data_YKF
# 
_chem_comp.id                                    YKF 
_chem_comp.name                                  "methyl 2-formyl-2-[3-methyl-4-(3-phenoxybenzamido)phenyl]hydrazine-1-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H21 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        419.430 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YKF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G49 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YKF C1  C1  C 0 1 N N N N N N -8.472 13.038 -16.425 6.461  -2.922 -2.028 C1  YKF 1  
YKF C10 C2  C 0 1 Y N N N N N -0.763 11.870 -12.269 -2.765 2.591  0.024  C10 YKF 2  
YKF C11 C3  C 0 1 Y N N N N N 0.259  12.797 -12.158 -4.053 3.047  -0.166 C11 YKF 3  
YKF C12 C4  C 0 1 Y N N N N N 1.265  12.850 -13.103 -5.032 2.193  -0.639 C12 YKF 4  
YKF C13 C5  C 0 1 Y N N N N N 1.192  12.024 -14.202 -4.725 0.870  -0.927 C13 YKF 5  
YKF C14 C6  C 0 1 Y N N N N N 1.678  12.097 -16.529 -6.181 -0.908 -0.544 C14 YKF 6  
YKF C15 C7  C 0 1 Y N N N N N 2.532  11.755 -17.555 -7.086 -1.853 -1.004 C15 YKF 7  
YKF C16 C8  C 0 1 Y N N N N N 2.080  11.815 -18.862 -7.583 -2.810 -0.140 C16 YKF 8  
YKF C17 C9  C 0 1 Y N N N N N 0.825  12.288 -19.147 -7.178 -2.827 1.182  C17 YKF 9  
YKF C18 C10 C 0 1 Y N N N N N -0.005 12.683 -18.127 -6.276 -1.886 1.643  C18 YKF 10 
YKF C19 C11 C 0 1 Y N N N N N 0.424  12.621 -16.806 -5.773 -0.930 0.782  C19 YKF 11 
YKF C2  C12 C 0 1 N N N N N N -7.877 14.608 -14.764 6.488  -0.732 -1.080 C2  YKF 12 
YKF C20 C13 C 0 1 Y N N N N N 0.219  11.049 -14.290 -3.435 0.401  -0.741 C20 YKF 13 
YKF C21 C14 C 0 1 Y N N N N N -4.708 12.049 -12.890 2.259  2.064  0.337  C21 YKF 14 
YKF C22 C15 C 0 1 N N N N N N -5.167 11.367 -11.629 1.968  3.516  0.056  C22 YKF 15 
YKF C23 C16 C 0 1 Y N N N N N -5.282 13.230 -13.274 3.565  1.629  0.441  C23 YKF 16 
YKF C3  C17 C 0 1 N N N N N N -4.909 16.074 -15.488 5.534  -0.903 1.859  C3  YKF 17 
YKF C4  C18 C 0 1 Y N N N N N -4.925 13.845 -14.458 3.832  0.291  0.700  C4  YKF 18 
YKF C5  C19 C 0 1 Y N N N N N -3.879 13.343 -15.214 2.786  -0.609 0.853  C5  YKF 19 
YKF C6  C20 C 0 1 Y N N N N N -3.276 12.175 -14.826 1.480  -0.174 0.749  C6  YKF 20 
YKF C7  C21 C 0 1 Y N N N N N -3.707 11.512 -13.686 1.212  1.165  0.495  C7  YKF 21 
YKF C8  C22 C 0 1 N N N N N N -1.804 9.909  -13.527 -1.066 0.771  -0.067 C8  YKF 22 
YKF C9  C23 C 0 1 Y N N N N N -0.766 10.960 -13.322 -2.445 1.264  -0.269 C9  YKF 23 
YKF N1  N1  N 0 1 N N N N N N -6.811 15.323 -14.275 6.090  0.191  -0.182 N1  YKF 24 
YKF N2  N2  N 0 1 N N N N N N -5.545 15.069 -14.800 5.157  -0.150 0.806  N2  YKF 25 
YKF N3  N3  N 0 1 N N N N N N -3.071 10.294 -13.288 -0.112 1.607  0.389  N3  YKF 26 
YKF O1  O1  O 0 1 N N N N N N -7.472 13.879 -15.812 5.988  -1.981 -1.028 O1  YKF 27 
