data_WJF
# 
_chem_comp.id                                    WJF 
_chem_comp.name                                  "(2R,3R,4R,5S)-1-{2-[4-(2-{[(5M)-3-chloro-5-(1,2,4-oxadiazol-3-yl)phenyl]amino}ethyl)phenyl]ethyl}-2-(hydroxymethyl)piperidine-3,4,5-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H29 Cl N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-14 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        488.964 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WJF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EGV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WJF N1  N1  N  0 1 N N N -35.447 -30.264 -68.805 6.112   0.022  -0.100 N1  WJF 1  
WJF N3  N2  N  0 1 Y N N -47.198 -25.389 -67.464 -9.146  1.794  0.633  N3  WJF 2  
WJF C4  C1  C  0 1 N N R -33.020 -30.917 -68.984 8.507   0.497  -0.299 C4  WJF 3  
WJF C5  C2  C  0 1 N N R -33.349 -32.322 -69.208 8.816   -0.674 0.639  C5  WJF 4  
WJF C6  C3  C  0 1 N N N -33.640 -28.691 -68.054 6.808   2.227  -0.903 C6  WJF 5  
WJF C7  C4  C  0 1 N N N -36.419 -29.623 -68.301 4.762   0.570  0.087  C7  WJF 6  
WJF C8  C5  C  0 1 N N N -36.653 -30.120 -66.822 3.725   -0.506 -0.243 C8  WJF 7  
WJF C10 C6  C  0 1 Y N N -39.164 -29.913 -66.801 1.693   0.676  -1.104 C10 WJF 8  
WJF C13 C7  C  0 1 Y N N -39.113 -28.147 -64.622 0.445   0.468  1.355  C13 WJF 9  
WJF C15 C8  C  0 1 N N N -41.676 -27.980 -64.681 -1.586  1.650  0.494  C15 WJF 10 
WJF C17 C9  C  0 1 Y N N -44.207 -27.355 -64.185 -5.089  0.322  0.108  C17 WJF 11 
WJF C20 C10 C  0 1 Y N N -44.792 -24.851 -65.219 -7.304  -1.278 -0.378 C20 WJF 12 
WJF C21 C11 C  0 1 Y N N -44.040 -24.946 -64.037 -6.031  -1.787 -0.553 C21 WJF 13 
WJF C22 C12 C  0 1 Y N N -43.764 -26.207 -63.535 -4.925  -0.992 -0.312 C22 WJF 14 
WJF C24 C13 C  0 1 Y N N -46.529 -26.350 -69.314 -10.951 0.784  0.333  C24 WJF 15 
WJF C1  C14 C  0 1 N N S -34.679 -32.330 -69.860 7.715   -1.729 0.504  C1  WJF 16 
WJF C11 C15 C  0 1 Y N N -40.330 -29.390 -66.283 0.423   1.192  -0.927 C11 WJF 17 
WJF C12 C16 C  0 1 Y N N -40.331 -28.502 -65.206 -0.201  1.088  0.302  C12 WJF 18 
WJF C14 C17 C  0 1 Y N N -37.913 -28.683 -65.108 1.716   -0.048 1.178  C14 WJF 19 
WJF C16 C18 C  0 1 N N N -42.449 -29.034 -63.854 -2.624  0.576  0.163  C16 WJF 20 
WJF C18 C19 C  0 1 Y N N -44.927 -27.267 -65.366 -6.364  0.838  0.290  C18 WJF 21 
WJF C19 C20 C  0 1 Y N N -45.234 -26.013 -65.882 -7.476  0.038  0.047  C19 WJF 22 
WJF C2  C21 C  0 1 N N N -35.710 -31.709 -68.857 6.361   -1.092 0.825  C2  WJF 23 
WJF C23 C22 C  0 1 Y N N -46.027 -25.981 -67.201 -8.842  0.584  0.241  C23 WJF 24 
WJF C3  C23 C  0 1 N N R -34.105 -30.153 -68.157 7.130   1.070  0.045  C3  WJF 25 
WJF C9  C24 C  0 1 Y N N -37.940 -29.559 -66.212 2.340   0.057  -0.051 C9  WJF 26 
WJF N2  N3  N  0 1 N N N -43.848 -28.647 -63.627 -3.970  1.123  0.350  N2  WJF 27 
WJF N4  N4  N  0 1 Y N N -45.607 -26.597 -68.373 -10.006 -0.076 0.044  N4  WJF 28 
WJF O1  O1  O  0 1 N N N -35.068 -33.639 -70.197 7.966   -2.800 1.417  O1  WJF 29 
WJF O2  O2  O  0 1 N N N -32.412 -32.897 -70.209 10.076  -1.248 0.287  O2  WJF 30 
WJF O3  O3  O  0 1 N N N -31.694 -30.751 -68.425 9.500   1.512  -0.139 O3  WJF 31 
WJF O4  O4  O  0 1 N N N -33.923 -28.052 -69.303 6.881   1.770  -2.255 O4  WJF 32 
