data_X5F
# 
_chem_comp.id                                    X5F 
_chem_comp.name                                  "2-[[(2~{R})-1-azanyl-5-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]carbamoyl]-6-[2-[2-[(4-sulfamoylphenyl)carbonylamino]ethoxy]ethylamino]benzoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H29 N5 O10 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-28 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        579.580 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X5F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EYL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X5F C02  C1  C 0 1 N N N 26.542 9.061  14.589 4.839   0.377  -0.057 C02  X5F 1  
X5F C04  C2  C 0 1 N N R 29.081 9.049  14.833 6.872   -0.802 -0.700 C04  X5F 2  
X5F C05  C3  C 0 1 N N N 29.665 9.368  13.460 7.960   0.236  -0.611 C05  X5F 3  
X5F C08  C4  C 0 1 N N N 30.058 9.260  15.997 7.457   -2.181 -0.389 C08  X5F 4  
X5F C09  C5  C 0 1 N N N 29.775 8.331  17.177 6.383   -3.250 -0.600 C09  X5F 5  
X5F C10  C6  C 0 1 N N N 28.656 8.867  18.070 6.959   -4.609 -0.294 C10  X5F 6  
X5F C13  C7  C 0 1 Y N N 25.229 9.776  14.919 3.775   0.693  0.920  C13  X5F 7  
X5F C14  C8  C 0 1 Y N N 24.162 9.820  14.022 2.746   1.595  0.581  C14  X5F 8  
X5F C15  C9  C 0 1 N N N 24.248 9.136  12.649 2.723   2.229  -0.749 C15  X5F 9  
X5F C18  C10 C 0 1 Y N N 23.001 10.494 14.379 1.746   1.883  1.518  C18  X5F 10 
X5F C20  C11 C 0 1 N N N 20.499 10.419 13.947 -0.318  3.069  2.180  C20  X5F 11 
X5F C21  C12 C 0 1 N N N 20.318 9.180  14.827 -1.311  4.067  1.579  C21  X5F 12 
X5F C23  C13 C 0 1 N N N 19.125 7.853  13.294 -2.945  4.311  -0.157 C23  X5F 13 
X5F C24  C14 C 0 1 N N N 19.261 6.549  12.528 -3.607  3.560  -1.315 C24  X5F 14 
X5F C26  C15 C 0 1 N N N 17.323 5.457  13.635 -5.055  1.626  -1.630 C26  X5F 15 
X5F C27  C16 C 0 1 Y N N 16.817 4.272  14.412 -5.837  0.490  -1.098 C27  X5F 16 
X5F C28  C17 C 0 1 Y N N 17.672 3.250  14.795 -5.885  0.254  0.277  C28  X5F 17 
X5F C29  C18 C 0 1 Y N N 17.197 2.165  15.516 -6.616  -0.808 0.767  C29  X5F 18 
X5F C30  C19 C 0 1 Y N N 15.861 2.117  15.800 -7.302  -1.639 -0.102 C30  X5F 19 
X5F C35  C20 C 0 1 Y N N 15.011 3.123  15.411 -7.259  -1.411 -1.466 C35  X5F 20 
X5F C36  C21 C 0 1 Y N N 15.480 4.213  14.705 -6.536  -0.349 -1.968 C36  X5F 21 
X5F C38  C22 C 0 1 Y N N 22.910 11.120 15.615 1.778   1.278  2.772  C38  X5F 22 
X5F C39  C23 C 0 1 Y N N 23.971 11.072 16.502 2.789   0.398  3.095  C39  X5F 23 
X5F C40  C24 C 0 1 Y N N 25.131 10.405 16.151 3.782   0.099  2.176  C40  X5F 24 
X5F N03  N1  N 0 1 N N N 27.779 9.649  15.091 5.818   -0.489 0.269  N03  X5F 25 
X5F N06  N2  N 0 1 N N N 30.552 8.410  12.822 9.039   0.152  -1.414 N06  X5F 26 
X5F N19  N3  N 0 1 N N N 21.872 10.553 13.463 0.727   2.770  1.198  N19  X5F 27 
X5F N25  N4  N 0 1 N N N 18.696 5.443  13.289 -4.382  2.434  -0.788 N25  X5F 28 
X5F N32  N5  N 0 1 N N N 15.805 -0.607 15.961 -9.766  -2.440 0.825  N32  X5F 29 
X5F O01  O1  O 0 1 N N N 26.559 8.063  13.950 4.828   0.896  -1.157 O01  X5F 30 
X5F O07  O2  O 0 1 N N N 29.392 10.387 12.914 7.865   1.148  0.183  O07  X5F 31 
X5F O11  O3  O 0 1 N N N 28.858 9.852  18.833 6.193   -5.705 -0.411 O11  X5F 32 
X5F O12  O4  O 0 1 N N N 27.522 8.319  18.032 8.111   -4.712 0.057  O12  X5F 33 
X5F O16  O5  O 0 1 N N N 24.789 9.734  11.681 3.290   3.288  -0.927 O16  X5F 34 
X5F O17  O6  O 0 1 N N N 23.778 7.980  12.475 2.072   1.633  -1.768 O17  X5F 35 
X5F O22  O7  O 0 1 N N N 20.300 8.026  14.026 -1.990  3.459  0.478  O22  X5F 36 