YKF O2  O2  O 0 1 N N N N N N -8.996 14.616 -14.317 7.297  -0.437 -1.937 O2  YKF 28 
YKF O3  O3  O 0 1 N N N N N N -3.802 16.048 -15.996 4.709  -1.271 2.668  O3  YKF 29 
YKF O4  O4  O 0 1 N N N N N N -1.459 8.723  -13.524 -0.793 -0.388 -0.313 O4  YKF 30 
YKF O5  O5  O 0 1 N N N N N N 2.166  12.047 -15.197 -5.691 0.034  -1.391 O5  YKF 31 
YKF H3  H1  H 0 1 N N N N N N -8.025 12.492 -17.269 5.980  -3.888 -1.873 H3  YKF 32 
YKF H2  H2  H 0 1 N N N N N N -8.852 12.320 -15.683 6.216  -2.550 -3.022 H2  YKF 33 
YKF H1  H3  H 0 1 N N N N N N -9.301 13.661 -16.790 7.541  -3.035 -1.938 H1  YKF 34 
YKF H9  H4  H 0 1 N N N N N N -1.558 11.853 -11.538 -2.003 3.261  0.394  H9  YKF 35 
YKF H10 H5  H 0 1 N N N N N N 0.270  13.485 -11.325 -4.298 4.076  0.057  H10 YKF 36 
YKF H11 H6  H 0 1 N N N N N N 2.096  13.529 -12.982 -6.038 2.556  -0.785 H11 YKF 37 
YKF H12 H7  H 0 1 N N N N N N 3.544  11.443 -17.342 -7.403 -1.841 -2.037 H12 YKF 38 
YKF H13 H8  H 0 1 N N N N N N 2.722  11.486 -19.665 -8.288 -3.546 -0.498 H13 YKF 39 
YKF H14 H9  H 0 1 N N N N N N 0.490  12.350 -20.172 -7.568 -3.576 1.855  H14 YKF 40 
YKF H15 H10 H 0 1 N N N N N N -0.998 13.044 -18.352 -5.962 -1.901 2.676  H15 YKF 41 
YKF H16 H11 H 0 1 N N N N N N -0.210 12.976 -16.007 -5.068 -0.195 1.143  H16 YKF 42 
YKF H17 H12 H 0 1 N N N N N N 0.226  10.354 -15.116 -3.195 -0.628 -0.964 H17 YKF 43 
YKF H19 H13 H 0 1 N N N N N N -4.567 11.724 -10.779 1.915  3.674  -1.022 H19 YKF 44 
YKF H20 H14 H 0 1 N N N N N N -6.227 11.599 -11.452 1.017  3.791  0.511  H20 YKF 45 
YKF H18 H15 H 0 1 N N N N N N -5.043 10.279 -11.735 2.763  4.133  0.474  H18 YKF 46 
YKF H21 H16 H 0 1 N N N N N N -6.027 13.689 -12.641 4.378  2.329  0.321  H21 YKF 47 
YKF H5  H17 H 0 1 N N N N N N -5.457 16.999 -15.591 6.571  -1.178 1.982  H5  YKF 48 
YKF H6  H18 H 0 1 N N N N N N -3.543 13.865 -16.098 2.994  -1.650 1.051  H6  YKF 49 
YKF H7  H19 H 0 1 N N N N N N -2.463 11.769 -15.410 0.666  -0.874 0.868  H7  YKF 50 
YKF H4  H20 H 0 1 N N N N N N -6.940 16.009 -13.559 6.450  1.090  -0.219 H4  YKF 51 
YKF H8  H21 H 0 1 N N N N N N -3.636 9.652  -12.770 -0.343 2.513  0.644  H8  YKF 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YKF C17 C16 DOUB Y N 1  
YKF C17 C18 SING Y N 2  
YKF C16 C15 SING Y N 3  
YKF C18 C19 DOUB Y N 4  
YKF C15 C14 DOUB Y N 5  
YKF C19 C14 SING Y N 6  
YKF C14 O5  SING N N 7  
YKF C1  O1  SING N N 8  
YKF O3  C3  DOUB N N 9  
YKF O1  C2  SING N N 10 
YKF C3  N2  SING N N 11 
YKF C5  C6  DOUB Y N 12 
YKF C5  C4  SING Y N 13 
YKF O5  C13 SING N N 14 
YKF C6  C7  SING Y N 15 
YKF N2  C4  SING N N 16 
YKF N2  N1  SING N N 17 
YKF C2  O2  DOUB N N 18 
YKF C2  N1  SING N N 19 
YKF C4  C23 DOUB Y N 20 
YKF C20 C13 DOUB Y N 21 
YKF C20 C9  SING Y N 22 
YKF C13 C12 SING Y N 23 
