data_Y8F
# 
_chem_comp.id                                    Y8F 
_chem_comp.name                                  "[(2~{S})-1-dodecanoyloxy-3-phosphonooxy-propan-2-yl] tridecanoate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H55 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-27 
_chem_comp.pdbx_modified_date                    2024-11-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        550.705 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y8F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8X6X 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y8F C1  C1  C 0 1 N N S N N N 168.957 166.895 182.908 0.329   2.613  -1.577 C1  Y8F 1  
Y8F C2  C2  C 0 1 N N N N N N 169.751 165.731 182.354 0.070   3.538  -0.386 C2  Y8F 2  
Y8F C3  C3  C 0 1 N N N N N N 168.570 167.744 185.139 2.405   1.519  -1.159 C3  Y8F 3  
Y8F C4  C4  C 0 1 N N N N N N 169.167 167.792 186.513 3.235   0.344  -0.711 C4  Y8F 4  
Y8F C5  C5  C 0 1 N N N N N N 168.334 167.149 187.604 4.720   0.689  -0.842 C5  Y8F 5  
Y8F C6  C6  C 0 1 N N N N N N 167.057 167.913 187.888 5.563   -0.504 -0.387 C6  Y8F 6  
Y8F P1  P1  P 0 1 N N N N N N 169.755 163.107 182.199 -1.275  3.565  1.923  P1  Y8F 7  
Y8F O1  O1  O 0 1 N N N N N N 169.265 164.487 182.889 -0.791  2.882  0.547  O1  Y8F 8  
Y8F O2  O2  O 0 1 N N N N N N 171.271 163.104 182.302 -2.122  2.499  2.782  O2  Y8F 9  
Y8F O3  O3  O 0 1 N N N N N N 169.260 163.182 180.763 -0.092  3.996  2.701  O3  Y8F 10 
Y8F O4  O4  O 0 1 N N N N N N 169.101 161.989 182.995 -2.196  4.843  1.594  O4  Y8F 11 
Y8F O5  O5  O 0 1 N N N N N N 169.329 167.011 184.312 1.065   1.443  -1.131 O5  Y8F 12 
Y8F O6  O6  O 0 1 N N N N N N 167.547 168.279 184.797 2.945   2.529  -1.544 O6  Y8F 13 
Y8F O7  O7  O 0 1 N N N N N N 169.568 167.863 180.800 -1.831  1.573  -1.151 O7  Y8F 14 
Y8F O8  O8  O 0 1 N N N N N N 167.378 167.798 180.317 -3.405  1.247  -2.668 O8  Y8F 15 
Y8F C10 C7  C 0 1 N N N N N N 167.192 167.404 192.518 10.218  -2.200 0.261  C10 Y8F 16 
Y8F C11 C8  C 0 1 N N N N N N 166.717 167.695 193.936 11.703  -1.855 0.131  C11 Y8F 17 
Y8F C12 C9  C 0 1 N N N N N N 167.768 168.282 194.868 12.546  -3.047 0.586  C12 Y8F 18 
Y8F C13 C10 C 0 1 N N N N N N 167.233 168.682 196.237 14.031  -2.702 0.455  C13 Y8F 19 
Y8F C14 C11 C 0 1 N N N N N N 168.257 169.306 197.171 14.874  -3.895 0.910  C14 Y8F 20 
Y8F C15 C12 C 0 1 N N N N N N 167.693 169.748 198.504 16.359  -3.550 0.779  C15 Y8F 21 
Y8F C16 C13 C 0 1 N N N N N N 169.275 168.186 182.177 -1.006  2.176  -2.183 C16 Y8F 22 
