data_JDG
#

_chem_comp.id                                   JDG
_chem_comp.name                                 "2-cyclohexyl-7-methoxy-N-[1-(propan-2-yl)piperidin-4-yl]-8-[3-(pyrrolidin-1-yl)propoxy]-3H-1,4-benzodiazepin-5-amine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C31 H49 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-08-31
_chem_comp.pdbx_modified_date                   2019-02-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       523.753
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JDG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MBO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JDG  C10  C1   C  0  1  N  N  N  -31.996  16.200  17.978    9.311   0.148   0.353  C10  JDG   1  
JDG  C13  C2   C  0  1  N  N  N  -32.174  15.159  19.967    8.522  -1.601  -1.084  C13  JDG   2  
JDG  C15  C3   C  0  1  Y  N  N  -26.956  20.464  22.152    0.535   0.392   0.269  C15  JDG   3  
JDG  C17  C4   C  0  1  N  N  N  -25.736  22.671  21.342   -1.913  -0.210   0.372  C17  JDG   4  
JDG  C20  C5   C  0  1  N  N  N  -23.149  23.447  19.386   -4.863  -1.241  -1.620  C20  JDG   5  
JDG  C21  C6   C  0  1  N  N  N  -21.894  24.265  19.061   -6.368  -0.967  -1.587  C21  JDG   6  
JDG  C24  C7   C  0  1  N  N  N  -21.518  26.749  16.565   -8.975  -2.063  -1.711  C24  JDG   7  
JDG  C26  C8   C  0  1  N  N  N  -23.225  26.255  18.870   -6.389  -1.053   0.835  C26  JDG   8  
JDG  C01  C9   C  0  1  N  N  N  -29.708  22.324  18.406    0.385  -4.568   0.478  C01  JDG   9  
JDG  C03  C10  C  0  1  Y  N  N  -29.055  21.103  20.336    1.168  -2.325   0.375  C03  JDG  10  
JDG  C04  C11  C  0  1  Y  N  N  -29.145  19.936  21.121    2.185  -1.373   0.313  C04  JDG  11  
JDG  C06  C12  C  0  1  N  N  N  -30.412  17.985  21.775    4.475  -0.739   0.243  C06  JDG  12  
JDG  C07  C13  C  0  1  N  N  N  -31.826  17.363  21.525    5.868  -1.371   0.245  C07  JDG  13  
JDG  C08  C14  C  0  1  N  N  N  -32.184  17.214  20.014    6.928  -0.270   0.176  C08  JDG  14  
JDG  C11  C15  C  0  1  N  N  N  -31.804  14.943  17.598   10.270   0.033  -0.851  C11  JDG  15  
JDG  C12  C16  C  0  1  N  N  N  -31.855  14.133  18.826   10.039  -1.420  -1.343  C12  JDG  16  
JDG  C14  C17  C  0  1  Y  N  N  -28.114  19.612  22.017    1.872  -0.029   0.261  C14  JDG  17  
JDG  C16  C18  C  0  1  Y  N  N  -26.892  21.616  21.362   -0.486  -0.563   0.340  C16  JDG  18  
JDG  C19  C19  C  0  1  N  N  N  -24.193  24.258  19.981   -4.220  -0.686  -0.347  C19  JDG  19  
JDG  C23  C20  C  0  1  N  N  N  -21.230  26.007  17.889   -8.421  -1.480  -0.410  C23  JDG  20  
JDG  C25  C21  C  0  1  N  N  N  -20.649  26.934  18.975   -9.004  -2.243   0.781  C25  JDG  21  
