data_W0F
# 
_chem_comp.id                                    W0F 
_chem_comp.name                                  "[[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H18 N5 O14 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-08 
_chem_comp.pdbx_modified_date                    2023-12-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        537.207 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W0F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WAK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W0F C10 C1  C 0 1 Y N N N N N 193.198 211.905 292.857 3.664  0.904  1.896  C10 W0F 1  
W0F C13 C2  C 0 1 Y N N N N N 193.908 213.263 291.313 4.496  1.235  -0.111 C13 W0F 2  
W0F C15 C3  C 0 1 N N N N N N 195.063 214.024 289.398 5.763  2.225  -1.852 C15 W0F 3  
W0F C17 C4  C 0 1 N N N N N N 195.357 211.747 289.914 5.915  3.199  0.245  C17 W0F 4  
W0F C20 C5  C 0 1 N N N N N N 189.357 211.469 293.234 0.329  -2.425 -0.371 C20 W0F 5  
W0F P22 P1  P 0 1 N N N N N N 189.023 208.862 294.085 -2.214 -1.725 -0.801 P22 W0F 6  
W0F P26 P2  P 0 1 N N N N N N 187.254 208.470 296.368 -4.711 -0.169 -0.442 P26 W0F 7  
W0F P30 P3  P 0 1 N N N N N N 187.152 207.775 299.594 -6.150 2.174  0.666  P30 W0F 8  
W0F C01 C6  C 0 1 N N N N N N 187.477 213.549 293.768 3.698  -5.230 0.677  C01 W0F 9  
W0F O02 O1  O 0 1 N N N N N N 188.492 213.923 292.871 3.002  -4.114 1.235  O02 W0F 10 
W0F C03 C7  C 0 1 N N R N N N 189.823 213.744 293.291 2.659  -3.106 0.281  C03 W0F 11 
W0F C04 C8  C 0 1 N N S N N N 190.304 212.670 292.808 1.393  -2.350 0.726  C04 W0F 12 
W0F O05 O2  O 0 1 N N N N N N 191.755 212.958 293.415 1.769  -0.981 0.949  O05 W0F 13 
W0F C06 C9  C 0 1 N N R N N N 192.146 214.126 293.080 2.915  -0.717 0.112  C06 W0F 14 
W0F C07 C10 C 0 1 N N S N N N 190.750 214.722 292.729 3.757  -2.016 0.227  C07 W0F 15 
W0F O08 O3  O 0 1 N N N N N N 190.400 214.931 291.394 4.533  -2.016 1.426  O08 W0F 16 
W0F N09 N1  N 0 1 Y N N N N N 193.148 213.173 292.408 3.667  0.436  0.615  N09 W0F 17 
W0F N11 N2  N 0 1 Y N N N N N 193.990 211.137 292.066 4.441  1.945  1.981  N11 W0F 18 
W0F C12 C11 C 0 1 Y N N N N N 194.466 211.922 291.085 4.985  2.194  0.767  C12 W0F 19 
W0F N14 N3  N 0 1 N N N N N N 194.238 214.256 290.452 4.898  1.270  -1.422 N14 W0F 20 
W0F N16 N4  N 0 1 N N N N N N 195.599 212.816 289.143 6.252  3.149  -1.053 N16 W0F 21 
W0F O18 O4  O 0 1 N N N N N N 195.869 210.638 289.654 6.374  4.063  0.975  O18 W0F 22 
W0F N19 N5  N 0 1 N N N N N N 195.357 215.052 288.567 6.141  2.226  -3.168 N19 W0F 23 
W0F O21 O5  O 0 1 N N N N N N 189.807 210.083 293.250 -0.880 -1.823 0.096  O21 W0F 24 