Y8F C17 C14 C 0 1 N N N N N N 168.524 167.614 179.998 -3.044  1.133  -1.521 C17 Y8F 23 
Y8F C18 C15 C 0 1 N N N N N N 168.998 167.093 178.675 -3.957  0.497  -0.504 C18 Y8F 24 
Y8F C19 C16 C 0 1 N N N N N N 168.683 167.967 177.480 -5.267  0.087  -1.181 C19 Y8F 25 
Y8F C20 C17 C 0 1 N N N N N N 169.491 167.456 176.299 -6.193  -0.559 -0.149 C20 Y8F 26 
Y8F C21 C18 C 0 1 N N N N N N 169.408 168.204 174.977 -7.503  -0.969 -0.826 C21 Y8F 27 
Y8F C22 C19 C 0 1 N N N N N N 170.450 167.701 173.989 -8.429  -1.616 0.206  C22 Y8F 28 
Y8F C23 C20 C 0 1 N N N N N N 170.507 168.435 172.657 -9.739  -2.025 -0.470 C23 Y8F 29 
Y8F C24 C21 C 0 1 N N N N N N 170.718 169.936 172.790 -10.666 -2.672 0.562  C24 Y8F 30 
Y8F C25 C22 C 0 1 N N N N N N 170.996 170.641 171.470 -11.975 -3.081 -0.115 C25 Y8F 31 
Y8F C26 C23 C 0 1 N N N N N N 170.004 170.328 170.359 -12.902 -3.728 0.917  C26 Y8F 32 
Y8F C27 C24 C 0 1 N N N N N N 170.266 171.111 169.086 -14.212 -4.137 0.241  C27 Y8F 33 
Y8F C28 C25 C 0 1 N N N N N N 171.697 171.000 168.614 -15.138 -4.784 1.273  C28 Y8F 34 
Y8F C7  C26 C 0 1 N N N N N N 166.726 168.036 189.369 7.048   -0.159 -0.518 C7  Y8F 35 
Y8F C8  C27 C 0 1 N N N N N N 166.453 166.745 190.126 7.891   -1.352 -0.063 C8  Y8F 36 
Y8F C9  C28 C 0 1 N N N N N N 166.073 166.960 191.586 9.375   -1.007 -0.194 C9  Y8F 37 
Y8F H1  H1  H 0 1 N N N N N N 167.882 166.680 182.817 0.913   3.144  -2.329 H1  Y8F 38 
Y8F H2  H2  H 0 1 N N N N N N 170.810 165.853 182.627 1.016   3.778  0.100  H2  Y8F 39 
Y8F H3  H3  H 0 1 N N N N N N 169.654 165.716 181.258 -0.403  4.456  -0.734 H3  Y8F 40 
Y8F H4  H4  H 0 1 N N N N N N 170.139 167.277 186.480 3.006   0.113  0.329  H4  Y8F 41 
Y8F H5  H5  H 0 1 N N N N N N 169.320 168.848 186.780 3.007   -0.521 -1.334 H5  Y8F 42 
Y8F H6  H6  H 0 1 N N N N N N 168.071 166.128 187.291 4.949   0.920  -1.882 H6  Y8F 43 
Y8F H7  H7  H 0 1 N N N N N N 168.932 167.108 188.526 4.948   1.554  -0.219 H7  Y8F 44 
Y8F H8  H8  H 0 1 N N N N N N 167.160 168.926 187.471 5.334   -0.735 0.654  H8  Y8F 45 
Y8F H9  H9  H 0 1 N N N N N N 166.225 167.394 187.389 5.334   -1.369 -1.010 H9  Y8F 46 
Y8F H10 H10 H 0 1 N N N N N N 171.648 163.151 181.431 -2.446  2.842  3.626  H10 Y8F 47 
Y8F H11 H11 H 0 1 N N N N N N 168.484 161.524 182.441 -2.991  4.634  1.084  H11 Y8F 48 
Y8F H12 H12 H 0 1 N N N N N N 167.948 166.606 192.560 9.990   -3.065 -0.362 H12 Y8F 49 
Y8F H13 H13 H 0 1 N N N N N N 167.646 168.318 192.108 9.989   -2.431 1.302  H13 Y8F 50 