X5F O33  O8  O 0 1 N N N 15.761 0.872  18.066 -8.342  -3.936 -0.525 O33  X5F 37 
X5F O34  O9  O 0 1 N N N 13.810 0.806  16.614 -7.672  -3.308 1.799  O34  X5F 38 
X5F O37  O10 O 0 1 N N N 16.603 6.368  13.362 -5.020  1.832  -2.828 O37  X5F 39 
X5F S31  S1  S 0 1 N N N 15.222 0.724  16.699 -8.233  -2.993 0.533  S31  X5F 40 
X5F H041 H1  H 0 0 N N N 28.903 7.964  14.814 6.452   -0.804 -1.706 H041 X5F 41 
X5F H082 H2  H 0 0 N N N 31.080 9.072  15.637 8.299   -2.377 -1.053 H082 X5F 42 
X5F H081 H3  H 0 0 N N N 29.976 10.302 16.341 7.797   -2.207 0.646  H081 X5F 43 
X5F H091 H4  H 0 0 N N N 29.479 7.345  16.790 5.541   -3.055 0.064  H091 X5F 44 
X5F H092 H5  H 0 0 N N N 30.691 8.230  17.777 6.043   -3.225 -1.635 H092 X5F 45 
X5F H201 H6  H 0 0 N N N 20.241 11.312 14.535 0.135   3.500  3.072  H201 X5F 46 
X5F H202 H7  H 0 0 N N N 19.824 10.342 13.082 -0.842  2.151  2.445  H202 X5F 47 
X5F H212 H8  H 0 0 N N N 21.151 9.115  15.542 -2.038  4.358  2.338  H212 X5F 48 
X5F H211 H9  H 0 0 N N N 19.368 9.258  15.377 -0.775  4.950  1.233  H211 X5F 49 
X5F H231 H10 H 0 0 N N N 18.991 8.690  12.593 -2.443  5.199  -0.540 H231 X5F 50 
X5F H232 H11 H 0 0 N N N 18.262 7.803  13.974 -3.706  4.607  0.566  H232 X5F 51 
X5F H241 H12 H 0 0 N N N 20.326 6.350  12.340 -4.270  4.236  -1.854 H241 X5F 52 
X5F H242 H13 H 0 0 N N N 18.729 6.636  11.569 -2.839  3.187  -1.992 H242 X5F 53 
X5F H281 H14 H 0 0 N N N 18.718 3.299  14.529 -5.350  0.902  0.956  H281 X5F 54 
X5F H291 H15 H 0 0 N N N 17.863 1.381  15.844 -6.653  -0.991 1.830  H291 X5F 55 
X5F H351 H16 H 0 0 N N N 13.962 3.061  15.661 -7.796  -2.063 -2.138 H351 X5F 56 
X5F H361 H17 H 0 0 N N N 14.810 5.000  14.392 -6.507  -0.169 -3.033 H361 X5F 57 
X5F H381 H18 H 0 0 N N N 22.007 11.647 15.885 1.007   1.500  3.495  H381 X5F 58 
X5F H391 H19 H 0 0 N N N 23.894 11.554 17.465 2.804   -0.065 4.070  H391 X5F 59 
X5F H401 H20 H 0 0 N N N 25.963 10.374 16.839 4.566   -0.596 2.439  H401 X5F 60 
X5F H031 H21 H 0 0 N N N 27.732 10.490 15.629 5.825   -0.906 1.145  H031 X5F 61 
X5F H061 H22 H 0 0 N N N 30.935 8.607  11.920 9.116   -0.577 -2.049 H061 X5F 62 
X5F H062 H23 H 0 0 N N N 30.779 7.553  13.285 9.740   0.821  -1.357 H062 X5F 63 
X5F H191 H24 H 0 0 N N N 22.010 9.822  12.795 0.706   3.190  0.324  H191 X5F 64 
X5F H251 H25 H 0 0 N N N 19.276 4.677  13.566 -4.410  2.270  0.168  H251 X5F 65 
X5F H1   H26 H 0 1 N N N 15.472 -1.423 16.433 -10.522 -3.044 0.754  H1   X5F 66 
X5F H322 H27 H 0 0 N N N 15.497 -0.623 15.010 -9.909  -1.512 1.067  H322 X5F 67 
X5F H2   H28 H 0 1 N N N 28.060 10.055 19.307 6.607   -6.554 -0.204 H2   X5F 68 
X5F H3   H29 H 0 1 N N N 23.913 7.715  11.573 2.085   2.087  -2.622 H3   X5F 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X5F O16 C15  DOUB N N 1  
X5F O17 C15  SING N N 2  
X5F C24 N25  SING N N 3  
X5F C24 C23  SING N N 4  
X5F C15 C14  SING N N 5  
X5F N06 C05  SING N N 6  
X5F O07 C05  DOUB N N 7  
X5F N25 C26  SING N N 8  
X5F C23 O22  SING N N 9  
X5F O37 C26  DOUB N N 10 
X5F C05 C04  SING N N 11 
X5F N19 C20  SING N N 12 
X5F N19 C18  SING N N 13 
X5F C26 C27  SING N N 14 
X5F C20 C21  SING N N 15 
X5F O01 C02  DOUB N N 16 
X5F C14 C18  DOUB Y N 17 
X5F C14 C13  SING Y N 18 
X5F O22 C21  SING N N 19 
X5F C18 C38  SING Y N 20 
X5F C27 C36  DOUB Y N 21 
X5F C27 C28  SING Y N 22 
X5F C02 C13  SING N N 23 
X5F C02 N03  SING N N 24 
X5F C36 C35  SING Y N 25 
X5F C28 C29  DOUB Y N 26 
X5F C04 N03  SING N N 27 
X5F C04 C08  SING N N 28 
X5F C13 C40  DOUB Y N 29 
