  
P8G  SMILES_CANONICAL  CACTVS                3.385  "CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](OCc2cn(nn2)[C@@H]3O[C@H](CO)[C@H](O)[C@H](OCc4cn(nn4)[C@@H]5O[C@H](CO)[C@H](O)[C@H](O)[C@H]5O)[C@H]3O)[C@H]1O"  
P8G  SMILES            CACTVS                3.385  "CO[CH]1O[CH](CO)[CH](O)[CH](OCc2cn(nn2)[CH]3O[CH](CO)[CH](O)[CH](OCc4cn(nn4)[CH]5O[CH](CO)[CH](O)[CH](O)[CH]5O)[CH]3O)[CH]1O"  
P8G  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)OCc2cn(nn2)[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)OCc4cn(nn4)[C@H]5[C@@H]([C@H]([C@H]([C@H](O5)CO)O)O)O)O)O"  
P8G  SMILES            "OpenEye OEToolkits"  2.0.7  "COC1C(C(C(C(O1)CO)O)OCc2cn(nn2)C3C(C(C(C(O3)CO)O)OCc4cn(nn4)C5C(C(C(C(O5)CO)O)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          P8G
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{R},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[4-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-[4-[[(2~{R},3~{S},4~{S},5~{R},6~{R})-2-(hydroxymethyl)-6-methoxy-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]-1,2,3-triazol-1-yl]-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]-1,2,3-triazol-1-yl]oxane-3,4,5-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P8G  "Create component"  2019-08-06  RCSB  
P8G  "Initial release"   2020-04-29  RCSB  
##
