data_C4G
# 
_chem_comp.id                                    C4G 
_chem_comp.name                                  "N~5~-[N-(3-aminopropyl)carbamimidoyl]-L-ornithine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H21 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ARG 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-09-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        231.295 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C4G 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6AYN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C4G N   N   N 0 1 N N N Y Y N 3.169  3.607  28.558 -4.248 1.826  0.437  N   C4G 1  
C4G CA  CA  C 0 1 N N S Y N N 3.232  3.909  27.232 -4.244 0.592  -0.359 CA  C4G 2  
C4G C   C   C 0 1 N N N Y N Y 3.829  5.162  27.010 -5.538 -0.150 -0.143 C   C4G 3  
C4G O   O   O 0 1 N N N Y N Y 3.439  5.898  26.059 -6.211 0.082  0.832  O   C4G 4  
C4G CB  CB  C 0 1 N N N N N N 1.855  3.869  26.560 -3.072 -0.291 0.075  CB  C4G 5  
C4G CG  CG  C 0 1 N N N N N N 1.234  2.501  26.841 -1.754 0.411  -0.259 CG  C4G 6  
C4G CD  CD  C 0 1 N N N N N N -0.054 2.317  25.940 -0.582 -0.472 0.176  CD  C4G 7  
C4G NE  NE  N 0 1 N N N N N N -0.685 1.081  26.258 0.680  0.200  -0.144 NE  C4G 8  
C4G CZ  CZ  C 0 1 N N N N N N -1.635 0.626  25.434 1.877  -0.407 0.156  CZ  C4G 9  
C4G NH1 NH1 N 0 1 N N N N N N -1.916 1.406  24.350 1.889  -1.579 0.725  NH1 C4G 10 
C4G NH2 NH2 N 0 1 N N N N N N -2.469 -0.485 25.362 3.061  0.224  -0.144 NH2 C4G 11 
C4G C01 C01 C 0 1 N N N N N N -3.442 -1.171 27.390 5.490  0.484  -0.258 C01 C4G 12 
C4G C02 C02 C 0 1 N N N N N N -2.410 -1.498 26.373 4.337  -0.422 0.176  C02 C4G 13 
C4G C03 C03 C 0 1 N N N N N N -4.781 -1.600 26.942 6.822  -0.191 0.076  C03 C4G 14 
C4G N01 N01 N 0 1 N N N N N N -5.825 -0.821 27.674 7.930  0.679  -0.340 N01 C4G 15 
C4G H   H1  H 0 1 N N N Y Y N 4.087  3.645  28.953 -4.974 2.455  0.126  H1  C4G 16 
C4G H2  H2  H 0 1 N Y N Y Y N 2.578  4.267  29.022 -4.344 1.622  1.421  H2  C4G 17 
C4G HA  H4  H 0 1 N N N Y N N 3.846  3.147  26.729 -4.139 0.841  -1.415 H4  C4G 18 
C4G H6  H6  H 0 1 N N N N N N 1.964  4.014  25.475 -3.128 -0.467 1.149  H6  C4G 19 
C4G H7  H7  H 0 1 N N N N N N 1.214  4.662  26.973 -3.120 -1.244 -0.452 H7  C4G 20 
C4G H8  H8  H 0 1 N N N N N N 0.952  2.436  27.902 -1.698 0.587  -1.333 H8  C4G 21 
C4G H9  H9  H 0 1 N N N N N N 1.963  1.711  26.606 -1.706 1.364  0.269  H9  C4G 22 
C4G H10 H10 H 0 1 N N N N N N 0.238  2.317  24.879 -0.638 -0.648 1.250  H10 C4G 23 
C4G H11 H11 H 0 1 N N N N N N -0.754 3.145  26.128 -0.630 -1.425 -0.352 H11 C4G 24 
C4G H12 H12 H 0 1 N N N N N N -0.425 0.567  27.075 0.671  1.072  -0.568 H12 C4G 25 
C4G H13 H13 H 0 1 N N N N N N -1.353 2.232  24.327 1.053  -2.024 0.937  H13 C4G 26 
C4G H14 H14 H 0 1 N N N N N N -3.112 -0.577 24.602 3.053  1.097  -0.567 H14 C4G 27 
C4G H15 H15 H 0 1 N N N N N N -3.196 -1.685 28.331 5.431  0.659  -1.332 H15 C4G 28 
C4G H16 H16 H 0 1 N N N N N N -3.450 -0.084 27.558 5.423  1.436  0.269  H16 C4G 29 
C4G H17 H17 H 0 1 N N N N N N -2.617 -2.483 25.930 4.396  -0.597 1.250  H17 C4G 30 
C4G H18 H18 H 0 1 N N N N N N -1.413 -1.507 26.838 4.404  -1.374 -0.351 H18 C4G 31 