Y8F H14 H14 H 0 1 N N N N N N 165.881 168.408 193.875 11.932  -1.623 -0.910 H14 Y8F 51 
Y8F H15 H15 H 0 1 N N N N N N 166.362 166.751 194.376 11.931  -0.990 0.753  H15 Y8F 52 
Y8F H16 H16 H 0 1 N N N N N N 168.559 167.532 195.012 12.317  -3.279 1.626  H16 Y8F 53 
Y8F H17 H17 H 0 1 N N N N N N 168.194 169.176 194.389 12.318  -3.912 -0.038 H17 Y8F 54 
Y8F H18 H18 H 0 1 N N N N N N 166.421 169.409 196.087 14.260  -2.471 -0.586 H18 Y8F 55 
Y8F H19 H19 H 0 1 N N N N N N 166.833 167.780 196.723 14.259  -1.837 1.077  H19 Y8F 56 
Y8F H20 H20 H 0 1 N N N N N N 169.048 168.565 197.360 14.645  -4.126 1.950  H20 Y8F 57 
Y8F H21 H21 H 0 1 N N N N N N 168.689 170.185 196.671 14.646  -4.760 0.287  H21 Y8F 58 
Y8F H22 H22 H 0 1 N N N N N N 168.496 170.186 199.115 16.588  -3.319 -0.262 H22 Y8F 59 
Y8F H23 H23 H 0 1 N N N N N N 166.907 170.500 198.338 16.587  -2.685 1.402  H23 Y8F 60 
Y8F H24 H24 H 0 1 N N N N N N 167.266 168.880 199.027 16.959  -4.400 1.103  H24 Y8F 61 
Y8F H25 H25 H 0 1 N N N N N N 170.147 168.671 182.640 -1.519  3.044  -2.598 H25 Y8F 62 
Y8F H26 H26 H 0 1 N N N N N N 168.410 168.864 182.225 -0.825  1.448  -2.974 H26 Y8F 63 
Y8F H27 H27 H 0 1 N N N N N N 168.530 166.111 178.510 -3.474  -0.385 -0.084 H27 Y8F 64 
Y8F H28 H28 H 0 1 N N N N N N 170.090 166.974 178.729 -4.167  1.210  0.292  H28 Y8F 65 
Y8F H29 H29 H 0 1 N N N N N N 168.958 169.010 177.697 -5.750  0.969  -1.601 H29 Y8F 66 
Y8F H30 H30 H 0 1 N N N N N N 167.609 167.911 177.250 -5.056  -0.627 -1.978 H30 Y8F 67 
Y8F H31 H31 H 0 1 N N N N N N 169.166 166.423 176.107 -5.710  -1.441 0.271  H31 Y8F 68 
Y8F H32 H32 H 0 1 N N N N N N 170.547 167.457 176.605 -6.403  0.154  0.648  H32 Y8F 69 
Y8F H33 H33 H 0 1 N N N N N N 169.577 169.275 175.161 -7.986  -0.087 -1.246 H33 Y8F 70 
Y8F H34 H34 H 0 1 N N N N N N 168.406 168.059 174.546 -7.293  -1.683 -1.622 H34 Y8F 71 
Y8F H35 H35 H 0 1 N N N N N N 170.236 166.642 173.782 -7.946  -2.498 0.627  H35 Y8F 72 
Y8F H36 H36 H 0 1 N N N N N N 171.437 167.789 174.466 -8.640  -0.902 1.003  H36 Y8F 73 
Y8F H37 H37 H 0 1 N N N N N N 169.559 168.264 172.126 -10.222 -1.143 -0.890 H37 Y8F 74 
Y8F H38 H38 H 0 1 N N N N N N 171.337 168.019 172.067 -9.529  -2.739 -1.267 H38 Y8F 75 
Y8F H39 H39 H 0 1 N N N N N N 171.573 170.107 173.460 -10.182 -3.554 0.982  H39 Y8F 76 
Y8F H40 H40 H 0 1 N N N N N N 169.812 170.375 173.232 -10.876 -1.958 1.359  H40 Y8F 77 
Y8F H41 H41 H 0 1 N N N N N N 171.998 170.344 171.128 -12.459 -2.199 -0.535 H41 Y8F 78 
Y8F H42 H42 H 0 1 N N N N N N 170.977 171.726 171.651 -11.765 -3.795 -0.911 H42 Y8F 79 
