data_X1F
# 
_chem_comp.id                                    X1F 
_chem_comp.name                                  "5-acetamido-7,9-di-O-acetyl-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 N O11" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-18 
_chem_comp.pdbx_modified_date                    2024-08-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        393.343 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X1F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UM0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X1F C4  C1  C 0 1 N N S N N N 15.874 19.894 52.069 3.226  0.047  -0.068 C4  X1F 1  
X1F C5  C2  C 0 1 N N R N N N 16.927 18.943 51.647 1.869  -0.663 -0.043 C5  X1F 2  
X1F C6  C3  C 0 1 N N R N N N 18.268 19.393 52.222 0.765  0.369  0.203  C6  X1F 3  
X1F C11 C4  C 0 1 N N N N N N 16.271 16.531 49.977 2.341  -3.915 1.922  C11 X1F 4  
X1F C7  C5  C 0 1 N N R N N N 19.381 18.597 51.770 -0.598 -0.324 0.170  C7  X1F 5  
X1F C8  C6  C 0 1 N N R N N N 20.550 18.627 52.801 -1.706 0.724  0.291  C8  X1F 6  
X1F C9  C7  C 0 1 N N N N N N 21.646 17.647 52.391 -3.070 0.031  0.258  C9  X1F 7  
X1F C10 C8  C 0 1 N N N N N N 16.704 17.854 49.322 2.353  -2.892 0.815  C10 X1F 8  
X1F C3  C9  C 0 1 N N N N N N 15.770 20.072 53.512 3.199  1.137  -1.144 C3  X1F 9  
X1F C1  C10 C 0 1 N N N N N N 16.904 20.284 55.633 2.272  2.775  0.472  C1  X1F 10 
X1F C2  C11 C 0 1 N N R N N N 16.819 19.470 54.338 2.044  2.100  -0.856 C2  X1F 11 
X1F CAF C12 C 0 1 N N N N N N 23.663 16.010 51.472 -6.532 1.567  0.219  CAF X1F 12 
X1F CAG C13 C 0 1 N N N N N N 23.207 17.235 50.664 -5.387 0.586  0.225  CAG X1F 13 
X1F CAH C14 C 0 1 N N N N N N 18.481 14.832 51.754 -1.708 -2.944 -2.330 CAH X1F 14 
X1F CAI C15 C 0 1 N N N N N N 18.764 16.258 52.248 -1.509 -2.147 -1.067 CAI X1F 15 
X1F N5  N1  N 0 1 N N N N N N 17.019 19.018 50.152 1.857  -1.658 1.033  N5  X1F 16 
X1F O10 O1  O 0 1 N N N N N N 16.783 17.933 48.147 2.810  -3.179 -0.271 O10 X1F 17 
X1F O1A O2  O 0 1 N N N N N N 18.015 20.732 56.019 2.278  3.981  0.544  O1A X1F 18 
X1F O1B O3  O 0 1 N N N N N N 15.866 20.509 56.310 2.468  2.036  1.575  O1B X1F 19 
X1F O3  O4  O 0 1 N N N N N N 16.439 18.153 54.652 1.978  3.087  -1.887 O3  X1F 20 
X1F O4  O5  O 0 1 N N N N N N 14.571 19.454 51.534 4.256  -0.896 -0.369 O4  X1F 21 
X1F O6  O6  O 0 1 N N N N N N 18.182 19.430 53.748 0.816  1.370  -0.816 O6  X1F 22 
X1F O7  O7  O 0 1 N N N N N N 19.020 17.279 51.308 -0.746 -1.042 -1.083 O7  X1F 23 
X1F O8  O8  O 0 1 N N N N N N 21.076 19.902 52.843 -1.561 1.431  1.524  O8  X1F 24 
X1F O9  O9  O 0 1 N N N N N N 22.234 18.115 51.203 -4.122 1.032  0.253  O9  X1F 25 
X1F OBJ O10 O 0 1 N N N N N N 23.667 17.446 49.589 -5.609 -0.601 0.205  OBJ X1F 26 
X1F OBK O11 O 0 1 N N N N N N 18.762 16.473 53.410 -2.035 -2.502 -0.039 OBK X1F 27 
X1F H1  H1  H 0 1 N N N N N N 16.107 20.872 51.622 3.418  0.500  0.905  H1  X1F 28 
X1F H2  H2  H 0 1 N N N N N N 16.692 17.919 51.974 1.699  -1.158 -0.999 H2  X1F 29 
X1F H3  H3  H 0 1 N N N N N N 18.431 20.427 51.885 0.913  0.834  1.178  H3  X1F 30 
X1F H4  H4  H 0 1 N N N N N N 16.079 15.780 49.196 1.411  -4.481 1.883  H4  X1F 31 
X1F H5  H5  H 0 1 N N N N N N 17.071 16.172 50.642 3.185  -4.594 1.798  H5  X1F 32 
X1F H6  H6  H 0 1 N N N N N N 15.354 16.694 50.562 2.420  -3.410 2.884  H6  X1F 33 
X1F H7  H7  H 0 1 N N N N N N 19.780 19.120 50.889 -0.669 -1.026 1.001  H7  X1F 34 
X1F H8  H8  H 0 1 N N N N N N 20.156 18.330 53.784 -1.635 1.426  -0.540 H8  X1F 35 
X1F H9  H9  H 0 1 N N N N N N 21.211 16.651 52.223 -3.145 -0.579 -0.642 H9  X1F 36 
X1F H10 H10 H 0 1 N N N N N N 22.406 17.586 53.184 -3.176 -0.604 1.138  H10 X1F 37 
X1F H11 H11 H 0 1 N N N N N N 15.770 21.153 53.713 4.141  1.684  -1.132 H11 X1F 38 
X1F H12 H12 H 0 1 N N N N N N 14.810 19.640 53.830 3.056  0.679  -2.123 H12 X1F 39 
X1F H13 H13 H 0 1 N N N N N N 24.415 15.450 50.897 -6.139 2.583  0.240  H13 X1F 40 
X1F H14 H14 H 0 1 N N N N N N 24.102 16.342 52.424 -7.126 1.425  -0.684 H14 X1F 41 