C4G H19 H19 H 0 1 N N N N N N -4.881 -1.421 25.861 6.882  -0.365 1.150  H19 C4G 32 
C4G H20 H20 H 0 1 N N N N N N -4.911 -2.672 27.150 6.890  -1.142 -0.451 H20 C4G 33 
C4G H21 H21 H 0 1 N N N N N N -6.732 -1.112 27.370 7.854  1.591  0.085  H21 C4G 34 
C4G H22 H22 H 0 1 N N N N N N -5.734 -0.984 28.657 8.821  0.256  -0.130 H22 C4G 35 
C4G OXT O1  O 0 1 N Y N Y N Y 4.824  5.504  27.825 -5.942 -1.067 -1.036 O1  C4G 36 
C4G HXT H3  H 0 1 N Y N Y N Y 5.164  6.354  27.571 -6.779 -1.517 -0.854 H3  C4G 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C4G NH1 CZ  DOUB N N 1  
C4G NH2 CZ  SING N N 2  
C4G NH2 C02 SING N N 3  
C4G CZ  NE  SING N N 4  
C4G CD  NE  SING N N 5  
C4G CD  CG  SING N N 6  
C4G O   C   DOUB N N 7  
C4G C02 C01 SING N N 8  
C4G CB  CG  SING N N 9  
C4G CB  CA  SING N N 10 
C4G C03 C01 SING N N 11 
C4G C03 N01 SING N N 12 
C4G C   CA  SING N N 13 
C4G CA  N   SING N N 14 
C4G N   H   SING N N 15 
C4G N   H2  SING N N 16 
C4G CA  HA  SING N N 17 
C4G CB  H6  SING N N 18 
C4G CB  H7  SING N N 19 
C4G CG  H8  SING N N 20 
C4G CG  H9  SING N N 21 
C4G CD  H10 SING N N 22 
C4G CD  H11 SING N N 23 
C4G NE  H12 SING N N 24 
C4G NH1 H13 SING N N 25 
C4G NH2 H14 SING N N 26 
C4G C01 H15 SING N N 27 
C4G C01 H16 SING N N 28 
C4G C02 H17 SING N N 29 
C4G C02 H18 SING N N 30 
C4G C03 H19 SING N N 31 
C4G C03 H20 SING N N 32 
C4G N01 H21 SING N N 33 
C4G N01 H22 SING N N 34 
C4G C   OXT SING N N 35 
C4G OXT HXT SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C4G SMILES           ACDLabs              12.01 "NC(C(O)=O)CCCN\C(=N)NCCCN"                                                                                   
C4G InChI            InChI                1.03  "InChI=1S/C9H21N5O2/c10-4-2-6-14-9(12)13-5-1-3-7(11)8(15)16/h7H,1-6,10-11H2,(H,15,16)(H3,12,13,14)/t7-/m0/s1" 
C4G InChIKey         InChI                1.03  SXJFFTCQBXWXAY-ZETCQYMHSA-N                                                                                   
C4G SMILES_CANONICAL CACTVS               3.385 "NCCCNC(=N)NCCC[C@H](N)C(O)=O"                                                                                
C4G SMILES           CACTVS               3.385 "NCCCNC(=N)NCCC[CH](N)C(O)=O"                                                                                 
C4G SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C(/NCCC[C@@H](C(=O)O)N)\NCCCN"                                                                         
C4G SMILES           "OpenEye OEToolkits" 2.0.6 "C(CC(C(=O)O)N)CNC(=N)NCCCN"                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C4G "SYSTEMATIC NAME" ACDLabs              12.01 "N~5~-[N-(3-aminopropyl)carbamimidoyl]-L-ornithine"                            
C4G "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-azanyl-5-[[~{N}-(3-azanylpropyl)carbamimidoyl]amino]pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C4G "Create component" 2017-09-13 RCSB 
C4G "Initial release"  2017-12-13 RCSB 
C4G "Modify backbone"  2023-11-03 PDBE 
C4G "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            C4G 
_pdbx_chem_comp_pcm.modified_residue_id                ARG 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