Y8F H43 H43 H 0 1 N N N N N N 168.992 170.569 170.716 -12.419 -4.610 1.337  H43 Y8F 80 
Y8F H44 H44 H 0 1 N N N N N N 170.065 169.254 170.128 -13.112 -3.014 1.714  H44 Y8F 81 
Y8F H45 H45 H 0 1 N N N N N N 170.039 172.171 169.272 -14.695 -3.256 -0.179 H45 Y8F 82 
Y8F H46 H46 H 0 1 N N N N N N 169.604 170.728 168.295 -14.001 -4.851 -0.556 H46 Y8F 83 
Y8F H47 H47 H 0 1 N N N N N N 171.826 171.586 167.692 -16.071 -5.076 0.791  H47 Y8F 84 
Y8F H48 H48 H 0 1 N N N N N N 172.371 171.388 169.392 -14.655 -5.666 1.693  H48 Y8F 85 
Y8F H49 H49 H 0 1 N N N N N N 171.936 169.945 168.415 -15.348 -4.070 2.069  H49 Y8F 86 
Y8F H50 H50 H 0 1 N N N N N N 167.576 168.534 189.859 7.277   0.072  -1.558 H50 Y8F 87 
Y8F H51 H51 H 0 1 N N N N N N 165.830 168.668 189.457 7.276   0.706  0.105  H51 Y8F 88 
Y8F H52 H52 H 0 1 N N N N N N 165.627 166.217 189.626 7.661   -1.583 0.978  H52 Y8F 89 
Y8F H53 H53 H 0 1 N N N N N N 167.360 166.123 190.091 7.662   -2.217 -0.686 H53 Y8F 90 
Y8F H54 H54 H 0 1 N N N N N N 165.286 167.728 191.618 9.604   -0.142 0.429  H54 Y8F 91 
Y8F H55 H55 H 0 1 N N N N N N 165.673 166.010 191.971 9.604   -0.776 -1.234 H55 Y8F 92 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y8F C28 C27 SING N N 1  
Y8F C27 C26 SING N N 2  
Y8F C26 C25 SING N N 3  
Y8F C25 C24 SING N N 4  
Y8F C23 C24 SING N N 5  
Y8F C23 C22 SING N N 6  
Y8F C22 C21 SING N N 7  
Y8F C21 C20 SING N N 8  
Y8F C20 C19 SING N N 9  
Y8F C19 C18 SING N N 10 
Y8F C18 C17 SING N N 11 
Y8F C17 O8  DOUB N N 12 
Y8F C17 O7  SING N N 13 
Y8F O3  P1  DOUB N N 14 
Y8F O7  C16 SING N N 15 
Y8F C16 C1  SING N N 16 
Y8F P1  O2  SING N N 17 
Y8F P1  O1  SING N N 18 
Y8F P1  O4  SING N N 19 
Y8F C2  O1  SING N N 20 
Y8F C2  C1  SING N N 21 
Y8F C1  O5  SING N N 22 
Y8F O5  C3  SING N N 23 
Y8F O6  C3  DOUB N N 24 
Y8F C3  C4  SING N N 25 
Y8F C4  C5  SING N N 26 
Y8F C5  C6  SING N N 27 
Y8F C6  C7  SING N N 28 
Y8F C7  C8  SING N N 29 
Y8F C8  C9  SING N N 30 
Y8F C9  C10 SING N N 31 
Y8F C10 C11 SING N N 32 
Y8F C11 C12 SING N N 33 
Y8F C12 C13 SING N N 34 
Y8F C13 C14 SING N N 35 
Y8F C14 C15 SING N N 36 
Y8F C1  H1  SING N N 37 
Y8F C2  H2  SING N N 38 
Y8F C2  H3  SING N N 39 
Y8F C4  H4  SING N N 40 
Y8F C4  H5  SING N N 41 
Y8F C5  H6  SING N N 42 
Y8F C5  H7  SING N N 43 
Y8F C6  H8  SING N N 44 
Y8F C6  H9  SING N N 45 
Y8F O2  H10 SING N N 46 
Y8F O4  H11 SING N N 47 
Y8F C10 H12 SING N N 48 
Y8F C10 H13 SING N N 49 
Y8F C11 H14 SING N N 50 
Y8F C11 H15 SING N N 51 
Y8F C12 H16 SING N N 52 
