data_Z6F
# 
_chem_comp.id                                    Z6F 
_chem_comp.name                                  "(3S,5R)-N-(4-chloro-3-fluorophenyl)-5-(hydroxymethyl)-1-(4-methylpiperazine-1-carbonyl)piperidine-3-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H26 Cl F N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-07 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        412.886 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Z6F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GDJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Z6F C01 C1  C  0 1 N N N N N N -1.710 13.316 -7.777  -7.896 1.937  1.358  C01 Z6F 1  
Z6F C03 C2  C  0 1 N N N N N N 0.082  13.662 -8.991  -5.871 0.610  1.361  C03 Z6F 2  
Z6F C04 C3  C  0 1 N N N N N N 0.596  14.072 -10.374 -4.891 -0.143 0.454  C04 Z6F 3  
Z6F C06 C4  C  0 1 N N N N N N 0.039  16.440 -11.150 -2.963 0.896  -0.649 C06 Z6F 4  
Z6F C08 C5  C  0 1 N N N N N N -2.270 17.393 -12.197 -0.742 0.257  0.160  C08 Z6F 5  
Z6F C09 C6  C  0 1 N N S N N N -2.094 17.787 -13.688 0.105  -0.842 -0.489 C09 Z6F 6  
Z6F O11 O1  O  0 1 N N N N N N -4.365 17.317 -14.364 2.160  -1.497 0.470  O11 Z6F 7  
Z6F C10 C7  C  0 1 N N N N N N -3.235 17.449 -14.695 1.555  -0.636 -0.133 C10 Z6F 8  
Z6F C13 C8  C  0 1 Y N N N N N -3.556 17.055 -17.253 3.554  0.649  -0.264 C13 Z6F 9  
Z6F C14 C9  C  0 1 Y N N N N N -4.943 17.125 -17.263 4.369  -0.474 -0.207 C14 Z6F 10 
Z6F C15 C10 C  0 1 Y N N N N N -5.620 16.855 -18.449 5.727  -0.329 0.011  C15 Z6F 11 
Z6F C17 C11 C  0 1 Y N N N N N -4.917 16.527 -19.596 6.273  0.934  0.173  C17 Z6F 12 
Z6F C19 C12 C  0 1 Y N N N N N -3.531 16.462 -19.588 5.461  2.053  0.116  C19 Z6F 13 
Z6F C20 C13 C  0 1 Y N N N N N -2.853 16.731 -18.412 4.105  1.913  -0.108 C20 Z6F 14 
Z6F C21 C14 C  0 1 N N N N N N -1.839 19.229 -13.784 -0.358 -2.207 0.026  C21 Z6F 15 
Z6F C22 C15 C  0 1 N N R N N N -0.466 19.423 -13.274 -1.821 -2.432 -0.364 C22 Z6F 16 
Z6F C23 C16 C  0 1 N N N N N N -0.136 20.931 -13.248 -2.273 -3.810 0.122  C23 Z6F 17 
Z6F C25 C17 C  0 1 N N N N N N -0.330 18.870 -11.845 -2.690 -1.350 0.285  C25 Z6F 18 
Z6F C27 C18 C  0 1 N N N N N N -1.513 14.351 -11.163 -5.203 1.683  -1.261 C27 Z6F 19 
Z6F C28 C19 C  0 1 N N N N N N -2.110 14.128 -9.771  -6.170 2.364  -0.286 C28 Z6F 20 
Z6F F16 F1  F  0 1 N N N N N N -6.985 16.900 -18.521 6.522  -1.421 0.068  F16 Z6F 21 
Z6F N02 N1  N  0 1 N N N N N N -1.283 13.335 -8.962  -6.837 1.342  0.531  N02 Z6F 22 
Z6F N05 N2  N  0 1 N N N N N N -0.292 15.017 -10.943 -4.299 0.816  -0.491 N05 Z6F 23 
Z6F N07 N3  N  0 1 N N N N N N -0.852 17.477 -11.689 -2.161 -0.031 -0.088 N07 Z6F 24 
Z6F N12 N4  N  0 1 N N N N N N -2.770 17.341 -16.066 2.179  0.506  -0.485 N12 Z6F 25 
Z6F O24 O2  O  0 1 N N N N N N 0.213  21.250 -11.935 -3.600 -4.067 -0.342 O24 Z6F 26 
Z6F O26 O3  O  0 1 N N N N N N 1.130  16.805 -10.856 -2.480 1.806  -1.296 O26 Z6F 27 