X1F H15 H15 H 0 1 N N N N N N 22.798 15.361 51.674 -7.157 1.401  1.096  H15 X1F 42 
X1F H16 H16 H 0 1 N N N N N N 18.305 14.173 52.617 -2.582 -2.569 -2.862 H16 X1F 43 
X1F H17 H17 H 0 1 N N N N N N 17.590 14.838 51.109 -0.827 -2.846 -2.964 H17 X1F 44 
X1F H18 H18 H 0 1 N N N N N N 19.345 14.464 51.182 -1.859 -3.993 -2.077 H18 X1F 45 
X1F H19 H19 H 0 1 N N N N N N 17.299 19.874 49.717 1.492  -1.428 1.902  H19 X1F 46 
X1F H20 H20 H 0 1 N N N N N N 16.092 21.026 57.075 2.610  2.513  2.404  H20 X1F 47 
X1F H21 H21 H 0 1 N N N N N N 17.111 17.749 55.188 1.267  3.732  -1.769 H21 X1F 48 
X1F H22 H22 H 0 1 N N N N N N 13.895 20.064 51.805 5.142  -0.512 -0.407 H22 X1F 49 
X1F H23 H23 H 0 1 N N N N N N 21.790 19.930 53.469 -1.614 0.868  2.309  H23 X1F 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X1F O10 C10 DOUB N N 1  
X1F C10 C11 SING N N 2  
X1F C10 N5  SING N N 3  
X1F OBJ CAG DOUB N N 4  
X1F N5  C5  SING N N 5  
X1F CAG O9  SING N N 6  
X1F CAG CAF SING N N 7  
X1F O9  C9  SING N N 8  
X1F O7  C7  SING N N 9  
X1F O7  CAI SING N N 10 
X1F O4  C4  SING N N 11 
X1F C5  C4  SING N N 12 
X1F C5  C6  SING N N 13 
X1F CAH CAI SING N N 14 
X1F C7  C6  SING N N 15 
X1F C7  C8  SING N N 16 
X1F C4  C3  SING N N 17 
X1F C6  O6  SING N N 18 
X1F CAI OBK DOUB N N 19 
X1F C9  C8  SING N N 20 
X1F C8  O8  SING N N 21 
X1F C3  C2  SING N N 22 
X1F O6  C2  SING N N 23 
X1F C2  O3  SING N N 24 
X1F C2  C1  SING N N 25 
X1F C1  O1A DOUB N N 26 
X1F C1  O1B SING N N 27 
X1F C4  H1  SING N N 28 
X1F C5  H2  SING N N 29 
X1F C6  H3  SING N N 30 
X1F C11 H4  SING N N 31 
X1F C11 H5  SING N N 32 
X1F C11 H6  SING N N 33 
X1F C7  H7  SING N N 34 
X1F C8  H8  SING N N 35 
X1F C9  H9  SING N N 36 
X1F C9  H10 SING N N 37 
X1F C3  H11 SING N N 38 
X1F C3  H12 SING N N 39 
X1F CAF H13 SING N N 40 
X1F CAF H14 SING N N 41 
X1F CAF H15 SING N N 42 
X1F CAH H16 SING N N 43 
X1F CAH H17 SING N N 44 
X1F CAH H18 SING N N 45 
X1F N5  H19 SING N N 46 
X1F O1B H20 SING N N 47 
X1F O3  H21 SING N N 48 
X1F O4  H22 SING N N 49 
X1F O8  H23 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X1F SMILES           ACDLabs              12.01 "OC(=O)C1(O)CC(O)C(NC(C)=O)C(O1)C(OC(C)=O)C(O)COC(C)=O"                                                                                                                        
X1F InChI            InChI                1.06  "InChI=1S/C15H23NO11/c1-6(17)16-11-9(20)4-15(24,14(22)23)27-13(11)12(26-8(3)19)10(21)5-25-7(2)18/h9-13,20-21,24H,4-5H2,1-3H3,(H,16,17)(H,22,23)/t9-,10+,11+,12+,13+,15+/m0/s1" 
X1F InChIKey         InChI                1.06  NIHNZVQGPXTJRU-FSTWUICMSA-N                                                                                                                                                    
X1F SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](OC(C)=O)[C@H](O)COC(C)=O)C(O)=O"                                                                                                
X1F SMILES           CACTVS               3.385 "CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](OC(C)=O)[CH](O)COC(C)=O)C(O)=O"                                                                                                         
X1F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](COC(=O)C)O)OC(=O)C)(C(=O)O)O)O"                                                                                               
X1F SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(CC(OC1C(C(COC(=O)C)O)OC(=O)C)(C(=O)O)O)O"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X1F "SYSTEMATIC NAME" ACDLabs              12.01 "5-acetamido-7,9-di-O-acetyl-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid"                                        
X1F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{R},2~{R})-1,3-diacetyloxy-2-oxidanyl-propyl]-2,4-bis(oxidanyl)oxane-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X1F "Create component" 2023-10-18 RCSB 
X1F "Initial release"  2024-09-04 RCSB 
# 
