data_F5G
# 
_chem_comp.id                                    F5G 
_chem_comp.name                                  
"(2R,3R,4S,5R,6S)-3-(acetylamino)-5-(formylamino)-4-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H28 N4 O16 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-02-28 
_chem_comp.pdbx_modified_date                    2018-10-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        618.380 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     F5G 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6CI5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
F5G C15  C1  C 0 1 N N N 32.357 27.679 -1.359 3.281  2.256  -0.414 C15  F5G 1  
F5G C17  C2  C 0 1 N N S 34.609 27.952 -1.821 5.646  2.302  0.436  C17  F5G 2  
F5G C21  C3  C 0 1 N N N 36.347 31.515 0.078  6.671  -2.308 0.988  C21  F5G 3  
F5G C24  C4  C 0 1 N N N 34.546 30.643 2.314  6.201  -2.771 -1.653 C24  F5G 4  
F5G C01  C5  C 0 1 N N R 30.734 22.831 6.713  -6.867 -1.116 0.308  C01  F5G 5  
F5G C03  C6  C 0 1 N N N 31.784 20.742 7.794  -8.699 -2.717 0.175  C03  F5G 6  
F5G C05  C7  C 0 1 N N S 32.088 23.083 6.050  -5.954 -1.469 -0.869 C05  F5G 7  
F5G C06  C8  C 0 1 N N N 33.044 23.670 7.031  -6.002 -2.978 -1.118 C06  F5G 8  
F5G C08  C9  C 0 1 N N R 30.959 23.521 3.915  -4.451 0.323  -0.339 C08  F5G 9  
F5G C16  C10 C 0 1 N N R 33.437 28.441 -2.100 4.244  1.696  0.635  C16  F5G 10 
F5G C18  C11 C 0 1 N N R 35.538 29.128 -2.028 6.561  1.075  0.204  C18  F5G 11 
F5G C19  C12 C 0 1 N N R 34.700 30.351 -1.551 5.725  -0.075 0.821  C19  F5G 12 
F5G C23  C13 C 0 1 N N N 35.747 31.405 2.604  6.804  -3.759 -0.838 C23  F5G 13 
F5G C25  C14 C 0 1 N N N 34.215 30.304 0.942  5.857  -1.586 -1.104 C25  F5G 14 
F5G C34  C15 C 0 1 N N R 29.599 23.227 4.564  -5.304 0.748  0.861  C34  F5G 15 
F5G C36  C16 C 0 1 N N N 27.613 24.669 5.331  -3.814 0.549  2.779  C36  F5G 16 
F5G C37  C17 C 0 1 N N N 26.654 23.485 5.232  -3.337 -0.169 4.015  C37  F5G 17 
F5G C39  C18 C 0 1 N N S 29.751 22.306 5.724  -6.768 0.386  0.591  C39  F5G 18 
F5G N02  N1  N 0 1 N N N 30.874 21.876 7.856  -8.251 -1.462 -0.025 N02  F5G 19 
F5G N20  N2  N 0 1 N N N 35.074 30.716 -0.155 6.097  -1.360 0.225  N20  F5G 20 
F5G N22  N3  N 0 1 N N N 36.629 31.835 1.537  7.023  -3.497 0.466  N22  F5G 21 
F5G N35  N4  N 0 1 N N N 29.023 24.527 5.005  -4.840 0.049  2.062  N35  F5G 22 
F5G O04  O1  O 0 1 N N N 31.874 20.006 8.718  -7.957 -3.561 0.630  O04  F5G 23 
F5G O07  O2  O 0 1 N N N 31.941 24.015 4.895  -4.614 -1.078 -0.565 O07  F5G 24 
F5G O09  O3  O 0 1 N N N 30.815 24.476 2.948  -3.077 0.607  -0.071 O09  F5G 25 
F5G O11  O4  O 0 1 N N N 32.171 23.280 1.111  -2.516 2.117  -2.014 O11  F5G 26 
F5G O12  O5  O 0 1 N N N 31.668 25.782 0.747  -0.603 1.355  -0.555 O12  F5G 27 
F5G O14  O6  O 0 1 N N N 32.202 28.267 -0.097 1.960  1.779  -0.152 O14  F5G 28 
F5G O26  O7  O 0 1 N N N 36.008 31.681 3.726  7.123  -4.835 -1.311 O26  F5G 29 
F5G O27  O8  O 0 1 N N N 37.058 31.858 -0.802 6.879  -2.084 2.165  O27  F5G 30 
F5G O28  O9  O 0 1 N N N 33.475 29.986 -1.600 4.367  0.273  0.474  O28  F5G 31 
F5G O29  O10 O 0 1 N N N 35.860 29.257 -3.345 7.804  1.228  0.892  O29  F5G 32 