JDG  C27  C22  C  0  1  N  N  N  -24.484  25.464  19.243   -4.884  -1.330   0.874  C27  JDG  22  
JDG  C29  C23  C  0  1  N  N  N  -23.906  21.661  22.890   -1.531   1.684   1.802  C29  JDG  23  
JDG  C30  C24  C  0  1  N  N  N  -24.754  20.691  23.709   -0.582   2.367   0.858  C30  JDG  24  
JDG  C31  C25  C  0  1  N  N  N  -24.048  20.061  24.974   -0.680   3.861   0.686  C31  JDG  25  
JDG  C32  C26  C  0  1  N  N  N  -23.570  18.761  24.320   -2.025   4.214   0.049  C32  JDG  26  
JDG  C33  C27  C  0  1  N  N  N  -23.005  17.778  25.348   -2.124   5.731  -0.125  C33  JDG  27  
JDG  C34  C28  C  0  1  N  N  N  -22.719  18.440  26.700   -0.989   6.216  -1.029  C34  JDG  28  
JDG  C35  C29  C  0  1  N  N  N  -23.956  19.110  27.312    0.356   5.863  -0.392  C35  JDG  29  
JDG  C36  C30  C  0  1  N  N  N  -24.833  19.796  26.264    0.456   4.346  -0.218  C36  JDG  30  
JDG  C38  C31  C  0  1  Y  N  N  -27.940  21.937  20.453   -0.152  -1.925   0.388  C38  JDG  31  
JDG  N09  N1   N  0  1  N  N  N  -31.697  16.242  19.536    8.266  -0.877   0.179  N09  JDG  32  
JDG  N18  N2   N  0  1  N  N  N  -25.450  23.436  20.054   -2.788  -0.996  -0.346  N18  JDG  33  
JDG  N22  N3   N  0  1  N  N  N  -22.226  25.408  18.256   -6.957  -1.604  -0.402  N22  JDG  34  
JDG  N28  N4   N  0  1  N  N  N  -24.748  22.759  22.420   -2.398   0.789   1.028  N28  JDG  35  
JDG  N37  N5   N  0  1  N  N  N  -25.912  20.047  23.117    0.302   1.732   0.199  N37  JDG  36  
JDG  O02  O1   O  0  1  N  N  N  -30.091  21.424  19.439    1.477  -3.648   0.419  O02  JDG  37  
JDG  O05  O2   O  0  1  N  N  N  -30.309  19.124  20.956    3.485  -1.768   0.307  O05  JDG  38  
JDG  H1   H1   H  0  1  N  N  N  -31.310  16.870  17.440    9.856  -0.031   1.280  H1   JDG  39  
JDG  H2   H2   H  0  1  N  N  N  -33.035  16.504  17.781    8.858   1.140   0.376  H2   JDG  40  
JDG  H3   H3   H  0  1  N  N  N  -33.259  15.244  20.126    7.944  -1.162  -1.897  H3   JDG  41  
JDG  H4   H4   H  0  1  N  N  N  -31.687  14.863  20.908    8.279  -2.658  -0.974  H4   JDG  42  
JDG  H5   H5   H  0  1  N  N  N  -23.533  23.002  18.456   -4.690  -2.316  -1.677  H5   JDG  43  
JDG  H6   H6   H  0  1  N  N  N  -22.878  22.647  20.090   -4.424  -0.755  -2.491  H6   JDG  44  
JDG  H7   H7   H  0  1  N  N  N  -21.182  23.631  18.512   -6.541   0.108  -1.544  H7   JDG  45  
JDG  H8   H8   H  0  1  N  N  N  -21.433  24.606  19.999   -6.832  -1.374  -2.486  H8   JDG  46  
JDG  H9   H9   H  0  1  N  N  N  -20.615  27.286  16.241   -8.700  -3.115  -1.783  H9   JDG  47  
JDG  H10  H10  H  0  1  N  N  N  -21.808  26.021  15.793  -10.061  -1.971  -1.716  H10  JDG  48  
JDG  H11  H11  H  0  1  N  N  N  -22.337  27.467  16.718   -8.560  -1.519  -2.559  H11  JDG  49  