WJF O5  O5  O  0 1 Y N N -47.471 -25.628 -68.747 -10.351 1.923  0.691  O5  WJF 33 
WJF CL1 CL1 CL 0 0 N N N -43.403 -23.546 -63.100 -5.819  -3.429 -1.077 CL1 WJF 34 
WJF H2  H2  H  0 1 N N N -33.010 -30.435 -69.973 8.508   0.147  -1.331 H2  WJF 35 
WJF H3  H3  H  0 1 N N N -33.350 -32.901 -68.273 8.853   -0.316 1.668  H3  WJF 36 
WJF H4  H4  H  0 1 N N N -32.559 -28.656 -67.852 5.804   2.596  -0.698 H4  WJF 37 
WJF H5  H5  H  0 1 N N N -34.181 -28.183 -67.243 7.529   3.031  -0.753 H5  WJF 38 
WJF H6  H6  H  0 1 N N N -36.188 -28.548 -68.296 4.639   0.887  1.123  H6  WJF 39 
WJF H7  H7  H  0 1 N N N -37.326 -29.801 -68.897 4.622   1.425  -0.573 H7  WJF 40 
WJF H8  H8  H  0 1 N N N -36.713 -31.218 -66.824 3.848   -0.823 -1.279 H8  WJF 41 
WJF H9  H9  H  0 1 N N N -35.801 -29.801 -66.204 3.865   -1.361 0.418  H9  WJF 42 
WJF H10 H10 H  0 1 N N N -39.192 -30.584 -67.647 2.178   0.754  -2.065 H10 WJF 43 
WJF H11 H11 H  0 1 N N N -39.096 -27.456 -63.792 -0.042  0.387  2.315  H11 WJF 44 
WJF H12 H12 H  0 1 N N N -41.488 -27.103 -64.044 -1.709  1.967  1.530  H12 WJF 45 
WJF H13 H13 H  0 1 N N N -42.297 -27.683 -65.539 -1.726  2.506  -0.166 H13 WJF 46 
WJF H14 H14 H  0 1 N N N -45.034 -23.879 -65.623 -8.165  -1.902 -0.567 H14 WJF 47 
WJF H15 H15 H  0 1 N N N -43.194 -26.301 -62.622 -3.932  -1.394 -0.449 H15 WJF 48 
WJF H16 H16 H  0 1 N N N -46.503 -26.681 -70.342 -12.015 0.605  0.289  H16 WJF 49 
WJF H17 H17 H  0 1 N N N -34.648 -31.696 -70.758 7.703   -2.115 -0.515 H17 WJF 50 
WJF H18 H18 H  0 1 N N N -41.273 -29.677 -66.725 -0.083  1.677  -1.750 H18 WJF 51 
WJF H19 H19 H  0 1 N N N -36.974 -28.427 -64.640 2.221   -0.532 2.001  H19 WJF 52 
WJF H20 H20 H  0 1 N N N -42.430 -29.992 -64.395 -2.501  0.259  -0.872 H20 WJF 53 
WJF H21 H21 H  0 1 N N N -41.952 -29.153 -62.880 -2.484  -0.280 0.824  H21 WJF 54 
WJF H22 H22 H  0 1 N N N -45.246 -28.162 -65.879 -6.492  1.859  0.620  H22 WJF 55 
WJF H23 H23 H  0 1 N N N -36.736 -31.893 -69.208 6.369   -0.719 1.849  H23 WJF 56 
WJF H24 H24 H  0 1 N N N -35.579 -32.152 -67.859 5.573   -1.837 0.716  H24 WJF 57 
WJF H25 H25 H  0 1 N N N -34.147 -30.587 -67.147 7.134   1.433  1.072  H25 WJF 58 
WJF H26 H26 H  0 1 N N N -44.009 -28.618 -62.640 -4.084  2.040  0.643  H26 WJF 59 
WJF H27 H27 H  0 1 N N N -35.922 -33.619 -70.613 7.306   -3.506 1.386  H27 WJF 60 
WJF H28 H28 H  0 1 N N N -31.534 -32.919 -69.846 10.335  -1.997 0.841  H28 WJF 61 
WJF H29 H29 H  0 1 N N N -31.518 -29.827 -68.294 10.399  1.218  -0.340 H29 WJF 62 
WJF H30 H30 H  0 1 N N N -33.644 -27.145 -69.265 6.688   2.452  -2.912 H30 WJF 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WJF O2  C5  SING N N 1  
WJF O1  C1  SING N N 2  
WJF C1  C5  SING N N 3  
WJF C1  C2  SING N N 4  
WJF C24 O5  SING Y N 5  
WJF C24 N4  DOUB Y N 6  
WJF O4  C6  SING N N 7  
WJF C5  C4  SING N N 8  
WJF C4  O3  SING N N 9  
WJF C4  C3  SING N N 10 
WJF C2  N1  SING N N 11 
WJF N1  C7  SING N N 12 
WJF N1  C3  SING N N 13 
WJF O5  N3  SING Y N 14 
WJF N4  C23 SING Y N 15 
WJF C7  C8  SING N N 16 
WJF C3  C6  SING N N 17 
WJF N3  C23 DOUB Y N 18 
WJF C23 C19 SING N N 19 
WJF C8  C9  SING N N 20 
WJF C10 C11 DOUB Y N 21 
WJF C10 C9  SING Y N 22 
WJF C11 C12 SING Y N 23 
WJF C9  C14 DOUB Y N 24 
