data_NEG
#

_chem_comp.id                                   NEG
_chem_comp.name                                 NEGAMYCIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C9 H20 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "3,6-DIAMINO-1-[2-(CARBOXYMETHYL)-2-METHYLHYDRAZINO]-2,3,4,6-TETRADEOXY-L-THREO-HEXOSE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-06-29
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       248.279
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NEG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NEG  O1    O1    O  0  1  N  N  N  26.886  151.317  69.030  -4.326   2.563   0.268  O1    NEG   1  
NEG  C8    C8    C  0  1  N  N  N  27.978  151.048  68.486  -3.635   1.447  -0.014  C8    NEG   2  
NEG  O2    O2    O  0  1  N  N  N  28.957  151.821  68.393  -2.536   1.526  -0.509  O2    NEG   3  
NEG  C7    C7    C  0  1  N  N  N  28.143  149.643  67.899  -4.231   0.096   0.286  C7    NEG   4  
NEG  N3    N3    N  0  1  N  N  N  27.317  149.477  66.693  -3.286  -0.956  -0.112  N3    NEG   5  
NEG  C9    C9    C  0  1  N  N  N  27.873  150.264  65.582  -3.911  -2.283  -0.033  C9    NEG   6  
NEG  N2    N2    N  0  1  N  N  N  26.053  149.899  66.961  -2.149  -0.904   0.644  N2    NEG   7  
NEG  C6    C6    C  0  1  N  N  N  25.102  149.822  66.035  -0.955  -0.705   0.052  C6    NEG   8  
NEG  O4    O4    O  0  1  N  N  N  25.280  149.369  64.907  -0.889  -0.572  -1.151  O4    NEG   9  
NEG  C5    C5    C  0  1  N  N  N  23.732  150.343  66.471   0.299  -0.648   0.886  C5    NEG  10  
NEG  C4    C4    C  0  1  N  N  R  22.851  149.219  67.019   1.507  -0.414  -0.024  C4    NEG  11  
NEG  N4    N4    N  0  1  N  N  N  22.783  148.119  66.046   1.683  -1.571  -0.912  N4    NEG  12  
NEG  C3    C3    C  0  1  N  N  N  21.456  149.785  67.287   2.762  -0.232   0.831  C3    NEG  13  
NEG  C2    C2    C  0  1  N  N  R  20.434  148.665  67.492   3.946   0.125  -0.070  C2    NEG  14  
NEG  O3    O3    O  0  1  N  N  N  20.431  147.825  66.335   3.715   1.398  -0.678  O3    NEG  15  
NEG  C1    C1    C  0  1  N  N  N  20.781  147.834  68.729   5.225   0.185   0.768  C1    NEG  16  
NEG  N1    N1    N  0  1  N  N  N  19.732  146.827  68.943   6.361   0.528  -0.098  N1    NEG  17  
NEG  HO1   HO1   H  0  1  N  N  N  26.909  152.205  69.366  -3.902   3.406   0.058  HO1   NEG  18  
NEG  H71   1H7   H  0  1  N  N  N  29.199  149.488  67.634  -4.433   0.017   1.355  H71   NEG  19  
NEG  H72   2H7   H  0  1  N  N  N  27.820  148.907  68.651  -5.161  -0.023  -0.269  H72   NEG  20  
NEG  H91   1H9   H  0  1  N  N  N  28.012  151.307  65.904  -4.773  -2.318  -0.698  H91   NEG  21  
NEG  H92   2H9   H  0  1  N  N  N  28.843  149.841  65.282  -3.189  -3.043  -0.333  H92   NEG  22  
NEG  H93   3H9   H  0  1  N  N  N  27.180  150.233  64.728  -4.233  -2.472   0.991  H93   NEG  23  
NEG  HN2   HN2   H  0  1  N  N  N  25.836  150.271  67.864  -2.201  -1.011   1.607  HN2   NEG  24  
NEG  H51   1H5   H  0  1  N  N  N  23.874  151.097  67.259   0.222   0.168   1.604  H51   NEG  25  
NEG  H52   2H5   H  0  1  N  N  N  23.232  150.777  65.593   0.424  -1.590   1.420  H52   NEG  26  
NEG  H4    H4    H  0  1  N  N  N  23.275  148.824  67.954   1.342   0.481  -0.623  H4    NEG  27  
NEG  HN41  1HN4  H  0  0  N  N  N  22.768  148.494  65.119   2.434  -1.414  -1.566  HN41  NEG  28  
NEG  HN42  2HN4  H  0  0  N  N  N  23.583  147.529  66.154   1.837  -2.415  -0.380  HN42  NEG  29  