JDG  H12  H12  H  0  1  N  N  N  -22.802  26.703  19.781   -6.866  -1.522   1.695  H12  JDG  50  
JDG  H13  H13  H  0  1  N  N  N  -23.500  27.052  18.163   -6.561   0.023   0.866  H13  JDG  51  
JDG  H14  H14  H  0  1  N  N  N  -30.571  22.522  17.753    0.770  -5.588   0.509  H14  JDG  52  
JDG  H15  H15  H  0  1  N  N  N  -29.362  23.268  18.852   -0.205  -4.375   1.374  H15  JDG  53  
JDG  H16  H16  H  0  1  N  N  N  -28.895  21.878  17.815   -0.243  -4.444  -0.404  H16  JDG  54  
JDG  H17  H17  H  0  1  N  N  N  -29.629  17.259  21.511    4.373  -0.081   1.106  H17  JDG  55  
JDG  H18  H18  H  0  1  N  N  N  -30.307  18.270  22.832    4.340  -0.162  -0.672  H18  JDG  56  
JDG  H19  H19  H  0  1  N  N  N  -32.579  18.010  21.999    6.003  -1.949   1.160  H19  JDG  57  
JDG  H20  H20  H  0  1  N  N  N  -31.854  16.366  21.989    5.971  -2.029  -0.618  H20  JDG  58  
JDG  H21  H21  H  0  1  N  N  N  -31.817  18.098  19.473    6.793   0.308  -0.738  H21  JDG  59  
JDG  H22  H22  H  0  1  N  N  N  -33.277  17.150  19.913    6.826   0.387   1.040  H22  JDG  60  
JDG  H23  H23  H  0  1  N  N  N  -32.595  14.630  16.901   10.002   0.750  -1.627  H23  JDG  61  
JDG  H24  H24  H  0  1  N  N  N  -30.823  14.837  17.111   11.304   0.173  -0.535  H24  JDG  62  
JDG  H25  H25  H  0  1  N  N  N  -32.646  13.372  18.756   10.622  -2.129  -0.756  H25  JDG  63  
JDG  H26  H26  H  0  1  N  N  N  -30.888  13.641  19.006   10.267  -1.513  -2.405  H26  JDG  64  
JDG  H27  H27  H  0  1  N  N  N  -28.188  18.714  22.613    2.663   0.704   0.213  H27  JDG  65  
JDG  H28  H28  H  0  1  N  N  N  -23.897  24.527  21.006   -4.358   0.395  -0.310  H28  JDG  66  
JDG  H29  H29  H  0  1  N  N  N  -20.429  25.290  17.655   -8.696  -0.428  -0.337  H29  JDG  67  
JDG  H30  H30  H  0  1  N  N  N  -20.464  26.355  19.892   -8.728  -3.295   0.708  H30  JDG  68  
JDG  H31  H31  H  0  1  N  N  N  -19.703  27.368  18.619   -8.609  -1.828   1.708  H31  JDG  69  
JDG  H32  H32  H  0  1  N  N  N  -21.365  27.741  19.189  -10.090  -2.151   0.775  H32  JDG  70  
JDG  H33  H33  H  0  1  N  N  N  -25.131  26.105  19.860   -4.459  -0.907   1.784  H33  JDG  71  
JDG  H34  H34  H  0  1  N  N  N  -25.013  25.190  18.318   -4.711  -2.406   0.857  H34  JDG  72  
JDG  H35  H35  H  0  1  N  N  N  -23.474  21.133  22.027   -0.967   1.107   2.533  H35  JDG  73  
JDG  H36  H36  H  0  1  N  N  N  -23.096  22.061  23.518   -2.137   2.431   2.314  H36  JDG  74  
JDG  H38  H38  H  0  1  N  N  N  -23.169  20.677  25.217   -0.601   4.345   1.660  H38  JDG  75  
JDG  H39  H39  H  0  1  N  N  N  -24.420  18.288  23.806   -2.104   3.731  -0.925  H39  JDG  76  
JDG  H40  H40  H  0  1  N  N  N  -22.785  18.999  23.587   -2.834   3.869   0.692  H40  JDG  77  
