data_WKF
# 
_chem_comp.id                                    WKF 
_chem_comp.name                                  "4-[4-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]butylamino]-~{N}1,~{N}1'-di(quinolin-8-yl)cyclohexane-1,1-dicarboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H39 N7 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-06 
_chem_comp.pdbx_modified_date                    2024-02-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        637.794 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WKF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QQ3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WKF N3  N1  N 0 1 N N N N N N 21.920 -37.352 20.815 2.865   -1.153 -0.057 N3  WKF 1  
WKF C4  C1  C 0 1 Y N N N N N 22.922 -36.910 21.680 3.226   -2.452 -0.422 C4  WKF 2  
WKF C5  C2  C 0 1 Y N N N N N 24.219 -37.371 21.684 2.444   -3.169 -1.299 C5  WKF 3  
WKF C6  C3  C 0 1 Y N N N N N 25.174 -36.768 22.484 2.792   -4.465 -1.671 C6  WKF 4  
WKF C7  C4  C 0 1 Y N N N N N 24.856 -35.712 23.285 3.914   -5.058 -1.178 C7  WKF 5  
WKF C8  C5  C 0 1 Y N N N N N 23.534 -35.201 23.325 4.739   -4.359 -0.281 C8  WKF 6  
WKF C13 C6  C 0 1 Y N N N N N 23.082 -34.203 24.216 5.905   -4.944 0.248  C13 WKF 7  
WKF C15 C7  C 0 1 N N N N N N 20.157 -37.123 18.645 0.723   1.560  -1.489 C15 WKF 8  
WKF C17 C8  C 0 1 N N N N N N 21.340 -37.262 16.467 -1.071  0.778  0.065  C17 WKF 9  
WKF C20 C9  C 0 1 N N N N N N 22.282 -35.005 13.497 -4.719  -0.148 -0.092 C20 WKF 10 
WKF C21 C10 C 0 1 N N N N N N 22.982 -33.850 14.202 -5.955  0.651  -0.512 C21 WKF 11 
WKF C22 C11 C 0 1 N N N N N N 24.204 -33.333 13.467 -7.200  -0.229 -0.380 C22 WKF 12 
WKF C26 C12 C 0 1 N N R N N N 26.570 -30.292 14.029 -10.939 0.423  -0.313 C26 WKF 13 
WKF C28 C13 C 0 1 N N S N N N 26.291 -31.787 13.684 -9.691  -0.324 -0.798 C28 WKF 14 
WKF C11 C14 C 0 1 Y N N N N N 20.884 -34.534 23.440 6.266   -2.914 1.454  C11 WKF 15 
WKF C12 C15 C 0 1 Y N N N N N 21.762 -33.876 24.271 6.660   -4.206 1.115  C12 WKF 16 
WKF C14 C16 C 0 1 N N N N N N 20.736 -38.492 19.082 1.787   1.023  -0.531 C14 WKF 17 
WKF C16 C17 C 0 1 N N N N N N 21.043 -36.366 17.655 -0.545  0.712  -1.370 C16 WKF 18 
WKF C19 C18 C 0 1 N N N N N N 21.342 -35.739 14.430 -3.474  0.731  -0.224 C19 WKF 19 
WKF C2  C19 C 0 1 N N N N N N 22.009 -38.276 19.855 2.105   -0.408 -0.884 C2  WKF 20 
WKF C23 C20 C 0 1 N N S N N N 24.879 -32.163 14.168 -8.435  0.570  -0.800 C23 WKF 21 
WKF C25 C21 C 0 1 N N N N N N 25.329 -29.669 14.683 -10.639 1.889  0.057  C25 WKF 22 
WKF C30 C22 C 0 1 N N N N N N 26.849 -30.627 11.731 -10.500 -1.317 1.110  C30 WKF 23 
WKF C32 C23 C 0 1 N N N N N N 22.060 -38.524 16.898 -0.006  0.241  1.023  C32 WKF 24 
WKF C33 C24 C 0 1 N N N N N N 21.147 -39.310 17.837 1.262   1.089  0.905  C33 WKF 25 
WKF C34 C25 C 0 1 N N N N N N 19.732 -39.221 19.974 3.036   1.858  -0.648 C34 WKF 26 
WKF C36 C26 C 0 1 Y N N N N N 18.464 -39.065 22.093 5.177   2.499  0.163  C36 WKF 27 
WKF C37 C27 C 0 1 Y N N N N N 18.417 -38.348 23.331 6.455   2.008  0.510  C37 WKF 28 
WKF C39 C28 C 0 1 Y N N N N N 19.275 -36.698 24.681 7.812   0.276  1.203  C39 WKF 29 
