data_C2G
#

_chem_comp.id                                   C2G
_chem_comp.name                                 "[CYTIDINE-5'-PHOSPHATE] GLYCERYLPHOSPHORIC ACID ESTER"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H21 N3 O13 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "CYTIDINE 5'-DIPHOSPHOGLYCEROL"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-10-29
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       477.255
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    C2G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1N1D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C2G  N1      N1    N  0  1  Y  N  N  21.014  61.175  27.797   0.747   0.546  -5.040  N1      C2G   1  
C2G  C2      C2    C  0  1  Y  N  N  20.007  61.830  28.489   1.298  -0.673  -4.906  C2      C2G   2  
C2G  N3      N3    N  0  1  Y  N  N  20.206  62.999  29.146   2.427  -0.990  -5.538  N3      C2G   3  
C2G  C4      C4    C  0  1  Y  N  N  21.434  63.566  29.137   3.038  -0.108  -6.318  C4      C2G   4  
C2G  C5      C5    C  0  1  Y  N  N  22.492  62.967  28.457   2.490   1.180  -6.474  C5      C2G   5  
C2G  C6      C6    C  0  1  Y  N  N  22.213  61.775  27.809   1.338   1.486  -5.830  C6      C2G   6  
C2G  O2      O2    O  0  1  N  N  N  18.848  61.384  28.549   0.756  -1.502  -4.195  O2      C2G   7  
C2G  N4      N4    N  0  1  N  N  N  21.587  64.706  29.798   4.204  -0.447  -6.965  N4      C2G   8  
C2G  "C1'"   C1*   C  0  1  N  N  R  20.782  59.853  27.150  -0.494   0.866  -4.332  "C1'"   C2G   9  
C2G  "C2'"   C2*   C  0  1  N  N  R  20.825  59.936  25.666  -1.615  -0.114  -4.743  "C2'"   C2G  10  
C2G  "O2'"   O2*   O  0  1  N  N  N  19.623  60.520  25.204  -2.459   0.468  -5.738  "O2'"   C2G  11  
C2G  "C3'"   C3*   C  0  1  N  N  S  21.037  58.503  25.270  -2.404  -0.349  -3.433  "C3'"   C2G  12  
C2G  "C4'"   C4*   C  0  1  N  N  R  21.801  57.909  26.461  -1.667   0.519  -2.390  "C4'"   C2G  13  
C2G  "O4'"   O4*   O  0  1  N  N  N  21.863  58.988  27.405  -0.329   0.668  -2.911  "O4'"   C2G  14  
C2G  "O3'"   O3*   O  0  1  N  N  N  19.854  57.734  25.132  -3.758   0.082  -3.579  "O3'"   C2G  15  
C2G  "C5'"   C5*   C  0  1  N  N  N  23.117  57.600  25.781  -1.635  -0.186  -1.033  "C5'"   C2G  16  
C2G  "O5'"   O5*   O  0  1  N  N  N  24.178  58.492  26.087  -0.888   0.601  -0.104  "O5'"   C2G  17  
C2G  PA      PA    P  0  1  N  N  S  25.400  58.600  24.954  -0.895  -0.196   1.294  PA      C2G  18  
C2G  O1A     O1A   O  0  1  N  N  N  26.688  58.248  25.767  -0.267  -1.523   1.107  O1A     C2G  19  
C2G  O2A     O2A   O  0  1  N  N  N  25.465  60.070  24.426  -2.413  -0.386   1.796  O2A     C2G  20  
C2G  O3A     O3A   O  0  1  N  N  N  25.223  57.448  23.798  -0.066   0.639   2.393  O3A     C2G  21  
C2G  PB      PB    P  0  1  N  N  R  24.806  57.955  22.280  -0.114  -0.212   3.758  PB      C2G  22  
C2G  O1B     O1B   O  0  1  N  N  N  26.077  58.574  21.600   0.500  -1.539   3.534  O1B     C2G  23  
C2G  O2B     O2B   O  0  1  N  N  N  23.605  58.968  22.352  -1.645  -0.402   4.219  O2B     C2G  24  
