data_XNF
# 
_chem_comp.id                                    XNF 
_chem_comp.name                                  "4-[[(~{S})-dimethoxyphosphoryl-[4-[(~{S})-dimethoxyphosphoryl-[(4-sulfamoylphenyl)amino]methyl]phenyl]methyl]amino]benzenesulfonamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H32 N4 O10 P2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-06 
_chem_comp.pdbx_modified_date                    2024-11-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        662.609 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XNF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R2F 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
XNF O1   O1  O 0 1 N N N 1.145  10.955 11.511 1.864   3.251  -1.050 O1   XNF 1  N N N 
XNF P2   P1  P 0 1 N N N 1.100  11.533 12.887 2.626   2.885  0.164  P2   XNF 2  N N N 
XNF O3   O2  O 0 1 N N N 2.475  12.214 13.258 4.123   3.467  0.054  O3   XNF 3  N N N 
XNF C4   C1  C 0 1 N N N 3.720  11.690 12.700 4.405   4.844  -0.201 C4   XNF 4  N N N 
XNF O5   O3  O 0 1 N N N -0.048 12.562 13.155 1.902   3.507  1.460  O5   XNF 5  N N N 
XNF C6   C2  C 0 1 N N N -1.436 12.138 13.075 1.605   4.898  1.593  C6   XNF 6  N N N 
XNF C7   C3  C 0 1 N N S 0.780  10.414 14.290 2.690   1.069  0.316  C7   XNF 7  N N N 
XNF C8   C4  C 0 1 Y N N -0.075 9.187  14.041 1.288   0.516  0.318  C8   XNF 8  N N N 
XNF C9   C5  C 0 1 Y N N 0.319  8.204  13.153 0.646   0.263  1.515  C9   XNF 9  N N N 
XNF C10  C6  C 0 1 Y N N -0.500 7.110  12.897 -0.640  -0.245 1.517  C10  XNF 10 N N N 
XNF C11  C7  C 0 1 Y N N -1.730 6.968  13.504 -1.283  -0.500 0.320  C11  XNF 11 N N N 
XNF C12  C8  C 0 1 N N S -2.665 5.859  13.053 -2.684  -1.054 0.321  C12  XNF 12 N N N 
XNF P13  P2  P 0 1 N N N -3.341 6.225  11.393 -2.620  -2.870 0.173  P13  XNF 13 N N N 
XNF O14  O4  O 0 1 N N N -2.078 6.054  10.461 -1.894  -3.489 1.470  O14  XNF 14 N N N 
XNF C15  C9  C 0 1 N N N -1.436 7.169  9.720  -1.597  -4.880 1.606  C15  XNF 15 N N N 
XNF O16  O5  O 0 1 N N N -3.841 7.735  11.381 -4.117  -3.453 0.066  O16  XNF 16 N N N 
XNF C17  C10 C 0 1 N N N -4.747 8.355  10.380 -4.399  -4.829 -0.200 C17  XNF 17 N N N 
XNF O18  O6  O 0 1 N N N -4.478 5.392  11.083 -1.859  -3.239 -1.041 O18  XNF 18 N N N 
XNF N19  N1  N 0 1 N N N -3.788 5.661  13.925 -3.431  -0.498 -0.810 N19  XNF 19 N N N 
XNF C20  C11 C 0 1 Y N N -4.153 4.401  14.440 -4.745  -0.060 -0.632 C20  XNF 20 N N N 
XNF C21  C12 C 0 1 Y N N -3.329 3.375  14.854 -5.479  0.399  -1.719 C21  XNF 21 N N N 
XNF C22  C13 C 0 1 Y N N -3.850 2.296  15.556 -6.778  0.831  -1.540 C22  XNF 22 N N N 
XNF C23  C14 C 0 1 Y N N -5.197 2.259  15.828 -7.349  0.806  -0.280 C23  XNF 23 N N N 
XNF S24  S1  S 0 1 N N N -5.892 0.916  16.734 -9.008  1.358  -0.056 S24  XNF 24 N N N 