WKF C40 C29 C 0 1 Y N N N N N 18.396 -36.993 25.707 8.946   1.085  1.175  C40 WKF 30 
WKF C41 C30 C 0 1 Y N N N N N 17.500 -38.004 25.529 8.839   2.396  0.806  C41 WKF 31 
WKF C42 C31 C 0 1 Y N N N N N 17.478 -38.728 24.318 7.565   2.886  0.460  C42 WKF 32 
WKF C43 C32 C 0 1 Y N N N N N 16.608 -39.809 24.045 7.380   4.222  0.068  C43 WKF 33 
WKF C44 C33 C 0 1 Y N N N N N 16.676 -40.474 22.853 6.136   4.667  -0.261 C44 WKF 34 
WKF C45 C34 C 0 1 Y N N N N N 17.593 -40.112 21.878 5.035   3.815  -0.215 C45 WKF 35 
WKF C9  C35 C 0 1 Y N N N N N 22.556 -35.812 22.515 4.399   -3.038 0.102  C9  WKF 36 
WKF N10 N2  N 0 1 Y N N N N N 21.233 -35.474 22.577 5.183   -2.369 0.952  N10 WKF 37 
WKF N18 N3  N 0 1 N N N N N N 22.133 -36.536 15.413 -2.288  -0.036 0.179  N18 WKF 38 
WKF N27 N4  N 0 1 N N N N N N 26.957 -29.733 12.743 -11.353 -0.306 0.896  N27 WKF 39 
WKF N29 N5  N 0 1 N N N N N N 26.483 -31.821 12.243 -9.516  -1.402 0.188  N29 WKF 40 
WKF N35 N6  N 0 1 N N N N N N 19.415 -38.611 21.147 4.065   1.653  0.198  N35 WKF 41 
WKF N38 N7  N 0 1 Y N N N N N 19.311 -37.333 23.519 6.628   0.737  0.880  N38 WKF 42 
WKF O1  O1  O 0 1 N N N N N N 23.020 -38.916 19.602 1.676   -0.888 -1.911 O1  WKF 43 
WKF O31 O2  O 0 1 N N N N N N 27.032 -30.393 10.540 -10.600 -2.087 2.046  O31 WKF 44 
WKF O46 O3  O 0 1 N N N N N N 19.265 -40.297 19.628 3.115   2.715  -1.503 O46 WKF 45 
WKF S24 S1  S 0 1 N N N N N N 23.955 -30.598 13.968 -8.845  1.847  0.460  S24 WKF 46 
WKF H1  H1  H 0 1 N N N N N N 21.024 -36.923 20.928 3.159   -0.788 0.792  H1  WKF 47 
WKF H2  H2  H 0 1 N N N N N N 24.493 -38.208 21.059 1.549   -2.721 -1.704 H2  WKF 48 
WKF H3  H3  H 0 1 N N N N N N 26.188 -37.140 22.473 2.162   -5.008 -2.360 H3  WKF 49 
WKF H4  H4  H 0 1 N N N N N N 25.621 -35.258 23.897 4.170   -6.064 -1.476 H4  WKF 50 
WKF H5  H5  H 0 1 N N N N N N 23.788 -33.696 24.857 6.195   -5.947 -0.026 H5  WKF 51 
WKF H6  H6  H 0 1 N N N N N N 20.027 -36.499 19.542 0.493   2.595  -1.234 H6  WKF 52 
WKF H7  H7  H 0 1 N N N N N N 19.178 -37.295 18.173 1.097   1.513  -2.512 H7  WKF 53 
WKF H8  H8  H 0 1 N N N N N N 20.379 -37.559 16.022 -1.301  1.813  0.320  H8  WKF 54 
WKF H9  H9  H 0 1 N N N N N N 21.705 -34.609 12.648 -4.829  -0.470 0.943  H9  WKF 55 
WKF H10 H10 H 0 1 N N N N N N 23.041 -35.710 13.127 -4.616  -1.023 -0.735 H10 WKF 56 
WKF H11 H11 H 0 1 N N N N N N 23.296 -34.192 15.199 -6.058  1.525  0.131  H11 WKF 57 
WKF H12 H12 H 0 1 N N N N N N 22.265 -33.022 14.307 -5.845  0.972  -1.548 H12 WKF 58 
WKF H13 H13 H 0 1 N N N N N N 23.895 -33.007 12.463 -7.097  -1.103 -1.023 H13 WKF 59 
WKF H14 H14 H 0 1 N N N N N N 24.931 -34.154 13.379 -7.310  -0.550 0.656  H14 WKF 60 
WKF H15 H15 H 0 1 N N N N N N 27.413 -30.242 14.734 -11.724 0.378  -1.068 H15 WKF 61 
WKF H16 H16 H 0 1 N N N N N N 27.034 -32.421 14.190 -9.861  -0.738 -1.791 H16 WKF 62 
WKF H17 H17 H 0 1 N N N N N N 19.840 -34.265 23.496 6.872   -2.342 2.141  H17 WKF 63 
WKF H18 H18 H 0 1 N N N N N N 21.411 -33.116 24.953 7.561   -4.625 1.539  H18 WKF 64 
WKF H19 H19 H 0 1 N N N N N N 21.985 -36.082 18.147 -1.304  1.095  -2.053 H19 WKF 65 