F5G O30  O11 O 0 1 N N N 34.962 26.832 -2.766 6.052  3.017  1.605  O30  F5G 33 
F5G O31  O12 O 0 1 N N N 32.262 27.664 2.426  0.409  3.751  -0.938 O31  F5G 34 
F5G O32  O13 O 0 1 N N N 30.086 27.749 1.278  0.969  1.827  -2.473 O32  F5G 35 
F5G O33  O14 O 0 1 N N N 33.324 24.919 2.528  -1.820 -0.302 -2.194 O33  F5G 36 
F5G O38  O15 O 0 1 N N N 27.202 25.723 5.679  -3.275 1.578  2.430  O38  F5G 37 
F5G O40  O16 O 0 1 N N N 30.219 21.012 5.236  -7.240 1.118  -0.542 O40  F5G 38 
F5G P10  P1  P 0 1 N N N 32.021 24.598 1.833  -2.015 0.970  -1.226 P10  F5G 39 
F5G P13  P2  P 0 1 N N N 31.544 27.380 1.129  0.690  2.170  -1.060 P13  F5G 40 
F5G H152 H1  H 0 0 N N N 31.410 27.736 -1.916 3.290  3.345  -0.370 H152 F5G 41 
F5G H151 H2  H 0 0 N N N 32.653 26.626 -1.246 3.595  1.931  -1.406 H151 F5G 42 
F5G H171 H3  H 0 0 N N N 34.689 27.598 -0.783 5.659  2.958  -0.434 H171 F5G 43 
F5G H241 H4  H 0 0 N N N 33.899 30.328 3.119  6.018  -2.962 -2.700 H241 F5G 44 
F5G H011 H5  H 0 0 N N N 30.361 23.790 7.103  -6.555 -1.675 1.191  H011 F5G 45 
F5G H031 H6  H 0 0 N N N 32.376 20.572 6.907  -9.720 -2.971 -0.071 H031 F5G 46 
F5G H051 H7  H 0 0 N N N 32.486 22.123 5.689  -6.293 -0.942 -1.762 H051 F5G 47 
F5G H062 H8  H 0 0 N N N 33.158 22.988 7.886  -7.025 -3.276 -1.349 H062 F5G 48 
F5G H063 H9  H 0 0 N N N 34.021 23.818 6.547  -5.352 -3.228 -1.957 H063 F5G 49 
F5G H061 H10 H 0 0 N N N 32.659 24.638 7.383  -5.663 -3.504 -0.226 H061 F5G 50 
F5G H081 H11 H 0 0 N N N 31.336 22.586 3.476  -4.770 0.874  -1.224 H081 F5G 51 
F5G H161 H12 H 0 0 N N N 33.217 28.435 -3.178 3.879  1.925  1.636  H161 F5G 52 
F5G H181 H13 H 0 0 N N N 36.427 29.022 -1.389 6.725  0.909  -0.861 H181 F5G 53 
F5G H191 H14 H 0 0 N N N 34.915 31.200 -2.217 5.852  -0.104 1.903  H191 F5G 54 
F5G H251 H15 H 0 0 N N N 33.319 29.738 0.734  5.396  -0.820 -1.710 H251 F5G 55 
F5G H341 H16 H 0 0 N N N 28.938 22.768 3.814  -5.215 1.824  1.009  H341 F5G 56 
F5G H372 H17 H 0 0 N N N 25.642 23.807 5.520  -2.507 0.381  4.457  H372 F5G 57 
F5G H373 H18 H 0 0 N N N 26.639 23.111 4.198  -4.153 -0.236 4.734  H373 F5G 58 
F5G H371 H19 H 0 0 N N N 26.990 22.684 5.907  -3.006 -1.173 3.747  H371 F5G 59 
F5G H391 H20 H 0 0 N N N 28.775 22.182 6.217  -7.372 0.633  1.464  H391 F5G 60 
F5G H021 H21 H 0 0 N N N 30.329 22.020 8.682  -8.845 -0.786 -0.389 H021 F5G 61 
F5G H221 H22 H 0 0 N N N 37.449 32.359 1.768  7.437  -4.169 1.031  H221 F5G 62 
F5G H351 H23 H 0 0 N N N 29.622 25.324 5.079  -5.271 -0.774 2.342  H351 F5G 63 
F5G H291 H24 H 0 0 N N N 36.443 29.999 -3.458 8.323  1.990  0.602  H291 F5G 64 
F5G H301 H25 H 0 0 N N N 35.820 26.489 -2.545 6.939  3.397  1.546  H301 F5G 65 
F5G H1   H26 H 0 1 N N N 31.646 28.014 3.059  0.218  4.048  -0.038 H1   F5G 66 
F5G H2   H27 H 0 1 N N N 33.952 24.226 2.361  -1.492 -1.093 -1.744 H2   F5G 67 
F5G H401 H28 H 0 0 N N N 30.320 20.415 5.968  -8.162 0.937  -0.771 H401 F5G 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
F5G O29 C18  SING N N 1  
F5G O30 C17  SING N N 2  
F5G C16 C17  SING N N 3  
F5G C16 O28  SING N N 4  
F5G C16 C15  SING N N 5  
F5G C18 C17  SING N N 6  
F5G C18 C19  SING N N 7  
F5G O28 C19  SING N N 8  