X5F C35 C30  DOUB Y N 30 
X5F C29 C30  SING Y N 31 
X5F C38 C39  DOUB Y N 32 
X5F C30 S31  SING N N 33 
X5F N32 S31  SING N N 34 
X5F C08 C09  SING N N 35 
X5F C40 C39  SING Y N 36 
X5F O34 S31  DOUB N N 37 
X5F S31 O33  DOUB N N 38 
X5F C09 C10  SING N N 39 
X5F O12 C10  DOUB N N 40 
X5F C10 O11  SING N N 41 
X5F C04 H041 SING N N 42 
X5F C08 H082 SING N N 43 
X5F C08 H081 SING N N 44 
X5F C09 H091 SING N N 45 
X5F C09 H092 SING N N 46 
X5F C20 H201 SING N N 47 
X5F C20 H202 SING N N 48 
X5F C21 H212 SING N N 49 
X5F C21 H211 SING N N 50 
X5F C23 H231 SING N N 51 
X5F C23 H232 SING N N 52 
X5F C24 H241 SING N N 53 
X5F C24 H242 SING N N 54 
X5F C28 H281 SING N N 55 
X5F C29 H291 SING N N 56 
X5F C35 H351 SING N N 57 
X5F C36 H361 SING N N 58 
X5F C38 H381 SING N N 59 
X5F C39 H391 SING N N 60 
X5F C40 H401 SING N N 61 
X5F N03 H031 SING N N 62 
X5F N06 H061 SING N N 63 
X5F N06 H062 SING N N 64 
X5F N19 H191 SING N N 65 
X5F N25 H251 SING N N 66 
X5F N32 H1   SING N N 67 
X5F N32 H322 SING N N 68 
X5F O11 H2   SING N N 69 
X5F O17 H3   SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X5F SMILES           ACDLabs              12.01 "O=S(N)(=O)c1ccc(cc1)C(=O)NCCOCCNc1cccc(C(=O)NC(CCC(=O)O)C(N)=O)c1C(=O)O"                                                                                                                                                               
X5F InChI            InChI                1.06  "InChI=1S/C24H29N5O10S/c25-21(32)18(8-9-19(30)31)29-23(34)16-2-1-3-17(20(16)24(35)36)27-10-12-39-13-11-28-22(33)14-4-6-15(7-5-14)40(26,37)38/h1-7,18,27H,8-13H2,(H2,25,32)(H,28,33)(H,29,34)(H,30,31)(H,35,36)(H2,26,37,38)/t18-/m1/s1" 
X5F InChIKey         InChI                1.06  BGBYSJKQYBBRTL-GOSISDBHSA-N                                                                                                                                                                                                             
X5F SMILES_CANONICAL CACTVS               3.385 "NC(=O)[C@@H](CCC(O)=O)NC(=O)c1cccc(NCCOCCNC(=O)c2ccc(cc2)[S](N)(=O)=O)c1C(O)=O"                                                                                                                                                        
X5F SMILES           CACTVS               3.385 "NC(=O)[CH](CCC(O)=O)NC(=O)c1cccc(NCCOCCNC(=O)c2ccc(cc2)[S](N)(=O)=O)c1C(O)=O"                                                                                                                                                          
X5F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)NCCOCCNC(=O)c2ccc(cc2)S(=O)(=O)N)C(=O)O)C(=O)N[C@H](CCC(=O)O)C(=O)N"                                                                                                                                                       
X5F SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)NCCOCCNC(=O)c2ccc(cc2)S(=O)(=O)N)C(=O)O)C(=O)NC(CCC(=O)O)C(=O)N"                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X5F "SYSTEMATIC NAME" ACDLabs              12.01 "2-{[(2R)-1-amino-4-carboxy-1-oxobutan-2-yl]carbamoyl}-6-({2-[2-(4-sulfamoylbenzamido)ethoxy]ethyl}amino)benzoic acid (non-preferred name)"             
X5F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[[(2~{R})-1-azanyl-5-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]carbamoyl]-6-[2-[2-[(4-sulfamoylphenyl)carbonylamino]ethoxy]ethylamino]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X5F "Create component" 2022-10-28 RCSB 
X5F "Initial release"  2023-02-22 RCSB 
# 