XNF O25  O7  O 0 1 N N N -7.351 1.049  16.592 -9.287  2.239  -1.135 O25  XNF 25 N N N 
XNF N26  N2  N 0 1 N N N -5.425 -0.504 16.091 -9.993  0.043  -0.261 N26  XNF 26 N N N 
XNF O27  O8  O 0 1 N N N -5.393 1.032  18.071 -9.123  1.738  1.308  O27  XNF 27 N N N 
XNF C28  C15 C 0 1 Y N N -6.024 3.283  15.401 -6.622  0.350  0.803  C28  XNF 28 N N N 
XNF C29  C16 C 0 1 Y N N -5.487 4.338  14.710 -5.324  -0.088 0.630  C29  XNF 29 N N N 
XNF C30  C17 C 0 1 Y N N -2.109 7.946  14.402 -0.641  -0.246 -0.878 C30  XNF 30 N N N 
XNF C31  C18 C 0 1 Y N N -1.297 9.043  14.664 0.643   0.265  -0.879 C31  XNF 31 N N N 
XNF N32  N3  N 0 1 N N N 2.039  10.135 14.944 3.435   0.510  -0.815 N32  XNF 32 N N N 
XNF C33  C19 C 0 1 Y N N 2.382  10.807 16.102 4.746   0.063  -0.635 C33  XNF 33 N N N 
XNF C34  C20 C 0 1 Y N N 1.659  11.902 16.570 5.474   -0.412 -1.718 C34  XNF 34 N N N 
XNF C35  C21 C 0 1 Y N N 2.013  12.515 17.755 6.770   -0.853 -1.537 C35  XNF 35 N N N 
XNF C36  C22 C 0 1 Y N N 3.094  12.027 18.472 7.343   -0.821 -0.279 C36  XNF 36 N N N 
XNF S37  S2  S 0 1 N N N 3.579  12.838 19.965 8.998   -1.384 -0.053 S37  XNF 37 N N N 
XNF O38  O9  O 0 1 N N N 4.500  11.959 20.700 9.267   -2.278 -1.124 O38  XNF 38 N N N 
XNF N39  N4  N 0 1 N N N 4.422  14.142 19.497 9.993   -0.079 -0.271 N39  XNF 39 N N N 
XNF O40  O10 O 0 1 N N N 2.358  13.283 20.601 9.112   -1.753 1.315  O40  XNF 40 N N N 
XNF C41  C23 C 0 1 Y N N 3.820  10.941 18.018 6.621   -0.349 0.801  C41  XNF 41 N N N 
XNF C42  C24 C 0 1 Y N N 3.460  10.337 16.831 5.326   0.098  0.626  C42  XNF 42 N N N 
XNF H4C  H1  H 0 1 N N N 4.567  12.287 13.068 4.078   5.446  0.647  H4C  XNF 43 N N N 
XNF H4A  H2  H 0 1 N N N 3.848  10.642 13.010 5.478   4.974  -0.347 H4A  XNF 44 N N N 
XNF H4B  H3  H 0 1 N N N 3.682  11.746 11.602 3.875   5.163  -1.099 H4B  XNF 45 N N N 
XNF H6C  H4  H 0 1 N N N -2.094 12.992 13.293 1.117   5.076  2.552  H6C  XNF 46 N N N 
XNF H6B  H5  H 0 1 N N N -1.647 11.762 12.063 2.529   5.473  1.544  H6B  XNF 47 N N N 
XNF H6A  H6  H 0 1 N N N -1.618 11.339 13.809 0.942   5.207  0.785  H6A  XNF 48 N N N 
XNF H7   H7  H 0 1 N N N 0.202  11.044 14.982 3.188   0.800  1.248  H7   XNF 49 N N N 
XNF H9   H8  H 0 1 N N N 1.273  8.286  12.653 1.149   0.463  2.450  H9   XNF 50 N N N 
XNF H10  H9  H 0 1 N N N -0.164 6.352  12.205 -1.141  -0.442 2.452  H10  XNF 51 N N N 
XNF H12  H10 H 0 1 N N N -2.094 4.925  12.946 -3.182  -0.783 1.253  H12  XNF 52 N N N 
XNF H15A H11 H 0 0 N N N -0.579 6.784  9.148  -1.108  -5.055 2.564  H15A XNF 53 N N N 
XNF H15C H12 H 0 0 N N N -2.165 7.619  9.030  -2.521  -5.456 1.559  H15C XNF 54 N N N 
XNF H15B H13 H 0 0 N N N -1.088 7.931  10.433 -0.934  -5.190 0.798  H15B XNF 55 N N N 
XNF H17C H14 H 0 0 N N N -4.910 9.412  10.637 -3.872  -5.140 -1.102 H17C XNF 56 N N N 