NEG  H31   1H3   H  0  1  N  N  N  21.492  150.405  68.195   2.599   0.570   1.551  H31   NEG  30  
NEG  H32   2H3   H  0  1  N  N  N  21.149  150.383  66.416   2.977  -1.159   1.363  H32   NEG  31  
NEG  H2    H2    H  0  1  N  N  N  19.439  149.109  67.642   4.054  -0.633  -0.845  H2    NEG  32  
NEG  HO3   HO3   H  0  1  N  N  N  20.430  148.363  65.552   3.608   2.122  -0.046  HO3   NEG  33  
NEG  H11   1H1   H  0  1  N  N  N  21.748  147.332  68.577   5.116   0.943   1.543  H11   NEG  34  
NEG  H12   2H1   H  0  1  N  N  N  20.848  148.491  69.609   5.401  -0.786   1.231  H12   NEG  35  
NEG  HN11  1HN1  H  0  0  N  N  N  19.682  146.598  69.915   7.219   0.574   0.432  HN11  NEG  36  
NEG  HN12  2HN1  H  0  0  N  N  N  18.852  147.194  68.641   6.444  -0.125  -0.863  HN12  NEG  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NEG  O1  C8    SING  N  N   1  
NEG  O1  HO1   SING  N  N   2  
NEG  C8  C7    SING  N  N   3  
NEG  C8  O2    DOUB  N  N   4  
NEG  C7  N3    SING  N  N   5  
NEG  C7  H71   SING  N  N   6  
NEG  C7  H72   SING  N  N   7  
NEG  N3  C9    SING  N  N   8  
NEG  N3  N2    SING  N  N   9  
NEG  C9  H91   SING  N  N  10  
NEG  C9  H92   SING  N  N  11  
NEG  C9  H93   SING  N  N  12  
NEG  N2  C6    SING  N  N  13  
NEG  N2  HN2   SING  N  N  14  
NEG  C6  O4    DOUB  N  N  15  
NEG  C6  C5    SING  N  N  16  
NEG  C5  C4    SING  N  N  17  
NEG  C5  H51   SING  N  N  18  
NEG  C5  H52   SING  N  N  19  
NEG  C4  N4    SING  N  N  20  
NEG  C4  C3    SING  N  N  21  
NEG  C4  H4    SING  N  N  22  
NEG  N4  HN41  SING  N  N  23  
NEG  N4  HN42  SING  N  N  24  
NEG  C3  C2    SING  N  N  25  
NEG  C3  H31   SING  N  N  26  
NEG  C3  H32   SING  N  N  27  
NEG  C2  O3    SING  N  N  28  
NEG  C2  C1    SING  N  N  29  
NEG  C2  H2    SING  N  N  30  
NEG  O3  HO3   SING  N  N  31  
NEG  C1  N1    SING  N  N  32  
NEG  C1  H11   SING  N  N  33  
NEG  C1  H12   SING  N  N  34  
NEG  N1  HN11  SING  N  N  35  
NEG  N1  HN12  SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NEG  SMILES            ACDLabs               10.04  "O=C(O)CN(NC(=O)CC(N)CC(O)CN)C"  
NEG  SMILES_CANONICAL  CACTVS                3.341  "CN(CC(O)=O)NC(=O)C[C@H](N)C[C@@H](O)CN"  
NEG  SMILES            CACTVS                3.341  "CN(CC(O)=O)NC(=O)C[CH](N)C[CH](O)CN"  
NEG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[N@@](CC(=O)O)NC(=O)C[C@@H](C[C@H](CN)O)N"  
NEG  SMILES            "OpenEye OEToolkits"  1.5.0  "CN(CC(=O)O)NC(=O)CC(CC(CN)O)N"  
NEG  InChI             InChI                 1.03   "InChI=1S/C9H20N4O4/c1-13(5-9(16)17)12-8(15)3-6(11)2-7(14)4-10/h6-7,14H,2-5,10-11H2,1H3,(H,12,15)(H,16,17)/t6-,7-/m1/s1"  
NEG  InChIKey          InChI                 1.03   IKHFJPZQZVMLRH-RNFRBKRXSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NEG  "SYSTEMATIC NAME"  ACDLabs               10.04  "{2-[(3R,5R)-3,6-diamino-5-hydroxyhexanoyl]-1-methylhydrazino}acetic acid (non-preferred name)"  
NEG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[[[(3R,5R)-3,6-diamino-5-hydroxy-hexanoyl]amino]-methyl-amino]ethanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NEG  "Create component"   2007-06-29  RCSB  
NEG  "Modify descriptor"  2011-06-04  RCSB  
NEG  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     NEG
_pdbx_chem_comp_synonyms.name        "3,6-DIAMINO-1-[2-(CARBOXYMETHYL)-2-METHYLHYDRAZINO]-2,3,4,6-TETRADEOXY-L-THREO-HEXOSE"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