WKF H20 H20 H 0 1 N N N N N N 20.521 -35.460 17.312 -0.315  -0.323 -1.626 H20 WKF 66 
WKF H21 H21 H 0 1 N N N N N N 20.717 -35.011 14.968 -3.365  1.053  -1.260 H21 WKF 67 
WKF H22 H22 H 0 1 N N N N N N 20.699 -36.413 13.845 -3.577  1.605  0.419  H22 WKF 68 
WKF H23 H23 H 0 1 N N N N N N 24.911 -32.358 15.250 -8.286  1.024  -1.780 H23 WKF 69 
WKF H24 H24 H 0 1 N N N N N N 25.250 -28.600 14.436 -10.824 2.547  -0.792 H24 WKF 70 
WKF H25 H25 H 0 1 N N N N N N 25.358 -29.791 15.776 -11.230 2.199  0.919  H25 WKF 71 
WKF H26 H26 H 0 1 N N N N N N 22.297 -39.135 16.015 -0.380  0.288  2.046  H26 WKF 72 
WKF H27 H27 H 0 1 N N N N N N 22.990 -38.259 17.422 0.224   -0.794 0.768  H27 WKF 73 
WKF H28 H28 H 0 1 N N N N N N 20.238 -39.597 17.287 2.020   0.706  1.587  H28 WKF 74 
WKF H29 H29 H 0 1 N N N N N N 21.677 -40.215 18.168 1.032   2.124  1.160  H29 WKF 75 
WKF H30 H30 H 0 1 N N N N N N 19.980 -35.895 24.838 7.912   -0.758 1.497  H30 WKF 76 
WKF H31 H31 H 0 1 N N N N N N 18.419 -36.433 26.630 9.908   0.677  1.446  H31 WKF 77 
WKF H32 H32 H 0 1 N N N N N N 16.805 -38.252 26.317 9.707   3.038  0.779  H32 WKF 78 
WKF H33 H33 H 0 1 N N N N N N 15.883 -40.112 24.786 8.223   4.896  0.029  H33 WKF 79 
WKF H34 H34 H 0 1 N N N N N N 16.002 -41.297 22.667 6.000   5.696  -0.561 H34 WKF 80 
WKF H35 H35 H 0 1 N N N N N N 17.625 -40.654 20.944 4.059   4.192  -0.481 H35 WKF 81 
WKF H36 H36 H 0 1 N N N N N N 22.658 -37.217 14.902 -2.393  -0.400 1.114  H36 WKF 82 
WKF H38 H38 H 0 1 N N N N N N 27.269 -28.791 12.619 -12.119 -0.089 1.451  H38 WKF 83 
WKF H39 H39 H 0 1 N N N N N N 26.357 -32.644 11.689 -8.810  -2.067 0.178  H39 WKF 84 
WKF H40 H40 H 0 1 N N N N N N 19.899 -37.762 21.362 4.035   0.919  0.831  H40 WKF 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WKF O31 C30 DOUB N N 1  
WKF C30 N29 SING N N 2  
WKF C30 N27 SING N N 3  
WKF N29 C28 SING N N 4  
WKF N27 C26 SING N N 5  
WKF C22 C23 SING N N 6  
WKF C22 C21 SING N N 7  
WKF C20 C21 SING N N 8  
WKF C20 C19 SING N N 9  
WKF C28 C26 SING N N 10 
WKF C28 C23 SING N N 11 
WKF S24 C23 SING N N 12 
WKF S24 C25 SING N N 13 
WKF C26 C25 SING N N 14 
WKF C19 N18 SING N N 15 
WKF N18 C17 SING N N 16 
WKF C17 C32 SING N N 17 
WKF C17 C16 SING N N 18 
WKF C32 C33 SING N N 19 
WKF C16 C15 SING N N 20 
WKF C33 C14 SING N N 21 
WKF C15 C14 SING N N 22 
WKF C14 C2  SING N N 23 
WKF C14 C34 SING N N 24 
WKF O1  C2  DOUB N N 25 
WKF O46 C34 DOUB N N 26 
WKF C2  N3  SING N N 27 
WKF C34 N35 SING N N 28 
WKF N3  C4  SING N N 29 
WKF N35 C36 SING N N 30 
WKF C4  C5  DOUB Y N 31 
WKF C4  C9  SING Y N 32 
WKF C5  C6  SING Y N 33 
WKF C45 C36 DOUB Y N 34 
WKF C45 C44 SING Y N 35 
WKF C36 C37 SING Y N 36 
WKF C6  C7  DOUB Y N 37 
WKF C9  N10 DOUB Y N 38 
WKF C9  C8  SING Y N 39 
WKF N10 C11 SING Y N 40 
WKF C44 C43 DOUB Y N 41 
WKF C7  C8  SING Y N 42 
WKF C8  C13 DOUB Y N 43 
WKF C37 N38 DOUB Y N 44 
WKF C37 C42 SING Y N 45 
WKF C11 C12 DOUB Y N 46 
WKF N38 C39 SING Y N 47 
WKF C43 C42 SING Y N 48 
WKF C13 C12 SING Y N 49 
WKF C42 C41 DOUB Y N 50 
WKF C39 C40 DOUB Y N 51 
WKF C41 C40 SING Y N 52 
WKF N3  H1  SING N N 53 
WKF C5  H2  SING N N 54 
WKF C6  H3  SING N N 55 
