data_8GG
#

_chem_comp.id                                   8GG
_chem_comp.name                                 5-Se-methyl-5-seleno-beta-D-ribofuranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O4 Se"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5-Se-methyl-5-seleno-beta-D-ribose; 5-Se-methyl-5-seleno-D-ribose; 5-Se-methyl-5-seleno-ribose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-02-04
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       227.117
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8GG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5ULB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  8GG  5-Se-methyl-5-seleno-beta-D-ribose  PDB  ?  
2  8GG  5-Se-methyl-5-seleno-D-ribose       PDB  ?  
3  8GG  5-Se-methyl-5-seleno-ribose         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8GG  O4   "O4'"  O   0  1  N  N  N  40.007  31.416   9.730   0.790   1.027   0.032  O4   8GG   1  
8GG  C5   "C5'"  C   0  1  N  N  N  41.379  32.818   8.285  -0.830  -0.723   0.562  C5   8GG   2  
8GG  C4   "C4'"  C   0  1  N  N  S  40.699  31.464   8.525   0.473  -0.370  -0.157  C4   8GG   3  
8GG  C3   "C3'"  C   0  1  N  N  S  39.625  31.121   7.421   1.660  -1.132   0.474  C3   8GG   4  
8GG  O3   "O3'"  O   0  1  N  N  N  40.219  30.376   6.390   1.974  -2.294  -0.296  O3   8GG   5  
8GG  C2   "C2'"  C   0  1  N  N  R  38.626  30.270   8.308   2.826  -0.119   0.425  C2   8GG   6  
8GG  O2   "O2'"  O   0  1  N  N  N  38.423  28.935   7.815   3.895  -0.625  -0.377  O2   8GG   7  
8GG  C1   "C1'"  C   0  1  N  N  R  39.312  30.190   9.570   2.206   1.135  -0.230  C1   8GG   8  
8GG  O1   "O1'"  O   0  1  N  Y  N  38.369  30.193  10.610   2.733   2.321   0.369  O1   8GG   9  
8GG  SE   SE     SE  0  1  N  N  N  42.651  33.120   9.640  -2.324   0.212  -0.295  SE   8GG  10  
8GG  CS   CS     C   0  1  N  N  N  43.542  34.499   8.772  -3.829  -0.405   0.799  CS   8GG  11  
8GG  H51  H1     H   0  1  N  N  N  41.880  32.810   7.306  -0.995  -1.799   0.507  H51  8GG  12  
8GG  H52  H2     H   0  1  N  N  N  40.624  33.618   8.304  -0.762  -0.419   1.607  H52  8GG  13  
8GG  H4   H3     H   0  1  N  N  N  41.471  30.681   8.497   0.394  -0.600  -1.220  H4   8GG  14  
8GG  H3   H4     H   0  1  N  N  N  39.134  32.038   7.064   1.434  -1.405   1.504  H3   8GG  15  
8GG  HO3  H5     H   0  1  N  Y  N  40.805  30.934   5.893   2.749  -2.778   0.021  HO3  8GG  16  
8GG  H2   H6     H   0  1  N  N  N  37.673  30.811   8.404   3.176   0.109   1.431  H2   8GG  17  
8GG  HO2  H7     H   0  1  N  Y  N  37.818  28.475   8.385   4.654  -0.029  -0.442  HO2  8GG  18  
8GG  H1   H8     H   0  1  N  N  N  39.985  29.321   9.616   2.394   1.135  -1.303  H1   8GG  19  
8GG  HO1  H9     H   0  1  N  Y  N  38.818  30.140  11.445   2.379   3.140  -0.003  HO1  8GG  20  
8GG  H10  H10    H   0  1  N  N  N  44.369  34.856   9.403  -3.902  -1.491   0.736  H10  8GG  21  
8GG  H11  H11    H   0  1  N  N  N  43.943  34.132   7.816  -3.669  -0.111   1.836  H11  8GG  22  
8GG  H12  H12    H   0  1  N  N  N  42.842  35.326   8.583  -4.752   0.043   0.432  H12  8GG  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8GG  O3  C3   SING  N  N   1  
8GG  C3  C2   SING  N  N   2  
8GG  C3  C4   SING  N  N   3  
8GG  O2  C2   SING  N  N   4  
8GG  C5  C4   SING  N  N   5  
8GG  C5  SE   SING  N  N   6  
8GG  C2  C1   SING  N  N   7  
8GG  C4  O4   SING  N  N   8  
8GG  CS  SE   SING  N  N   9  
8GG  C1  O4   SING  N  N  10  
8GG  C1  O1   SING  N  N  11  
8GG  C5  H51  SING  N  N  12  
8GG  C5  H52  SING  N  N  13  
8GG  C4  H4   SING  N  N  14  
8GG  C3  H3   SING  N  N  15  
8GG  O3  HO3  SING  N  N  16  
8GG  C2  H2   SING  N  N  17  
8GG  O2  HO2  SING  N  N  18  
8GG  C1  H1   SING  N  N  19  
8GG  O1  HO1  SING  N  N  20  
8GG  CS  H10  SING  N  N  21  
8GG  CS  H11  SING  N  N  22  
8GG  CS  H12  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8GG  SMILES            ACDLabs               12.01  "O1C(C[Se]C)C(C(C1O)O)O"  
8GG  InChI             InChI                 1.03   "InChI=1S/C6H12O4Se/c1-11-2-3-4(7)5(8)6(9)10-3/h3-9H,2H2,1H3/t3-,4-,5-,6-/m1/s1"  
8GG  InChIKey          InChI                 1.03   UFNQFLPLDXICBS-KVTDHHQDSA-N  
8GG  SMILES_CANONICAL  CACTVS                3.385  "C[Se]C[C@H]1O[C@@H](O)[C@H](O)[C@@H]1O"  
8GG  SMILES            CACTVS                3.385  "C[Se]C[CH]1O[CH](O)[CH](O)[CH]1O"  
8GG  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[Se]C[C@@H]1[C@H]([C@H]([C@@H](O1)O)O)O"  
8GG  SMILES            "OpenEye OEToolkits"  2.0.6  "C[Se]CC1C(C(C(O1)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8GG  "SYSTEMATIC NAME"  ACDLabs               12.01  5-Se-methyl-5-seleno-beta-D-ribofuranose  
8GG  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{R},3~{R},4~{S},5~{S})-5-(methylselanylmethyl)oxolane-2,3,4-triol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
8GG  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
8GG  "CARBOHYDRATE RING"                    furanose  PDB  ?  
8GG  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
8GG  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8GG  "Create component"          2017-02-04  RCSB  
8GG  "Initial release"           2018-09-12  RCSB  
8GG  "Other modification"        2020-07-03  RCSB  
8GG  "Modify synonyms"           2020-07-17  RCSB  
8GG  "Modify linking type"       2020-07-17  RCSB  
8GG  "Modify atom id"            2020-07-17  RCSB  
8GG  "Modify component atom id"  2020-07-17  RCSB  
8GG  "Modify leaving atom flag"  2020-07-17  RCSB  
##