WJF C19 C18 DOUB Y N 25 
WJF C19 C20 SING Y N 26 
WJF C18 C17 SING Y N 27 
WJF C20 C21 DOUB Y N 28 
WJF C12 C15 SING N N 29 
WJF C12 C13 DOUB Y N 30 
WJF C14 C13 SING Y N 31 
WJF C15 C16 SING N N 32 
WJF C17 N2  SING N N 33 
WJF C17 C22 DOUB Y N 34 
WJF C21 C22 SING Y N 35 
WJF C21 CL1 SING N N 36 
WJF C16 N2  SING N N 37 
WJF C4  H2  SING N N 38 
WJF C5  H3  SING N N 39 
WJF C6  H4  SING N N 40 
WJF C6  H5  SING N N 41 
WJF C7  H6  SING N N 42 
WJF C7  H7  SING N N 43 
WJF C8  H8  SING N N 44 
WJF C8  H9  SING N N 45 
WJF C10 H10 SING N N 46 
WJF C13 H11 SING N N 47 
WJF C15 H12 SING N N 48 
WJF C15 H13 SING N N 49 
WJF C20 H14 SING N N 50 
WJF C22 H15 SING N N 51 
WJF C24 H16 SING N N 52 
WJF C1  H17 SING N N 53 
WJF C11 H18 SING N N 54 
WJF C14 H19 SING N N 55 
WJF C16 H20 SING N N 56 
WJF C16 H21 SING N N 57 
WJF C18 H22 SING N N 58 
WJF C2  H23 SING N N 59 
WJF C2  H24 SING N N 60 
WJF C3  H25 SING N N 61 
WJF N2  H26 SING N N 62 
WJF O1  H27 SING N N 63 
WJF O2  H28 SING N N 64 
WJF O3  H29 SING N N 65 
WJF O4  H30 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WJF SMILES           ACDLabs              12.01 "OCC1C(O)C(O)C(O)CN1CCc1ccc(cc1)CCNc1cc(Cl)cc(c1)c1ncon1"                                                                                                                                         
WJF InChI            InChI                1.06  "InChI=1S/C24H29ClN4O5/c25-18-9-17(24-27-14-34-28-24)10-19(11-18)26-7-5-15-1-3-16(4-2-15)6-8-29-12-21(31)23(33)22(32)20(29)13-30/h1-4,9-11,14,20-23,26,30-33H,5-8,12-13H2/t20-,21+,22-,23-/m1/s1" 
WJF InChIKey         InChI                1.06  IECIOXOWPHIYDY-KAOXLYBCSA-N                                                                                                                                                                       
WJF SMILES_CANONICAL CACTVS               3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)CN1CCc2ccc(CCNc3cc(Cl)cc(c3)c4nocn4)cc2"                                                                                                                      
WJF SMILES           CACTVS               3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)CN1CCc2ccc(CCNc3cc(Cl)cc(c3)c4nocn4)cc2"                                                                                                                             
WJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCNc2cc(cc(c2)Cl)c3ncon3)CCN4C[C@@H]([C@H]([C@@H]([C@H]4CO)O)O)O"                                                                                                                       
WJF SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCNc2cc(cc(c2)Cl)c3ncon3)CCN4CC(C(C(C4CO)O)O)O"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WJF "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-1-{2-[4-(2-{[(5M)-3-chloro-5-(1,2,4-oxadiazol-3-yl)phenyl]amino}ethyl)phenyl]ethyl}-2-(hydroxymethyl)piperidine-3,4,5-triol"           
WJF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-1-[2-[4-[2-[[3-chloranyl-5-(1,2,4-oxadiazol-3-yl)phenyl]amino]ethyl]phenyl]ethyl]-2-(hydroxymethyl)piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WJF "Create component" 2022-09-14 RCSB 
WJF "Initial release"  2023-02-22 RCSB 
# 