Z6F CL1 CL1 CL 0 0 N N N N N N -5.835 16.187 -21.086 7.977  1.113  0.454  CL1 Z6F 28 
Z6F H1  H1  H  0 1 N N N N N N -1.050 12.690 -7.159  -7.452 2.631  2.072  H1  Z6F 29 
Z6F H2  H2  H  0 1 N N N N N N -1.725 14.340 -7.376  -8.597 2.473  0.719  H2  Z6F 30 
Z6F H3  H3  H  0 1 N N N N N N -2.729 12.901 -7.761  -8.423 1.149  1.895  H3  Z6F 31 
Z6F H4  H4  H  0 1 N N N N N N 0.655  12.785 -8.655  -6.400 -0.102 1.994  H4  Z6F 32 
Z6F H5  H5  H  0 1 N N N N N N 0.252  14.498 -8.297  -5.321 1.314  1.986  H5  Z6F 33 
Z6F H6  H6  H  0 1 N N N N N N 0.653  13.185 -11.022 -4.105 -0.594 1.059  H6  Z6F 34 
Z6F H7  H7  H  0 1 N N N N N N 1.596  14.520 -10.276 -5.423 -0.921 -0.093 H7  Z6F 35 
Z6F H8  H8  H  0 1 N N N N N N -2.927 18.100 -11.670 -0.555 0.277  1.233  H8  Z6F 36 
Z6F H9  H9  H  0 1 N N N N N N -2.672 16.374 -12.096 -0.484 1.223  -0.274 H9  Z6F 37 
Z6F H10 H10 H  0 1 N N N N N N -1.195 17.265 -14.047 -0.013 -0.802 -1.571 H10 Z6F 38 
Z6F H11 H11 H  0 1 N N N N N N -5.487 17.384 -16.367 3.944  -1.458 -0.333 H11 Z6F 39 
Z6F H12 H12 H  0 1 N N N N N N -2.989 16.205 -20.486 5.889  3.037  0.243  H12 Z6F 40 
Z6F H13 H13 H  0 1 N N N N N N -1.774 16.690 -18.392 3.472  2.788  -0.152 H13 Z6F 41 
Z6F H14 H14 H  0 1 N N N N N N -1.911 19.563 -14.829 0.260  -2.990 -0.415 H14 Z6F 42 
Z6F H15 H15 H  0 1 N N N N N N -2.560 19.788 -13.170 -0.262 -2.238 1.111  H15 Z6F 43 
Z6F H16 H16 H  0 1 N N N N N N 0.253  18.909 -13.929 -1.921 -2.377 -1.448 H16 Z6F 44 
Z6F H17 H17 H  0 1 N N N N N N 0.704  21.146 -13.925 -1.598 -4.572 -0.268 H17 Z6F 45 
Z6F H18 H18 H  0 1 N N N N N N -1.015 21.515 -13.558 -2.258 -3.834 1.212  H18 Z6F 46 
Z6F H19 H19 H  0 1 N N N N N N 0.735  18.875 -11.570 -3.717 -1.446 -0.068 H19 Z6F 47 
Z6F H20 H20 H  0 1 N N N N N N -0.888 19.529 -11.163 -2.662 -1.461 1.369  H20 Z6F 48 
Z6F H21 H21 H  0 1 N N N N N N -2.185 14.971 -11.775 -5.766 1.083  -1.976 H21 Z6F 49 
Z6F H22 H22 H  0 1 N N N N N N -1.341 13.388 -11.667 -4.623 2.440  -1.789 H22 Z6F 50 
Z6F H23 H23 H  0 1 N N N N N N -2.250 15.105 -9.285  -5.616 3.044  0.361  H23 Z6F 51 
Z6F H24 H24 H  0 1 N N N N N N -3.084 13.629 -9.879  -6.918 2.925  -0.848 H24 Z6F 52 
Z6F H26 H26 H  0 1 N N N N N N -1.790 17.480 -16.210 1.676  1.228  -0.892 H26 Z6F 53 
Z6F H27 H27 H  0 1 N N N N N N 0.424  22.175 -11.879 -3.952 -4.926 -0.071 H27 Z6F 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Z6F CL1 C17 SING N N 1  
Z6F C17 C19 DOUB Y N 2  
Z6F C17 C15 SING Y N 3  
Z6F C19 C20 SING Y N 4  
Z6F F16 C15 SING N N 5  
Z6F C15 C14 DOUB Y N 6  
Z6F C20 C13 DOUB Y N 7  
Z6F C14 C13 SING Y N 8  
Z6F C13 N12 SING N N 9  
Z6F N12 C10 SING N N 10 
Z6F C10 O11 DOUB N N 11 
Z6F C10 C09 SING N N 12 
Z6F C21 C09 SING N N 13 
Z6F C21 C22 SING N N 14 
Z6F C09 C08 SING N N 15 
Z6F C22 C23 SING N N 16 
Z6F C22 C25 SING N N 17 
Z6F C23 O24 SING N N 18 
Z6F C08 N07 SING N N 19 
Z6F C25 N07 SING N N 20 
