data_W5F
# 
_chem_comp.id                                    W5F 
_chem_comp.name                                  ALX5407 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H24 F N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-[[(3~{R})-3-(4-fluorophenyl)-3-(4-phenylphenoxy)propyl]-methyl-amino]ethanoic acid; ALX-5407; (R)-NFPS" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-20 
_chem_comp.pdbx_modified_date                    2024-03-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        393.451 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W5F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WFJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W5F C06 C1  C 0 1 N N N N N N 97.679  103.248 101.691 -2.633 0.505  0.105  C06 W5F 1  
W5F C07 C2  C 0 1 N N R N N N 96.520  103.298 102.684 -1.121 0.711  0.213  C07 W5F 2  
W5F C08 C3  C 0 1 N N N N N N 98.989  103.022 102.440 -2.967 -0.965 0.368  C08 W5F 3  
W5F C09 C4  C 0 1 Y N N N N N 96.751  104.436 103.678 -0.803 2.178  0.076  C09 W5F 4  
W5F C10 C5  C 0 1 N N N N N N 101.003 104.186 101.990 -4.757 -2.593 0.275  C10 W5F 5  
W5F C11 C6  C 0 1 N N N N N N 100.808 101.907 101.419 -5.126 -0.448 1.335  C11 W5F 6  
W5F C12 C7  C 0 1 Y N N N N N 96.777  104.182 105.039 -0.556 2.939  1.203  C12 W5F 7  
W5F C13 C8  C 0 1 Y N N N N N 96.933  105.728 103.214 -0.754 2.760  -1.177 C13 W5F 8  
W5F C14 C9  C 0 1 Y N N N N N 95.109  101.669 103.615 0.828  -0.373 -0.611 C14 W5F 9  
W5F C15 C10 C 0 1 Y N N N N N 96.984  105.219 105.933 -0.265 4.284  1.079  C15 W5F 10 
W5F C16 C11 C 0 1 Y N N N N N 97.141  106.763 104.108 -0.462 4.105  -1.304 C16 W5F 11 
W5F C17 C12 C 0 1 Y N N N N N 94.738  101.320 104.901 1.487  -1.180 -1.528 C17 W5F 12 
W5F C18 C13 C 0 1 Y N N N N N 94.177  101.624 102.593 1.489  0.075  0.525  C18 W5F 13 
W5F C19 C14 C 0 1 Y N N N N N 92.507  100.875 104.140 3.467  -1.090 -0.175 C19 W5F 14 
W5F C20 C15 C 0 1 Y N N N N N 97.166  106.509 105.468 -0.221 4.870  -0.175 C20 W5F 15 
W5F C21 C16 C 0 1 N N N N N N 102.166 104.312 101.009 -6.212 -2.767 -0.077 C21 W5F 16 
W5F C22 C17 C 0 1 Y N N N N N 93.437  100.923 105.163 2.801  -1.539 -1.314 C22 W5F 17 
W5F C23 C18 C 0 1 Y N N N N N 92.876  101.228 102.854 2.803  -0.280 0.744  C23 W5F 18 
W5F C24 C19 C 0 1 Y N N N N N 91.075  100.442 104.435 4.881  -1.475 0.059  C24 W5F 19 
W5F C25 C20 C 0 1 Y N N N N N 90.820  99.175  104.935 5.549  -1.027 1.198  C25 W5F 20 
W5F C26 C21 C 0 1 Y N N N N N 90.028  101.318 104.202 5.545  -2.289 -0.856 C26 W5F 21 
W5F C27 C22 C 0 1 Y N N N N N 89.518  98.785  105.202 6.864  -1.388 1.410  C27 W5F 22 
W5F C28 C23 C 0 1 Y N N N N N 88.725  100.929 104.469 6.860  -2.644 -0.634 C28 W5F 23 
W5F C29 C24 C 0 1 Y N N N N N 88.470  99.662  104.969 7.519  -2.192 0.495  C29 W5F 24 
W5F F01 F1  F 0 1 N N N N N N 97.371  107.531 106.349 0.064  6.185  -0.298 F01 W5F 25 
