data_2DG
# 
_chem_comp.id                                    2DG 
_chem_comp.name                                  2-deoxy-alpha-D-galactopyranose 
_chem_comp.type                                  "D-saccharide, alpha linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C6 H12 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-deoxy-alpha-D-lyxo-hexopyranose; 2-deoxy-alpha-D-galactose; 2-deoxy-D-galactose; 2-deoxy-galactose" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2001-10-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        164.156 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2DG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1JZ3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 2DG 2-deoxy-alpha-D-lyxo-hexopyranose PDB ? 
2 2DG 2-deoxy-alpha-D-galactose         PDB ? 
3 2DG 2-deoxy-D-galactose               PDB ? 
4 2DG 2-deoxy-galactose                 PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2DG C1  C1  C 0 1 N N S N N N -12.051 20.328 -25.776 -1.615 0.599  -0.265 C1  2DG 1  
2DG C2  C2  C 0 1 N N N N N N -12.014 21.658 -25.021 -0.872 0.612  -1.603 C2  2DG 2  
2DG C3  C3  C 0 1 N N R N N N -13.147 22.604 -25.439 0.153  -0.526 -1.616 C3  2DG 3  
2DG C4  C4  C 0 1 N N R N N N -13.187 22.800 -26.946 1.042  -0.397 -0.374 C4  2DG 4  
2DG C5  C5  C 0 1 N N R N N N -13.246 21.396 -27.629 0.154  -0.335 0.870  C5  2DG 5  
2DG C6  C6  C 0 1 N N N N N N -13.054 21.578 -29.153 1.034  -0.241 2.119  C6  2DG 6  
2DG O1  O1  O 0 1 N Y N N N N -13.163 19.474 -25.337 -2.260 -0.664 -0.094 O1  2DG 7  
2DG O3  O3  O 0 1 N N N N N N -13.009 23.844 -24.732 0.955  -0.436 -2.795 O3  2DG 8  
2DG O4  O4  O 0 1 N N N N N N -12.018 23.509 -27.343 1.824  0.795  -0.468 O4  2DG 9  
2DG O5  O5  O 0 1 N N N N N N -12.166 20.525 -27.225 -0.693 0.809  0.801  O5  2DG 10 
2DG O6  O6  O 0 1 N N N N N N -14.115 22.428 -29.685 0.206  -0.187 3.282  O6  2DG 11 
2DG H1  H1  H 0 1 N N N N N N -11.083 19.824 -25.542 -2.363 1.391  -0.259 H1  2DG 12 
2DG H2  H21 H 0 1 N N N N N N -12.015 21.493 -23.918 -1.583 0.471  -2.417 H2  2DG 13 
2DG H22 H22 H 0 1 N N N N N N -11.019 22.151 -25.127 -0.359 1.566  -1.726 H22 2DG 14 
2DG H3  H3  H 0 1 N N N N N N -14.126 22.147 -25.165 -0.364 -1.485 -1.598 H3  2DG 15 
2DG H4  H4  H 0 1 N N N N N N -14.084 23.387 -27.251 1.702  -1.262 -0.306 H4  2DG 16 
2DG H5  H5  H 0 1 N N N N N N -14.226 20.950 -27.339 -0.456 -1.236 0.925  H5  2DG 17 
2DG H61 H61 H 0 1 N N N N N N -12.039 21.965 -29.405 1.646  0.658  2.065  H61 2DG 18 
2DG H62 H62 H 0 1 N N N N N N -12.990 20.601 -29.687 1.681  -1.117 2.174  H62 2DG 19 
2DG HO1 HO1 H 0 1 N Y N N N N -13.186 18.648 -25.805 -2.720 -0.630 0.755  HO1 2DG 20 
2DG HO3 HO3 H 0 1 N Y N N N N -13.710 24.429 -24.990 0.353  -0.510 -3.548 HO3 2DG 21 
2DG HO4 HO4 H 0 1 N Y N N N N -12.043 23.631 -28.284 2.362  0.714  -1.267 HO4 2DG 22 
2DG HO6 HO6 H 0 1 N N N N N N -13.997 22.539 -30.621 0.799  -0.128 4.044  HO6 2DG 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2DG C1 C2  SING N N 1  
2DG C1 O1  SING N N 2  
2DG C1 O5  SING N N 3  
2DG C1 H1  SING N N 4  
2DG C2 C3  SING N N 5  
2DG C2 H2  SING N N 6  
2DG C2 H22 SING N N 7  
2DG C3 C4  SING N N 8  
2DG C3 O3  SING N N 9  
2DG C3 H3  SING N N 10 
2DG C4 C5  SING N N 11 
2DG C4 O4  SING N N 12 
2DG C4 H4  SING N N 13 
2DG C5 C6  SING N N 14 
2DG C5 O5  SING N N 15 
2DG C5 H5  SING N N 16 
2DG C6 O6  SING N N 17 
2DG C6 H61 SING N N 18 
2DG C6 H62 SING N N 19 
2DG O1 HO1 SING N N 20 
2DG O3 HO3 SING N N 21 
2DG O4 HO4 SING N N 22 
2DG O6 HO6 SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2DG SMILES           ACDLabs              10.04 "OC1C(OC(O)CC1O)CO"                                                           
2DG SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1O[C@H](O)C[C@@H](O)[C@H]1O"                                          
2DG SMILES           CACTVS               3.341 "OC[CH]1O[CH](O)C[CH](O)[CH]1O"                                               
2DG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@H]([C@H](O[C@@H]1O)CO)O)O"                                        
2DG SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(C(OC1O)CO)O)O"                                                         
2DG InChI            InChI                1.03  "InChI=1S/C6H12O5/c7-2-4-6(10)3(8)1-5(9)11-4/h3-10H,1-2H2/t3-,4-,5+,6-/m1/s1" 
2DG InChIKey         InChI                1.03  PMMURAAUARKVCB-ARQDHWQXSA-N                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2DG "SYSTEMATIC NAME" ACDLabs              10.04 2-deoxy-alpha-D-lyxo-hexopyranose                  
2DG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,4R,5R,6R)-6-(hydroxymethyl)oxane-2,4,5-triol" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
2DG "CARBOHYDRATE ISOMER"                 D        PDB ? 
2DG "CARBOHYDRATE RING"                   pyranose PDB ? 
2DG "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
2DG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2DG "Create component"         2001-10-02 RCSB 
2DG "Modify descriptor"        2011-06-04 RCSB 
2DG "Other modification"       2020-07-03 RCSB 
2DG "Modify name"              2020-07-17 RCSB 
2DG "Modify synonyms"          2020-07-17 RCSB 
2DG "Modify linking type"      2020-07-17 RCSB 
2DG "Modify atom id"           2020-07-17 RCSB 
2DG "Modify component atom id" 2020-07-17 RCSB 
2DG "Modify leaving atom flag" 2020-07-17 RCSB 
2DG "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            2DG 
_pdbx_chem_comp_pcm.modified_residue_id                GLU 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
