data_YJF
# 
_chem_comp.id                                    YJF 
_chem_comp.name                                  "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-(phenylsulfonyl)-1,2,3-triazol-1-yl]oxan-2-yl]sulfanyl-oxane-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H27 N3 O11 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        549.572 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YJF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PFF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YJF C10  C1  C 0 1 Y N N N N N -11.037 10.133 -1.139 6.329  -0.525 -0.503 C10  YJF 1  
YJF C11  C2  C 0 1 Y N N N N N -10.001 10.270 -2.064 6.012  -0.575 -1.847 C11  YJF 2  
YJF C12  C3  C 0 1 Y N N N N N -9.393  11.529 -2.335 6.737  0.173  -2.756 C12  YJF 3  
YJF C13  C4  C 0 1 Y N N N N N -9.885  12.696 -1.714 7.778  0.971  -2.321 C13  YJF 4  
YJF C14  C5  C 0 1 Y N N N N N -10.948 12.615 -0.812 8.095  1.021  -0.976 C14  YJF 5  
YJF C15  C6  C 0 1 Y N N N N N -11.486 11.335 -0.543 7.367  0.277  -0.067 C15  YJF 6  
YJF C17  C7  C 0 1 Y N N N N N -14.526 8.738  -1.226 2.828  -0.410 0.640  C17  YJF 7  
YJF C18  C8  C 0 1 N N R N N N -17.315 9.756  -2.267 -0.063 -0.305 0.627  C18  YJF 8  
YJF C20  C9  C 0 1 N N S N N N -18.843 9.618  -2.397 -1.491 0.148  0.314  C20  YJF 9  
YJF C22  C10 C 0 1 N N S N N N -21.355 10.811 -1.986 -4.106 -0.565 -0.531 C22  YJF 10 
YJF C23  C11 C 0 1 N N R N N N -22.149 11.385 -0.825 -5.009 -1.591 -1.221 C23  YJF 11 
YJF C25  C12 C 0 1 N N S N N N -23.619 11.157 -1.183 -6.434 -1.036 -1.297 C25  YJF 12 
YJF O31  O1  O 0 1 N N N N N N -22.793 10.797 -5.964 -5.536 1.603  2.747  O31  YJF 13 
YJF O32  O2  O 0 1 N N N N N N -21.753 11.385 -3.249 -4.626 -0.271 0.767  O32  YJF 14 
YJF O33  O3  O 0 1 N N N N N N -19.336 8.618  -1.505 -1.453 1.214  -0.638 O33  YJF 15 
YJF O36  O4  O 0 1 N N N N N N -20.914 6.312  -1.159 -2.155 3.877  -1.462 O36  YJF 16 
YJF C02  C13 C 0 1 N N R N N N -17.304 7.327  -1.596 0.703  2.011  0.106  C02  YJF 17 
YJF C03  C14 C 0 1 N N S N N N -16.719 8.403  -2.518 0.741  0.889  1.149  C03  YJF 18 
YJF C07  C15 C 0 1 Y N N N N N -13.208 8.483  -1.581 4.059  -0.481 1.198  C07  YJF 19 
YJF C27  C16 C 0 1 N N S N N N -24.018 11.801 -2.519 -6.915 -0.697 0.117  C27  YJF 20 
YJF C29  C17 C 0 1 N N R N N N -23.130 11.139 -3.566 -5.938 0.295  0.756  C29  YJF 21 
YJF C30  C18 C 0 1 N N N N N N -23.394 11.668 -4.998 -6.378 0.592  2.190  C30  YJF 22 
YJF C34  C19 C 0 1 N N R N N N -18.819 7.318  -1.823 -0.755 2.375  -0.187 C34  YJF 23 
YJF C35  C20 C 0 1 N N N N N N -19.486 6.335  -0.964 -0.803 3.454  -1.271 C35  YJF 24 
YJF N04  N1  N 0 1 Y N N N N N -15.274 8.416  -2.350 2.130  0.482  1.380  N04  YJF 25 
YJF N05  N2  N 0 1 Y N N N N N -14.420 7.945  -3.301 2.894  0.911  2.322  N05  YJF 26 
YJF N06  N3  N 0 1 Y N N N N N -13.208 8.019  -2.866 4.052  0.356  2.242  N06  YJF 27 
YJF O01  O5  O 0 1 N N N N N N -16.973 7.628  -0.247 1.336  1.568  -1.096 O01  YJF 28 
YJF O09  O6  O 0 1 N N N N N N -12.133 8.779  0.676  4.838  -2.557 -0.074 O09  YJF 29 
YJF O16  O7  O 0 1 N N N N N N -10.985 7.451  -0.973 6.249  -1.663 1.786  O16  YJF 30 
YJF O19  O8  O 0 1 N N N N N N -16.863 10.676 -3.233 -0.095 -1.332 1.620  O19  YJF 31 