YKF C7  N3  SING N N 24 
YKF C7  C21 DOUB Y N 25 
YKF C8  O4  DOUB N N 26 
YKF C8  C9  SING N N 27 
YKF C8  N3  SING N N 28 
YKF C9  C10 DOUB Y N 29 
YKF C23 C21 SING Y N 30 
YKF C12 C11 DOUB Y N 31 
YKF C21 C22 SING N N 32 
YKF C10 C11 SING Y N 33 
YKF C1  H3  SING N N 34 
YKF C1  H2  SING N N 35 
YKF C1  H1  SING N N 36 
YKF C10 H9  SING N N 37 
YKF C11 H10 SING N N 38 
YKF C12 H11 SING N N 39 
YKF C15 H12 SING N N 40 
YKF C16 H13 SING N N 41 
YKF C17 H14 SING N N 42 
YKF C18 H15 SING N N 43 
YKF C19 H16 SING N N 44 
YKF C20 H17 SING N N 45 
YKF C22 H19 SING N N 46 
YKF C22 H20 SING N N 47 
YKF C22 H18 SING N N 48 
YKF C23 H21 SING N N 49 
YKF C3  H5  SING N N 50 
YKF C5  H6  SING N N 51 
YKF C6  H7  SING N N 52 
YKF N1  H4  SING N N 53 
YKF N3  H8  SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YKF SMILES           ACDLabs              12.01 "O=C(OC)NN(C=O)c1ccc(NC(=O)c2cc(Oc3ccccc3)ccc2)c(C)c1"                                                                                              
YKF InChI            InChI                1.06  "InChI=1S/C23H21N3O5/c1-16-13-18(26(15-27)25-23(29)30-2)11-12-21(16)24-22(28)17-7-6-10-20(14-17)31-19-8-4-3-5-9-19/h3-15H,1-2H3,(H,24,28)(H,25,29)" 
YKF InChIKey         InChI                1.06  IFPAECUTANEMNN-UHFFFAOYSA-N                                                                                                                         
YKF SMILES_CANONICAL CACTVS               3.385 "COC(=O)NN(C=O)c1ccc(NC(=O)c2cccc(Oc3ccccc3)c2)c(C)c1"                                                                                              
YKF SMILES           CACTVS               3.385 "COC(=O)NN(C=O)c1ccc(NC(=O)c2cccc(Oc3ccccc3)c2)c(C)c1"                                                                                              
YKF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1NC(=O)c2cccc(c2)Oc3ccccc3)N(C=O)NC(=O)OC"                                                                                                
YKF SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1NC(=O)c2cccc(c2)Oc3ccccc3)N(C=O)NC(=O)OC"                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YKF "SYSTEMATIC NAME" ACDLabs              12.01 "methyl 2-formyl-2-[3-methyl-4-(3-phenoxybenzamido)phenyl]hydrazine-1-carboxylate"          
YKF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl ~{N}-[methanoyl-[3-methyl-4-[(3-phenoxyphenyl)carbonylamino]phenyl]amino]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YKF "Create component" 2023-02-09 RCSB 
YKF "Initial release"  2024-02-21 RCSB 
YKF "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YKF 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C3 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