XNF H17B H15 H 0 0 N N N -4.291 8.287  9.381  -4.069  -5.437 0.642  H17B XNF 57 N N N 
XNF H17A H16 H 0 0 N N N -5.711 7.825  10.380 -5.472  -4.958 -0.343 H17A XNF 58 N N N 
XNF H19  H17 H 0 1 N N N -3.625 6.246  14.720 -3.012  -0.434 -1.683 H19  XNF 59 N N N 
XNF H21  H18 H 0 1 N N N -2.273 3.411  14.631 -5.033  0.419  -2.703 H21  XNF 60 N N N 
XNF H22  H19 H 0 1 N N N -3.204 1.495  15.885 -7.349  1.189  -2.384 H22  XNF 61 N N N 
XNF H26A H20 H 0 0 N N N -5.826 -1.256 16.615 -10.837 -0.009 0.215  H26A XNF 62 N N N 
XNF H26B H21 H 0 0 N N N -5.734 -0.557 15.141 -9.726  -0.676 -0.855 H26B XNF 63 N N N 
XNF H28  H22 H 0 1 N N N -7.083 3.251  15.610 -7.071  0.332  1.785  H28  XNF 64 N N N 
XNF H29  H23 H 0 1 N N N -6.134 5.135  14.373 -4.756  -0.445 1.477  H29  XNF 65 N N N 
XNF H30  H24 H 0 1 N N N -3.057 7.857  14.912 -1.144  -0.445 -1.813 H30  XNF 66 N N N 
XNF H31  H25 H 0 1 N N N -1.628 9.794  15.366 1.144   0.463  -1.815 H31  XNF 67 N N N 
XNF H32  H26 H 0 1 N N N 2.039  9.160  15.166 3.017   0.451  -1.688 H32  XNF 68 N N N 
XNF H34  H27 H 0 1 N N N 0.818  12.273 16.003 5.027   -0.438 -2.701 H34  XNF 69 N N N 
XNF H35  H28 H 0 1 N N N 1.454  13.365 18.119 7.337   -1.223 -2.379 H35  XNF 70 N N N 
XNF H39A H29 H 0 0 N N N 4.728  14.649 20.303 10.839  -0.029 0.203  H39A XNF 71 N N N 
XNF H39B H30 H 0 0 N N N 5.217  13.851 18.965 9.732   0.636  -0.872 H39B XNF 72 N N N 
XNF H41  H31 H 0 1 N N N 4.660  10.570 18.587 7.072   -0.325 1.783  H41  XNF 73 N N N 
XNF H42  H32 H 0 1 N N N 4.024  9.491  16.468 4.763   0.468  1.471  H42  XNF 74 N N N 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XNF O1  P2   DOUB N N 1  
XNF P2  O3   SING N N 2  
XNF O3  C4   SING N N 3  
XNF P2  O5   SING N N 4  
XNF O5  C6   SING N N 5  
XNF P2  C7   SING N N 6  
XNF C7  C8   SING N N 7  
XNF C8  C9   DOUB Y N 8  
XNF C9  C10  SING Y N 9  
XNF C10 C11  DOUB Y N 10 
XNF C11 C12  SING N N 11 
XNF C12 P13  SING N N 12 
XNF P13 O14  SING N N 13 
XNF O14 C15  SING N N 14 
XNF P13 O16  SING N N 15 
XNF O16 C17  SING N N 16 
XNF P13 O18  DOUB N N 17 
XNF C12 N19  SING N N 18 
XNF N19 C20  SING N N 19 
XNF C20 C21  DOUB Y N 20 
XNF C21 C22  SING Y N 21 
XNF C22 C23  DOUB Y N 22 
XNF C23 S24  SING N N 23 
XNF S24 O25  DOUB N N 24 
XNF S24 N26  SING N N 25 
XNF S24 O27  DOUB N N 26 
XNF C23 C28  SING Y N 27 
XNF C28 C29  DOUB Y N 28 
XNF C11 C30  SING Y N 29 
XNF C30 C31  DOUB Y N 30 
XNF C7  N32  SING N N 31 
XNF N32 C33  SING N N 32 
XNF C33 C34  DOUB Y N 33 
XNF C34 C35  SING Y N 34 
XNF C35 C36  DOUB Y N 35 
XNF C36 S37  SING N N 36 
XNF S37 O38  DOUB N N 37 
XNF S37 N39  SING N N 38 
XNF S37 O40  DOUB N N 39 
XNF C36 C41  SING Y N 40 
XNF C41 C42  DOUB Y N 41 
XNF C31 C8   SING Y N 42 
XNF C29 C20  SING Y N 43 