Y8F C12 H17 SING N N 53 
Y8F C13 H18 SING N N 54 
Y8F C13 H19 SING N N 55 
Y8F C14 H20 SING N N 56 
Y8F C14 H21 SING N N 57 
Y8F C15 H22 SING N N 58 
Y8F C15 H23 SING N N 59 
Y8F C15 H24 SING N N 60 
Y8F C16 H25 SING N N 61 
Y8F C16 H26 SING N N 62 
Y8F C18 H27 SING N N 63 
Y8F C18 H28 SING N N 64 
Y8F C19 H29 SING N N 65 
Y8F C19 H30 SING N N 66 
Y8F C20 H31 SING N N 67 
Y8F C20 H32 SING N N 68 
Y8F C21 H33 SING N N 69 
Y8F C21 H34 SING N N 70 
Y8F C22 H35 SING N N 71 
Y8F C22 H36 SING N N 72 
Y8F C23 H37 SING N N 73 
Y8F C23 H38 SING N N 74 
Y8F C24 H39 SING N N 75 
Y8F C24 H40 SING N N 76 
Y8F C25 H41 SING N N 77 
Y8F C25 H42 SING N N 78 
Y8F C26 H43 SING N N 79 
Y8F C26 H44 SING N N 80 
Y8F C27 H45 SING N N 81 
Y8F C27 H46 SING N N 82 
Y8F C28 H47 SING N N 83 
Y8F C28 H48 SING N N 84 
Y8F C28 H49 SING N N 85 
Y8F C7  H50 SING N N 86 
Y8F C7  H51 SING N N 87 
Y8F C8  H52 SING N N 88 
Y8F C8  H53 SING N N 89 
Y8F C9  H54 SING N N 90 
Y8F C9  H55 SING N N 91 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y8F InChI            InChI                1.06  "InChI=1S/C28H55O8P/c1-3-5-7-9-11-13-15-17-19-21-23-28(30)36-26(25-35-37(31,32)33)24-34-27(29)22-20-18-16-14-12-10-8-6-4-2/h26H,3-25H2,1-2H3,(H2,31,32,33)/t26-/m0/s1" 
Y8F InChIKey         InChI                1.06  HSXSRFZJKUWGTG-SANMLTNESA-N                                                                                                                                            
Y8F SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCCCCCCCCCC)CO[P](O)(O)=O"                                                                                                            
Y8F SMILES           CACTVS               3.385 "CCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCCCCCCCCC)CO[P](O)(O)=O"                                                                                                              
Y8F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCCCCCCCCCC)COP(=O)(O)O"                                                                                                              
Y8F SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCC(=O)OC(COC(=O)CCCCCCCCCCC)COP(=O)(O)O"                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           Y8F 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{S})-1-dodecanoyloxy-3-phosphonooxy-propan-2-yl] tridecanoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y8F "Create component" 2023-11-27 PDBJ 
Y8F "Initial release"  2024-11-27 RCSB 
# 