WKF C7  H4  SING N N 56 
WKF C13 H5  SING N N 57 
WKF C15 H6  SING N N 58 
WKF C15 H7  SING N N 59 
WKF C17 H8  SING N N 60 
WKF C20 H9  SING N N 61 
WKF C20 H10 SING N N 62 
WKF C21 H11 SING N N 63 
WKF C21 H12 SING N N 64 
WKF C22 H13 SING N N 65 
WKF C22 H14 SING N N 66 
WKF C26 H15 SING N N 67 
WKF C28 H16 SING N N 68 
WKF C11 H17 SING N N 69 
WKF C12 H18 SING N N 70 
WKF C16 H19 SING N N 71 
WKF C16 H20 SING N N 72 
WKF C19 H21 SING N N 73 
WKF C19 H22 SING N N 74 
WKF C23 H23 SING N N 75 
WKF C25 H24 SING N N 76 
WKF C25 H25 SING N N 77 
WKF C32 H26 SING N N 78 
WKF C32 H27 SING N N 79 
WKF C33 H28 SING N N 80 
WKF C33 H29 SING N N 81 
WKF C39 H30 SING N N 82 
WKF C40 H31 SING N N 83 
WKF C41 H32 SING N N 84 
WKF C43 H33 SING N N 85 
WKF C44 H34 SING N N 86 
WKF C45 H35 SING N N 87 
WKF N18 H36 SING N N 88 
WKF N27 H38 SING N N 89 
WKF N29 H39 SING N N 90 
WKF N35 H40 SING N N 91 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WKF InChI            InChI                1.06  "InChI=1S/C35H39N7O3S/c43-32(39-25-11-3-7-22-9-5-19-37-29(22)25)35(33(44)40-26-12-4-8-23-10-6-20-38-30(23)26)16-14-24(15-17-35)36-18-2-1-13-28-31-27(21-46-28)41-34(45)42-31/h3-12,19-20,24,27-28,31,36H,1-2,13-18,21H2,(H,39,43)(H,40,44)(H2,41,42,45)/t27-,28-,31-/m0/s1" 
WKF InChIKey         InChI                1.06  RCUCAUCKUVJHRT-QYDYLWNGSA-N                                                                                                                                                                                                                                                 
WKF SMILES_CANONICAL CACTVS               3.385 "O=C1N[C@H]2CS[C@@H](CCCCNC3CCC(CC3)(C(=O)Nc4cccc5cccnc45)C(=O)Nc6cccc7cccnc67)[C@H]2N1"                                                                                                                                                                                    
WKF SMILES           CACTVS               3.385 "O=C1N[CH]2CS[CH](CCCCNC3CCC(CC3)(C(=O)Nc4cccc5cccnc45)C(=O)Nc6cccc7cccnc67)[CH]2N1"                                                                                                                                                                                        
WKF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2cccnc2c(c1)NC(=O)C3(CCC(CC3)NCCCC[C@H]4[C@@H]5[C@H](CS4)NC(=O)N5)C(=O)Nc6cccc7c6nccc7"                                                                                                                                                                                
WKF SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2cccnc2c(c1)NC(=O)C3(CCC(CC3)NCCCCC4C5C(CS4)NC(=O)N5)C(=O)Nc6cccc7c6nccc7"                                                                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           WKF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[4-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]butylamino]-~{N}1,~{N}1'-di(quinolin-8-yl)cyclohexane-1,1-dicarboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WKF "Create component" 2023-10-06 PDBE 
WKF "Initial release"  2024-02-07 RCSB 
# 