C2G  O3B     O3B   O  0  1  N  N  N  24.444  56.563  21.462   0.698   0.568   4.907  O3B     C2G  25  
C2G  O1G     O1G   O  0  1  N  N  N  22.696  53.684  18.386   2.000   0.241   9.549  O1G     C2G  26  
C2G  C1G     C1G   C  0  1  N  N  N  22.668  54.920  19.109   1.292  -0.402   8.487  C1G     C2G  27  
C2G  C2G     C2G   C  0  1  N  N  S  24.108  55.221  19.372   1.377   0.456   7.224  C2G     C2G  28  
C2G  O2G     O2G   O  0  1  N  N  N  24.721  54.194  20.176   0.793   1.735   7.477  O2G     C2G  29  
C2G  C3G     C3G   C  0  1  N  N  N  24.328  56.560  20.041   0.619  -0.233   6.087  C3G     C2G  30  
C2G  HC5     HC5   H  0  1  N  N  N  23.500  63.414  28.432   2.975   1.910  -7.106  HC5     C2G  31  
C2G  HC6     HC6   H  0  1  N  N  N  23.014  61.259  27.254   0.896   2.466  -5.938  HC6     C2G  32  
C2G  HN41    1HN4  H  0  0  N  N  N  22.513  65.133  29.791   4.581  -1.333  -6.852  HN41    C2G  33  
C2G  HN42    2HN4  H  0  0  N  N  N  21.280  64.580  30.762   4.646   0.198  -7.537  HN42    C2G  34  
C2G  HC1     HC1   H  0  1  N  N  N  19.796  59.513  27.545  -0.794   1.894  -4.539  HC1     C2G  35  
C2G  HC2     HC2   H  0  1  N  N  N  21.621  60.580  25.226  -1.188  -1.049  -5.105  HC2     C2G  36  
C2G  HO2     HO2   H  0  1  N  N  N  19.650  60.573  24.255  -3.170  -0.165  -5.907  HO2     C2G  37  
C2G  HC3     HC3   H  0  1  N  N  N  21.541  58.476  24.275  -2.368  -1.401  -3.148  HC3     C2G  38  
C2G  HC4     HC4   H  0  1  N  N  N  21.405  57.018  27.002  -2.149   1.493  -2.299  HC4     C2G  39  
C2G  HO3     HO3   H  0  1  N  N  N  19.988  56.827  24.881  -4.165  -0.493  -4.240  HO3     C2G  40  
C2G  HC51    1HC5  H  0  0  N  N  N  23.423  56.550  25.997  -2.653  -0.313  -0.665  HC51    C2G  41  
C2G  HC52    2HC5  H  0  0  N  N  N  22.973  57.538  24.677  -1.163  -1.162  -1.142  HC52    C2G  42  
C2G  H2A     H2A   H  0  1  N  N  N  26.160  60.131  23.781  -2.784   0.500   1.905  H2A     C2G  43  
C2G  H2B     H2B   H  0  1  N  N  N  23.365  59.259  21.480  -2.008   0.484   4.354  H2B     C2G  44  
C2G  H1G     H1G   H  0  1  N  N  N  21.780  53.492  18.218   1.922  -0.330  10.324  H1G     C2G  45  
C2G  H1G1    1H1G  H  0  0  N  N  N  22.115  55.739  18.592   0.247  -0.529   8.771  H1G1    C2G  46  
C2G  H1G2    2H1G  H  0  0  N  N  N  22.030  54.901  20.023   1.737  -1.378   8.294  H1G2    C2G  47  
C2G  H2G     H2G   H  0  1  N  N  N  24.587  55.256  18.366   2.421   0.583   6.940  H2G     C2G  48  
C2G  HOG     HOG   H  0  1  N  N  N  25.636  54.385  20.343  -0.127   1.578   7.725  HOG     C2G  49  
C2G  H3G1    1H3G  H  0  0  N  N  N  23.522  57.266  19.732  -0.424  -0.360   6.371  H3G1    C2G  50  
C2G  H3G2    2H3G  H  0  0  N  N  N  25.220  57.056  19.594   1.064  -1.209   5.894  H3G2    C2G  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C2G  N1     C2      SING  Y  N   1  
C2G  N1     C6      SING  Y  N   2  
C2G  N1     "C1'"   SING  N  N   3  
C2G  C2     N3      SING  Y  N   4  
C2G  C2     O2      DOUB  N  N   5  
C2G  N3     C4      DOUB  Y  N   6  
C2G  C4     C5      SING  Y  N   7  
C2G  C4     N4      SING  N  N   8  
C2G  C5     C6      DOUB  Y  N   9  