W5F N05 N1  N 0 1 N N N N N N 100.094 103.163 101.512 -4.419 -1.163 0.264  N05 W5F 26 
W5F O02 O1  O 0 1 N N N N N N 96.424  102.072 103.353 -0.466 -0.017 -0.828 O02 W5F 27 
W5F O03 O2  O 0 1 N N N N N N 103.344 104.114 101.403 -6.747 -3.997 -0.129 O03 W5F 28 
W5F O04 O3  O 0 1 N N N N N N 101.945 104.612 99.807  -6.897 -1.800 -0.312 O04 W5F 29 
W5F H1  H1  H 0 1 N N N N N N 97.731  104.200 101.142 -3.138 1.129  0.842  H1  W5F 30 
W5F H2  H2  H 0 1 N N N N N N 97.517  102.424 100.981 -2.967 0.780  -0.895 H2  W5F 31 
W5F H3  H3  H 0 1 N N N N N N 95.593  103.503 102.129 -0.773 0.353  1.181  H3  W5F 32 
W5F H4  H4  H 0 1 N N N N N N 98.997  102.010 102.872 -2.462 -1.590 -0.369 H4  W5F 33 
W5F H5  H5  H 0 1 N N N N N N 99.086  103.765 103.245 -2.633 -1.240 1.368  H5  W5F 34 
W5F H6  H6  H 0 1 N N N N N N 101.386 103.905 102.982 -4.571 -3.003 1.267  H6  W5F 35 
W5F H7  H7  H 0 1 N N N N N N 100.473 105.147 102.060 -4.141 -3.117 -0.456 H7  W5F 36 
W5F H8  H8  H 0 1 N N N N N N 100.127 101.123 101.057 -4.843 -0.867 2.301  H8  W5F 37 
W5F H9  H9  H 0 1 N N N N N N 101.649 102.014 100.718 -4.857 0.608  1.305  H9  W5F 38 
W5F H10 H10 H 0 1 N N N N N N 101.192 101.629 102.412 -6.201 -0.553 1.194  H10 W5F 39 
W5F H11 H11 H 0 1 N N N N N N 96.636  103.175 105.403 -0.591 2.482  2.181  H11 W5F 40 
W5F H12 H12 H 0 1 N N N N N N 96.913  105.928 102.153 -0.942 2.163  -2.057 H12 W5F 41 
W5F H13 H13 H 0 1 N N N N N N 97.003  105.020 106.994 -0.073 4.879  1.959  H13 W5F 42 
W5F H14 H14 H 0 1 N N N N N N 97.284  107.770 103.744 -0.424 4.559  -2.283 H14 W5F 43 
W5F H15 H15 H 0 1 N N N N N N 95.463  101.357 105.701 0.970  -1.527 -2.411 H15 W5F 44 
W5F H16 H16 H 0 1 N N N N N N 94.465  101.899 101.589 0.973  0.702  1.237  H16 W5F 45 
W5F H17 H17 H 0 1 N N N N N N 93.148  100.651 106.167 3.314  -2.167 -2.028 H17 W5F 46 
W5F H18 H18 H 0 1 N N N N N N 92.150  101.195 102.055 3.317  0.069  1.628  H18 W5F 47 
W5F H19 H19 H 0 1 N N N N N N 91.636  98.492  105.116 5.037  -0.399 1.912  H19 W5F 48 
W5F H20 H20 H 0 1 N N N N N N 90.227  102.305 103.812 5.031  -2.643 -1.738 H20 W5F 49 
W5F H21 H21 H 0 1 N N N N N N 89.319  97.798  105.592 7.382  -1.041 2.292  H21 W5F 50 
W5F H22 H22 H 0 1 N N N N N N 87.909  101.613 104.288 7.376  -3.275 -1.342 H22 W5F 51 
W5F H23 H23 H 0 1 N N N N N N 87.455  99.358  105.177 8.549  -2.471 0.665  H23 W5F 52 
W5F H25 H25 H 0 1 N N N N N N 103.945 104.229 100.676 -7.685 -4.059 -0.359 H25 W5F 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W5F O04 C21 DOUB N N 1  
W5F C21 O03 SING N N 2  
W5F C21 C10 SING N N 3  
W5F C11 N05 SING N N 4  
W5F N05 C10 SING N N 5  
W5F N05 C08 SING N N 6  
W5F C06 C08 SING N N 7  
W5F C06 C07 SING N N 8  
W5F C18 C23 DOUB Y N 9  
W5F C18 C14 SING Y N 10 
W5F C07 O02 SING N N 11 
W5F C07 C09 SING N N 12 
W5F C23 C19 SING Y N 13 
W5F C13 C09 DOUB Y N 14 
W5F C13 C16 SING Y N 15 