JDG  H41  H41  H  0  1  N  N  N  -23.734  16.968  25.499   -3.083   5.983  -0.580  H41  JDG  78  
JDG  H42  H42  H  0  1  N  N  N  -22.067  17.358  24.956   -2.046   6.215   0.848  H42  JDG  79  
JDG  H43  H43  H  0  1  N  N  N  -22.356  17.671  27.397   -1.068   5.733  -2.003  H43  JDG  80  
JDG  H44  H44  H  0  1  N  N  N  -21.940  19.204  26.559   -1.060   7.297  -1.153  H44  JDG  81  
JDG  H45  H45  H  0  1  N  N  N  -23.624  19.864  28.041    1.165   6.209  -1.036  H45  JDG  82  
JDG  H46  H46  H  0  1  N  N  N  -24.555  18.343  27.825    0.435   6.346   0.582  H46  JDG  83  
JDG  H47  H47  H  0  1  N  N  N  -25.193  20.753  26.668    1.414   4.095   0.236  H47  JDG  84  
JDG  H48  H48  H  0  1  N  N  N  -25.692  19.148  26.035    0.377   3.863  -1.191  H48  JDG  85  
JDG  H49  H49  H  0  1  N  N  N  -27.873  22.831  19.850   -0.936  -2.666   0.437  H49  JDG  86  
JDG  H37  H37  H  0  1  N  N  N  -26.081  23.392  19.279   -2.456  -1.755  -0.850  H37  JDG  87  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JDG  C24  C23  SING  N  N   1  
JDG  C11  C10  SING  N  N   2  
JDG  C11  C12  SING  N  N   3  
JDG  C23  N22  SING  N  N   4  
JDG  C23  C25  SING  N  N   5  
JDG  C10  N09  SING  N  N   6  
JDG  N22  C26  SING  N  N   7  
JDG  N22  C21  SING  N  N   8  
JDG  C01  O02  SING  N  N   9  
JDG  C12  C13  SING  N  N  10  
JDG  C26  C27  SING  N  N  11  
JDG  C21  C20  SING  N  N  12  
JDG  C27  C19  SING  N  N  13  
JDG  C20  C19  SING  N  N  14  
JDG  O02  C03  SING  N  N  15  
JDG  N09  C13  SING  N  N  16  
JDG  N09  C08  SING  N  N  17  
JDG  C19  N18  SING  N  N  18  
JDG  C08  C07  SING  N  N  19  
JDG  N18  C17  SING  N  N  20  
JDG  C03  C38  SING  Y  N  21  
JDG  C03  C04  DOUB  Y  N  22  
JDG  C38  C16  DOUB  Y  N  23  
JDG  O05  C04  SING  N  N  24  
JDG  O05  C06  SING  N  N  25  
JDG  C04  C14  SING  Y  N  26  
JDG  C17  C16  SING  N  N  27  
JDG  C17  N28  DOUB  N  N  28  
JDG  C16  C15  SING  Y  N  29  
JDG  C07  C06  SING  N  N  30  
JDG  C14  C15  DOUB  Y  N  31  
JDG  C15  N37  SING  N  N  32  
JDG  N28  C29  SING  N  N  33  
JDG  C29  C30  SING  N  N  34  
JDG  N37  C30  DOUB  N  N  35  
JDG  C30  C31  SING  N  N  36  
JDG  C32  C31  SING  N  N  37  
JDG  C32  C33  SING  N  N  38  
JDG  C31  C36  SING  N  N  39  
JDG  C33  C34  SING  N  N  40  
JDG  C36  C35  SING  N  N  41  
JDG  C34  C35  SING  N  N  42  
JDG  C10  H1   SING  N  N  43  
JDG  C10  H2   SING  N  N  44  
JDG  C13  H3   SING  N  N  45  
JDG  C13  H4   SING  N  N  46  
JDG  C20  H5   SING  N  N  47  
JDG  C20  H6   SING  N  N  48  
JDG  C21  H7   SING  N  N  49  
JDG  C21  H8   SING  N  N  50  
JDG  C24  H9   SING  N  N  51  
JDG  C24  H10  SING  N  N  52  
JDG  C24  H11  SING  N  N  53  