C2G  C5     HC5     SING  N  N  10  
C2G  C6     HC6     SING  N  N  11  
C2G  N4     HN41    SING  N  N  12  
C2G  N4     HN42    SING  N  N  13  
C2G  "C1'"  "C2'"   SING  N  N  14  
C2G  "C1'"  "O4'"   SING  N  N  15  
C2G  "C1'"  HC1     SING  N  N  16  
C2G  "C2'"  "O2'"   SING  N  N  17  
C2G  "C2'"  "C3'"   SING  N  N  18  
C2G  "C2'"  HC2     SING  N  N  19  
C2G  "O2'"  HO2     SING  N  N  20  
C2G  "C3'"  "C4'"   SING  N  N  21  
C2G  "C3'"  "O3'"   SING  N  N  22  
C2G  "C3'"  HC3     SING  N  N  23  
C2G  "C4'"  "O4'"   SING  N  N  24  
C2G  "C4'"  "C5'"   SING  N  N  25  
C2G  "C4'"  HC4     SING  N  N  26  
C2G  "O3'"  HO3     SING  N  N  27  
C2G  "C5'"  "O5'"   SING  N  N  28  
C2G  "C5'"  HC51    SING  N  N  29  
C2G  "C5'"  HC52    SING  N  N  30  
C2G  "O5'"  PA      SING  N  N  31  
C2G  PA     O1A     DOUB  N  N  32  
C2G  PA     O2A     SING  N  N  33  
C2G  PA     O3A     SING  N  N  34  
C2G  O2A    H2A     SING  N  N  35  
C2G  O3A    PB      SING  N  N  36  
C2G  PB     O1B     DOUB  N  N  37  
C2G  PB     O2B     SING  N  N  38  
C2G  PB     O3B     SING  N  N  39  
C2G  O2B    H2B     SING  N  N  40  
C2G  O3B    C3G     SING  N  N  41  
C2G  O1G    C1G     SING  N  N  42  
C2G  O1G    H1G     SING  N  N  43  
C2G  C1G    C2G     SING  N  N  44  
C2G  C1G    H1G1    SING  N  N  45  
C2G  C1G    H1G2    SING  N  N  46  
C2G  C2G    O2G     SING  N  N  47  
C2G  C2G    C3G     SING  N  N  48  
C2G  C2G    H2G     SING  N  N  49  
C2G  O2G    HOG     SING  N  N  50  
C2G  C3G    H3G1    SING  N  N  51  
C2G  C3G    H3G2    SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C2G  SMILES            ACDLabs               10.04  "O=P(O)(OCC(O)CO)OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)C(O)C2O"  
C2G  SMILES_CANONICAL  CACTVS                3.341  "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@@H](O)CO)[C@@H](O)[C@H]2O"  
C2G  SMILES            CACTVS                3.341  "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH](O)CO)[CH](O)[CH]2O"  
C2G  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@](=O)(O)O[P@](=O)(O)OC[C@H](CO)O)O)O"  
C2G  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC(CO)O)O)O"  
C2G  InChI             InChI                 1.03   "InChI=1S/C12H21N3O13P2/c13-8-1-2-15(12(20)14-8)11-10(19)9(18)7(27-11)5-26-30(23,24)28-29(21,22)25-4-6(17)3-16/h1-2,6-7,9-11,16-19H,3-5H2,(H,21,22)(H,23,24)(H2,13,14,20)/t6-,7+,9+,10+,11+/m0/s1"  
C2G  InChIKey          InChI                 1.03   HHPOUCCVONEPRK-CNYIRLTGSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
C2G  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-O-[(S)-{[(R)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine"  
C2G  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2S)-2,3-dihydroxypropoxy]-hydroxy-phosphoryl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C2G  "Create component"   2002-10-29  RCSB  
C2G  "Modify descriptor"  2011-06-04  RCSB  
C2G  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     C2G
_pdbx_chem_comp_synonyms.name        "CYTIDINE 5'-DIPHOSPHOGLYCEROL"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