YJF O24  O9  O 0 1 N N N N N N -21.852 10.674 0.374  -4.523 -1.843 -2.541 O24  YJF 32 
YJF O26  O10 O 0 1 N N N N N N -24.464 11.734 -0.177 -7.299 -2.016 -1.874 O26  YJF 33 
YJF O28  O11 O 0 1 N N N N N N -25.354 11.541 -2.771 -8.217 -0.112 0.052  O28  YJF 34 
YJF S08  S1  S 0 1 N N N N N N -11.811 8.622  -0.693 5.406  -1.479 0.656  S08  YJF 35 
YJF S21  S2  S 0 1 N N N N N N -19.606 11.179 -1.817 -2.431 -1.243 -0.372 S21  YJF 36 
YJF H111 H1  H 0 0 N N N N N N -9.650  9.395  -2.590 5.199  -1.199 -2.187 H111 YJF 37 
YJF H121 H2  H 0 0 N N N N N N -8.556  11.590 -3.015 6.489  0.133  -3.807 H121 YJF 38 
YJF H131 H3  H 0 0 N N N N N N -9.439  13.654 -1.937 8.345  1.555  -3.031 H131 YJF 39 
YJF H141 H4  H 0 0 N N N N N N -11.346 13.499 -0.336 8.908  1.645  -0.636 H141 YJF 40 
YJF H151 H5  H 0 0 N N N N N N -12.297 11.271 0.168  7.612  0.320  0.984  H151 YJF 41 
YJF H171 H6  H 0 0 N N N N N N -14.891 9.107  -0.279 2.476  -0.952 -0.225 H171 YJF 42 
YJF H181 H7  H 0 0 N N N N N N -17.065 10.092 -1.250 0.404  -0.690 -0.280 H181 YJF 43 
YJF H201 H8  H 0 0 N N N N N N -19.147 9.459  -3.442 -1.971 0.495  1.229  H201 YJF 44 
YJF H221 H9  H 0 0 N N N N N N -21.450 9.715  -2.001 -4.074 0.349  -1.125 H221 YJF 45 
YJF H231 H10 H 0 0 N N N N N N -21.947 12.461 -0.720 -5.009 -2.519 -0.650 H231 YJF 46 
YJF H251 H11 H 0 0 N N N N N N -23.801 10.074 -1.249 -6.443 -0.135 -1.912 H251 YJF 47 
YJF H311 H12 H 0 0 N N N N N N -22.960 11.129 -6.838 -5.757 1.842  3.658  H311 YJF 48 
YJF H361 H13 H 0 0 N N N N N N -21.302 5.663  -0.584 -2.261 4.561  -2.137 H361 YJF 49 
YJF H021 H14 H 0 0 N N N N N N -16.894 6.348  -1.884 1.227  2.885  0.493  H021 YJF 50 
YJF H031 H15 H 0 0 N N N N N N -16.950 8.116  -3.554 0.305  1.243  2.083  H031 YJF 51 
YJF H271 H16 H 0 0 N N N N N N -23.811 12.881 -2.485 -6.954 -1.607 0.716  H271 YJF 52 
YJF H291 H17 H 0 0 N N N N N N -23.326 10.057 -3.557 -5.930 1.219  0.179  H291 YJF 53 
YJF H301 H18 H 0 0 N N N N N N -22.963 12.675 -5.099 -6.302 -0.316 2.789  H301 YJF 54 
YJF H302 H19 H 0 0 N N N N N N -24.479 11.714 -5.175 -7.411 0.940  2.189  H302 YJF 55 
YJF H341 H20 H 0 0 N N N N N N -19.017 7.081  -2.879 -1.225 2.752  0.722  H341 YJF 56 
YJF H352 H21 H 0 0 N N N N N N -19.083 5.337  -1.191 -0.414 3.048  -2.205 H352 YJF 57 
YJF H351 H22 H 0 0 N N N N N N -19.277 6.585  0.087  -0.196 4.305  -0.964 H351 YJF 58 
YJF H011 H23 H 0 0 N N N N N N -17.335 6.961  0.325  1.346  2.229  -1.802 H011 YJF 59 
YJF H191 H24 H 0 0 N N N N N N -17.247 11.528 -3.063 -0.591 -2.119 1.357  H191 YJF 60 
YJF H241 H25 H 0 0 N N N N N N -22.353 11.041 1.093  -3.622 -2.192 -2.569 H241 YJF 61 
YJF H261 H26 H 0 0 N N N N N N -24.249 11.361 0.670  -7.050 -2.283 -2.769 H261 YJF 62 
YJF H281 H27 H 0 0 N N N N N N -25.889 11.962 -2.108 -8.886 -0.685 -0.347 H281 YJF 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YJF O31 C30  SING N N 1  
YJF C30 C29  SING N N 2  
YJF C29 O32  SING N N 3  
YJF C29 C27  SING N N 4  
YJF N05 N06  DOUB Y N 5  
YJF N05 N04  SING Y N 6  
YJF O32 C22  SING N N 7  
YJF O19 C18  SING N N 8  
YJF N06 C07  SING Y N 9  
YJF O28 C27  SING N N 10 
YJF C27 C25  SING N N 11 
YJF C03 N04  SING N N 12 
YJF C03 C18  SING N N 13 