JDG  C26  H12  SING  N  N  54  
JDG  C26  H13  SING  N  N  55  
JDG  C01  H14  SING  N  N  56  
JDG  C01  H15  SING  N  N  57  
JDG  C01  H16  SING  N  N  58  
JDG  C06  H17  SING  N  N  59  
JDG  C06  H18  SING  N  N  60  
JDG  C07  H19  SING  N  N  61  
JDG  C07  H20  SING  N  N  62  
JDG  C08  H21  SING  N  N  63  
JDG  C08  H22  SING  N  N  64  
JDG  C11  H23  SING  N  N  65  
JDG  C11  H24  SING  N  N  66  
JDG  C12  H25  SING  N  N  67  
JDG  C12  H26  SING  N  N  68  
JDG  C14  H27  SING  N  N  69  
JDG  C19  H28  SING  N  N  70  
JDG  C23  H29  SING  N  N  71  
JDG  C25  H30  SING  N  N  72  
JDG  C25  H31  SING  N  N  73  
JDG  C25  H32  SING  N  N  74  
JDG  C27  H33  SING  N  N  75  
JDG  C27  H34  SING  N  N  76  
JDG  C29  H35  SING  N  N  77  
JDG  C29  H36  SING  N  N  78  
JDG  C31  H38  SING  N  N  79  
JDG  C32  H39  SING  N  N  80  
JDG  C32  H40  SING  N  N  81  
JDG  C33  H41  SING  N  N  82  
JDG  C33  H42  SING  N  N  83  
JDG  C34  H43  SING  N  N  84  
JDG  C34  H44  SING  N  N  85  
JDG  C35  H45  SING  N  N  86  
JDG  C35  H46  SING  N  N  87  
JDG  C36  H47  SING  N  N  88  
JDG  C36  H48  SING  N  N  89  
JDG  C38  H49  SING  N  N  90  
JDG  N18  H37  SING  N  N  91  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JDG  SMILES            ACDLabs               12.01  "C1N(CCC1)CCCOc5c(cc2c(N=C(CN=C2NC3CCN(CC3)C(C)C)C4CCCCC4)c5)OC"  
JDG  InChI             InChI                 1.03   "InChI=1S/C31H49N5O2/c1-23(2)36-17-12-25(13-18-36)33-31-26-20-29(37-3)30(38-19-9-16-35-14-7-8-15-35)21-27(26)34-28(22-32-31)24-10-5-4-6-11-24/h20-21,23-25H,4-19,22H2,1-3H3,(H,32,33)"  
JDG  InChIKey          InChI                 1.03   CEYUGMZUIYBLTQ-UHFFFAOYSA-N  
JDG  SMILES_CANONICAL  CACTVS                3.385  "COc1cc2C(=NCC(=Nc2cc1OCCCN3CCCC3)C4CCCCC4)NC5CCN(CC5)C(C)C"  
JDG  SMILES            CACTVS                3.385  "COc1cc2C(=NCC(=Nc2cc1OCCCN3CCCC3)C4CCCCC4)NC5CCN(CC5)C(C)C"  
JDG  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)N1CCC(CC1)NC2=NCC(=Nc3c2cc(c(c3)OCCCN4CCCC4)OC)C5CCCCC5"  
JDG  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)N1CCC(CC1)NC2=NCC(=Nc3c2cc(c(c3)OCCCN4CCCC4)OC)C5CCCCC5"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JDG  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-cyclohexyl-7-methoxy-N-[1-(propan-2-yl)piperidin-4-yl]-8-[3-(pyrrolidin-1-yl)propoxy]-3H-1,4-benzodiazepin-5-amine"  
JDG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-cyclohexyl-7-methoxy-~{N}-(1-propan-2-ylpiperidin-4-yl)-8-(3-pyrrolidin-1-ylpropoxy)-3~{H}-1,4-benzodiazepin-5-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JDG  "Create component"  2018-08-31  RCSB  
JDG  "Initial release"   2019-02-27  RCSB  
##