F5G C19 N20  SING N N 9  
F5G C15 O14  SING N N 10 
F5G O27 C21  DOUB N N 11 
F5G N20 C21  SING N N 12 
F5G N20 C25  SING N N 13 
F5G O14 P13  SING N N 14 
F5G C21 N22  SING N N 15 
F5G O12 P13  SING N N 16 
F5G O12 P10  SING N N 17 
F5G C25 C24  DOUB N N 18 
F5G O11 P10  DOUB N N 19 
F5G P13 O32  DOUB N N 20 
F5G P13 O31  SING N N 21 
F5G N22 C23  SING N N 22 
F5G P10 O33  SING N N 23 
F5G P10 O09  SING N N 24 
F5G C24 C23  SING N N 25 
F5G C23 O26  DOUB N N 26 
F5G O09 C08  SING N N 27 
F5G C08 C34  SING N N 28 
F5G C08 O07  SING N N 29 
F5G C34 N35  SING N N 30 
F5G C34 C39  SING N N 31 
F5G O07 C05  SING N N 32 
F5G N35 C36  SING N N 33 
F5G C37 C36  SING N N 34 
F5G O40 C39  SING N N 35 
F5G C36 O38  DOUB N N 36 
F5G C39 C01  SING N N 37 
F5G C05 C01  SING N N 38 
F5G C05 C06  SING N N 39 
F5G C01 N02  SING N N 40 
F5G C03 N02  SING N N 41 
F5G C03 O04  DOUB N N 42 
F5G C15 H152 SING N N 43 
F5G C15 H151 SING N N 44 
F5G C17 H171 SING N N 45 
F5G C24 H241 SING N N 46 
F5G C01 H011 SING N N 47 
F5G C03 H031 SING N N 48 
F5G C05 H051 SING N N 49 
F5G C06 H062 SING N N 50 
F5G C06 H063 SING N N 51 
F5G C06 H061 SING N N 52 
F5G C08 H081 SING N N 53 
F5G C16 H161 SING N N 54 
F5G C18 H181 SING N N 55 
F5G C19 H191 SING N N 56 
F5G C25 H251 SING N N 57 
F5G C34 H341 SING N N 58 
F5G C37 H372 SING N N 59 
F5G C37 H373 SING N N 60 
F5G C37 H371 SING N N 61 
F5G C39 H391 SING N N 62 
F5G N02 H021 SING N N 63 
F5G N22 H221 SING N N 64 
F5G N35 H351 SING N N 65 
F5G O29 H291 SING N N 66 
F5G O30 H301 SING N N 67 
F5G O31 H1   SING N N 68 
F5G O33 H2   SING N N 69 
F5G O40 H401 SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
F5G SMILES           ACDLabs              12.01 "C(OP(OP(OC1C(NC(=O)C)C(C(NC=O)C(C)O1)O)(=O)O)(O)=O)C3C(C(C(N2C(NC(C=C2)=O)=O)O3)O)O" 
F5G InChI            InChI                1.03  
;InChI=1S/C18H28N4O16P2/c1-7-11(19-6-23)14(27)12(20-8(2)24)17(35-7)37-40(32,33)38-39(30,31)34-5-9-13(26)15(28)16(36-9)22-4-3-10(25)21-18(22)29/h3-4,6-7,9,11-17,26-28H,5H2,1-2H3,(H,19,23)(H,20,24)(H,30,31)(H,32,33)(H,21,25,29)/t7-,9+,11-,12+,13+,14-,15+,16+,17+/m0/s1
;
F5G InChIKey         InChI                1.03  MNNFOPXYMSSSNV-XQDVVILDSA-N 
F5G SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](NC(C)=O)[C@@H](O)[C@H]1NC=O" 
F5G SMILES           CACTVS               3.385 "C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](NC(C)=O)[CH](O)[CH]1NC=O" 
F5G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H]1[C@@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C)O)NC=O" 
F5G SMILES           "OpenEye OEToolkits" 2.0.6 "CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C)O)NC=O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
F5G "SYSTEMATIC NAME" ACDLabs              12.01 
"(2R,3R,4S,5R,6S)-3-(acetylamino)-5-(formylamino)-4-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 
F5G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
"[(2~{R},3~{R},4~{S},5~{R},6~{S})-3-acetamido-5-formamido-6-methyl-4-oxidanyl-oxan-2-yl] [[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
F5G "Create component" 2018-02-28 RCSB 
F5G "Initial release"  2018-10-17 RCSB 
# 