YJF C03 C02  SING N N 14 
YJF C20 C18  SING N N 15 
YJF C20 S21  SING N N 16 
YJF C20 O33  SING N N 17 
YJF N04 C17  SING Y N 18 
YJF C12 C11  DOUB Y N 19 
YJF C12 C13  SING Y N 20 
YJF C11 C10  SING Y N 21 
YJF C22 S21  SING N N 22 
YJF C22 C23  SING N N 23 
YJF C34 C02  SING N N 24 
YJF C34 O33  SING N N 25 
YJF C34 C35  SING N N 26 
YJF C13 C14  DOUB Y N 27 
YJF C02 O01  SING N N 28 
YJF C07 C17  DOUB Y N 29 
YJF C07 S08  SING N N 30 
YJF C25 C23  SING N N 31 
YJF C25 O26  SING N N 32 
YJF O36 C35  SING N N 33 
YJF C10 S08  SING N N 34 
YJF C10 C15  DOUB Y N 35 
YJF O16 S08  DOUB N N 36 
YJF C23 O24  SING N N 37 
YJF C14 C15  SING Y N 38 
YJF S08 O09  DOUB N N 39 
YJF C11 H111 SING N N 40 
YJF C12 H121 SING N N 41 
YJF C13 H131 SING N N 42 
YJF C14 H141 SING N N 43 
YJF C15 H151 SING N N 44 
YJF C17 H171 SING N N 45 
YJF C18 H181 SING N N 46 
YJF C20 H201 SING N N 47 
YJF C22 H221 SING N N 48 
YJF C23 H231 SING N N 49 
YJF C25 H251 SING N N 50 
YJF O31 H311 SING N N 51 
YJF O36 H361 SING N N 52 
YJF C02 H021 SING N N 53 
YJF C03 H031 SING N N 54 
YJF C27 H271 SING N N 55 
YJF C29 H291 SING N N 56 
YJF C30 H301 SING N N 57 
YJF C30 H302 SING N N 58 
YJF C34 H341 SING N N 59 
YJF C35 H352 SING N N 60 
YJF C35 H351 SING N N 61 
YJF O01 H011 SING N N 62 
YJF O19 H191 SING N N 63 
YJF O24 H241 SING N N 64 
YJF O26 H261 SING N N 65 
YJF O28 H281 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YJF InChI            InChI                1.06  "InChI=1S/C20H27N3O11S2/c24-7-10-14(26)13(23-6-12(21-22-23)36(31,32)9-4-2-1-3-5-9)16(28)19(33-10)35-20-18(30)17(29)15(27)11(8-25)34-20/h1-6,10-11,13-20,24-30H,7-8H2/t10-,11-,13+,14+,15-,16-,17+,18-,19+,20+/m1/s1" 
YJF InChIKey         InChI                1.06  QYZOKSXMSOLNQR-VTOAZQAJSA-N                                                                                                                                                                                          
YJF SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](S[C@@H]2O[C@H](CO)[C@H](O)[C@@H]([C@H]2O)n3cc(nn3)[S](=O)(=O)c4ccccc4)[C@H](O)[C@@H](O)[C@@H]1O"                                                                                                    
YJF SMILES           CACTVS               3.385 "OC[CH]1O[CH](S[CH]2O[CH](CO)[CH](O)[CH]([CH]2O)n3cc(nn3)[S](=O)(=O)c4ccccc4)[CH](O)[CH](O)[CH]1O"                                                                                                                   
YJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)S(=O)(=O)c2cn(nn2)[C@H]3[C@H]([C@H](O[C@H]([C@@H]3O)S[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)CO)O"                                                                                                    
YJF SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)S(=O)(=O)c2cn(nn2)C3C(C(OC(C3O)SC4C(C(C(C(O4)CO)O)O)O)CO)O"                                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           YJF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-[4-(phenylsulfonyl)-1,2,3-triazol-1-yl]oxan-2-yl]sulfanyl-oxane-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YJF "Create component" 2023-06-19 PDBE 
YJF "Initial release"  2023-11-08 RCSB 
# 