XNF C42 C33  SING Y N 44 
XNF C4  H4C  SING N N 45 
XNF C4  H4A  SING N N 46 
XNF C4  H4B  SING N N 47 
XNF C6  H6C  SING N N 48 
XNF C6  H6B  SING N N 49 
XNF C6  H6A  SING N N 50 
XNF C7  H7   SING N N 51 
XNF C9  H9   SING N N 52 
XNF C10 H10  SING N N 53 
XNF C12 H12  SING N N 54 
XNF C15 H15A SING N N 55 
XNF C15 H15C SING N N 56 
XNF C15 H15B SING N N 57 
XNF C17 H17C SING N N 58 
XNF C17 H17B SING N N 59 
XNF C17 H17A SING N N 60 
XNF N19 H19  SING N N 61 
XNF C21 H21  SING N N 62 
XNF C22 H22  SING N N 63 
XNF N26 H26A SING N N 64 
XNF N26 H26B SING N N 65 
XNF C28 H28  SING N N 66 
XNF C29 H29  SING N N 67 
XNF C30 H30  SING N N 68 
XNF C31 H31  SING N N 69 
XNF N32 H32  SING N N 70 
XNF C34 H34  SING N N 71 
XNF C35 H35  SING N N 72 
XNF N39 H39A SING N N 73 
XNF N39 H39B SING N N 74 
XNF C41 H41  SING N N 75 
XNF C42 H42  SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XNF InChI            InChI                1.06  "InChI=1S/C24H32N4O10P2S2/c1-35-39(29,36-2)23(27-19-9-13-21(14-10-19)41(25,31)32)17-5-7-18(8-6-17)24(40(30,37-3)38-4)28-20-11-15-22(16-12-20)42(26,33)34/h5-16,23-24,27-28H,1-4H3,(H2,25,31,32)(H2,26,33,34)/t23-,24+" 
XNF InChIKey         InChI                1.06  WAFYATGDBDLIRD-PSWAGMNNSA-N                                                                                                                                                                                            
XNF SMILES_CANONICAL CACTVS               3.385 "CO[P](=O)(OC)[C@H](Nc1ccc(cc1)[S](N)(=O)=O)c2ccc(cc2)[C@@H](Nc3ccc(cc3)[S](N)(=O)=O)[P](=O)(OC)OC"                                                                                                                    
XNF SMILES           CACTVS               3.385 "CO[P](=O)(OC)[CH](Nc1ccc(cc1)[S](N)(=O)=O)c2ccc(cc2)[CH](Nc3ccc(cc3)[S](N)(=O)=O)[P](=O)(OC)OC"                                                                                                                       
XNF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COP(=O)([C@@H](c1ccc(cc1)[C@@H](Nc2ccc(cc2)S(=O)(=O)N)P(=O)(OC)OC)Nc3ccc(cc3)S(=O)(=O)N)OC"                                                                                                                           
XNF SMILES           "OpenEye OEToolkits" 2.0.7 "COP(=O)(C(c1ccc(cc1)C(Nc2ccc(cc2)S(=O)(=O)N)P(=O)(OC)OC)Nc3ccc(cc3)S(=O)(=O)N)OC"                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           XNF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[[(~{S})-dimethoxyphosphoryl-[4-[(~{S})-dimethoxyphosphoryl-[(4-sulfamoylphenyl)amino]methyl]phenyl]methyl]amino]benzenesulfonamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XNF "Create component" 2023-11-06 PDBE 
XNF "Initial release"  2024-11-13 RCSB 
# 