Z6F N07 C06 SING N N 21 
Z6F C27 N05 SING N N 22 
Z6F C27 C28 SING N N 23 
Z6F C06 N05 SING N N 24 
Z6F C06 O26 DOUB N N 25 
Z6F N05 C04 SING N N 26 
Z6F C04 C03 SING N N 27 
Z6F C28 N02 SING N N 28 
Z6F C03 N02 SING N N 29 
Z6F N02 C01 SING N N 30 
Z6F C01 H1  SING N N 31 
Z6F C01 H2  SING N N 32 
Z6F C01 H3  SING N N 33 
Z6F C03 H4  SING N N 34 
Z6F C03 H5  SING N N 35 
Z6F C04 H6  SING N N 36 
Z6F C04 H7  SING N N 37 
Z6F C08 H8  SING N N 38 
Z6F C08 H9  SING N N 39 
Z6F C09 H10 SING N N 40 
Z6F C14 H11 SING N N 41 
Z6F C19 H12 SING N N 42 
Z6F C20 H13 SING N N 43 
Z6F C21 H14 SING N N 44 
Z6F C21 H15 SING N N 45 
Z6F C22 H16 SING N N 46 
Z6F C23 H17 SING N N 47 
Z6F C23 H18 SING N N 48 
Z6F C25 H19 SING N N 49 
Z6F C25 H20 SING N N 50 
Z6F C27 H21 SING N N 51 
Z6F C27 H22 SING N N 52 
Z6F C28 H23 SING N N 53 
Z6F C28 H24 SING N N 54 
Z6F N12 H26 SING N N 55 
Z6F O24 H27 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Z6F SMILES           ACDLabs              12.01 "O=C(N1CCN(C)CC1)N1CC(CC(CO)C1)C(=O)Nc1ccc(Cl)c(F)c1"                                                                                                                   
Z6F InChI            InChI                1.06  "InChI=1S/C19H26ClFN4O3/c1-23-4-6-24(7-5-23)19(28)25-10-13(12-26)8-14(11-25)18(27)22-15-2-3-16(20)17(21)9-15/h2-3,9,13-14,26H,4-8,10-12H2,1H3,(H,22,27)/t13-,14+/m1/s1" 
Z6F InChIKey         InChI                1.06  YJQIDERPUXKPOK-KGLIPLIRSA-N                                                                                                                                             
Z6F SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)C(=O)N2C[C@H](CO)C[C@@H](C2)C(=O)Nc3ccc(Cl)c(F)c3"                                                                                                          
Z6F SMILES           CACTVS               3.385 "CN1CCN(CC1)C(=O)N2C[CH](CO)C[CH](C2)C(=O)Nc3ccc(Cl)c(F)c3"                                                                                                             
Z6F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)N2C[C@@H](C[C@@H](C2)C(=O)Nc3ccc(c(c3)F)Cl)CO"                                                                                                         
Z6F SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C(=O)N2CC(CC(C2)C(=O)Nc3ccc(c(c3)F)Cl)CO"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Z6F "SYSTEMATIC NAME" ACDLabs              12.01 "(3S,5R)-N-(4-chloro-3-fluorophenyl)-5-(hydroxymethyl)-1-(4-methylpiperazine-1-carbonyl)piperidine-3-carboxamide"                   
Z6F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},5~{R})-~{N}-(4-chloranyl-3-fluoranyl-phenyl)-5-(hydroxymethyl)-1-(4-methylpiperazin-1-yl)carbonyl-piperidine-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Z6F "Create component" 2023-03-07 RCSB 
Z6F "Initial release"  2024-03-20 RCSB 
# 