W5F O02 C14 SING N N 16 
W5F C14 C17 DOUB Y N 17 
W5F C09 C12 SING Y N 18 
W5F C16 C20 DOUB Y N 19 
W5F C19 C24 SING N N 20 
W5F C19 C22 DOUB Y N 21 
W5F C26 C24 DOUB Y N 22 
W5F C26 C28 SING Y N 23 
W5F C24 C25 SING Y N 24 
W5F C28 C29 DOUB Y N 25 
W5F C17 C22 SING Y N 26 
W5F C25 C27 DOUB Y N 27 
W5F C29 C27 SING Y N 28 
W5F C12 C15 DOUB Y N 29 
W5F C20 C15 SING Y N 30 
W5F C20 F01 SING N N 31 
W5F C06 H1  SING N N 32 
W5F C06 H2  SING N N 33 
W5F C07 H3  SING N N 34 
W5F C08 H4  SING N N 35 
W5F C08 H5  SING N N 36 
W5F C10 H6  SING N N 37 
W5F C10 H7  SING N N 38 
W5F C11 H8  SING N N 39 
W5F C11 H9  SING N N 40 
W5F C11 H10 SING N N 41 
W5F C12 H11 SING N N 42 
W5F C13 H12 SING N N 43 
W5F C15 H13 SING N N 44 
W5F C16 H14 SING N N 45 
W5F C17 H15 SING N N 46 
W5F C18 H16 SING N N 47 
W5F C22 H17 SING N N 48 
W5F C23 H18 SING N N 49 
W5F C25 H19 SING N N 50 
W5F C26 H20 SING N N 51 
W5F C27 H21 SING N N 52 
W5F C28 H22 SING N N 53 
W5F C29 H23 SING N N 54 
W5F O03 H25 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W5F InChI            InChI                1.06  "InChI=1S/C24H24FNO3/c1-26(17-24(27)28)16-15-23(20-7-11-21(25)12-8-20)29-22-13-9-19(10-14-22)18-5-3-2-4-6-18/h2-14,23H,15-17H2,1H3,(H,27,28)/t23-/m1/s1" 
W5F InChIKey         InChI                1.06  FDORQEIHOKEJNX-HSZRJFAPSA-N                                                                                                                              
W5F SMILES_CANONICAL CACTVS               3.385 "CN(CC[C@@H](Oc1ccc(cc1)c2ccccc2)c3ccc(F)cc3)CC(O)=O"                                                                                                    
W5F SMILES           CACTVS               3.385 "CN(CC[CH](Oc1ccc(cc1)c2ccccc2)c3ccc(F)cc3)CC(O)=O"                                                                                                      
W5F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC[C@H](c1ccc(cc1)F)Oc2ccc(cc2)c3ccccc3)CC(=O)O"                                                                                                     
W5F SMILES           "OpenEye OEToolkits" 2.0.7 "CN(CCC(c1ccc(cc1)F)Oc2ccc(cc2)c3ccccc3)CC(=O)O"                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           W5F 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[[(3~{R})-3-(4-fluorophenyl)-3-(4-phenylphenoxy)propyl]-methyl-amino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W5F "Create component" 2023-09-20 PDBJ 
W5F "Initial release"  2024-04-03 RCSB 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 W5F "2-[[(3~{R})-3-(4-fluorophenyl)-3-(4-phenylphenoxy)propyl]-methyl-amino]ethanoic acid" PDB     ? 
2 W5F ALX-5407                                                                               AUTHOR  ? 
3 W5F "(R)-NFPS"                                                                             PUBCHEM ? 
# 