W0F O23 O6  O 0 1 N N N N N N 189.880 207.583 294.380 -2.774 -3.205 -1.093 O23 W0F 25 
W0F O24 O7  O 0 1 N N N N N N 187.903 208.564 293.117 -1.899 -1.054 -2.082 O24 W0F 26 
W0F O25 O8  O 0 1 N N N N N N 188.265 209.420 295.478 -3.330 -0.875 -0.011 O25 W0F 27 
W0F O27 O9  O 0 1 N N N N N N 187.921 207.214 295.930 -5.877 -1.277 -0.525 O27 W0F 28 
W0F O28 O10 O 0 1 N N N N N N 185.940 208.503 295.667 -4.545 0.472  -1.766 O28 W0F 29 
W0F O29 O11 O 0 1 N N N N N N 187.250 208.674 298.095 -5.108 0.947  0.649  O29 W0F 30 
W0F O31 O12 O 0 1 N N N N N N 188.183 206.721 299.668 -6.137 2.850  -0.651 O31 W0F 31 
W0F O32 O13 O 0 1 N N N N N N 185.778 207.135 299.969 -7.630 1.617  0.968  O32 W0F 32 
W0F O33 O14 O 0 1 N N N N N N 187.580 208.557 300.786 -5.726 3.222  1.812  O33 W0F 33 
W0F H1  H1  H 0 1 N N N N N N 192.676 211.546 293.732 3.099  0.479  2.713  H1  W0F 34 
W0F H2  H2  H 0 1 N N N N N N 189.022 211.693 294.258 0.681  -1.894 -1.255 H2  W0F 35 
W0F H3  H3  H 0 1 N N N N N N 188.496 211.502 292.551 0.141  -3.468 -0.624 H3  W0F 36 
W0F H4  H4  H 0 1 N N N N N N 186.495 213.742 293.312 3.922  -5.949 1.464  H4  W0F 37 
W0F H5  H5  H 0 1 N N N N N N 187.569 212.478 294.000 3.076  -5.704 -0.083 H5  W0F 38 
W0F H6  H6  H 0 1 N N N N N N 187.573 214.134 294.695 4.628  -4.887 0.222  H6  W0F 39 
W0F H7  H7  H 0 1 N N N N N N 189.882 213.774 294.389 2.512  -3.549 -0.704 H7  W0F 40 
W0F H8  H8  H 0 1 N N N N N N 190.379 212.682 291.711 1.006  -2.785 1.648  H8  W0F 41 
W0F H9  H9  H 0 1 N N N N N N 192.631 214.711 293.875 2.606  -0.551 -0.920 H9  W0F 42 
W0F H10 H10 H 0 1 N N N N N N 190.646 215.664 293.287 4.394  -2.145 -0.648 H10 W0F 43 
W0F H11 H11 H 0 1 N N N N N N 189.524 215.296 291.349 5.173  -1.293 1.481  H11 W0F 44 
W0F H12 H12 H 0 1 N N N N N N 193.868 215.174 290.595 4.562  0.608  -2.046 H12 W0F 45 
W0F H13 H13 H 0 1 N N N N N N 195.961 214.905 287.784 5.792  1.553  -3.774 H13 W0F 46 
W0F H14 H14 H 0 1 N N N N N N 194.970 215.958 288.737 6.758  2.899  -3.496 H14 W0F 47 
W0F H15 H15 H 0 1 N N N N N N 189.532 206.848 293.889 -3.002 -3.704 -0.297 H15 W0F 48 
W0F H16 H16 H 0 1 N N N N N N 187.356 206.750 295.323 -6.041 -1.738 0.309  H16 W0F 49 
W0F H17 H17 H 0 1 N N N N N N 185.900 206.213 300.162 -7.712 1.160  1.817  H17 W0F 50 
W0F H18 H18 H 0 1 N N N N N N 188.337 208.142 301.182 -6.312 3.989  1.879  H18 W0F 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W0F N19 C15 SING N N 1  
W0F N16 C15 DOUB N N 2  
W0F N16 C17 SING N N 3  
W0F C15 N14 SING N N 4  
W0F O18 C17 DOUB N N 5  
W0F C17 C12 SING N N 6  
W0F N14 C13 SING N N 7  
W0F C12 C13 DOUB Y N 8  
W0F C12 N11 SING Y N 9  
W0F C13 N09 SING Y N 10 
W0F O08 C07 SING N N 11 
W0F N11 C10 DOUB Y N 12 
W0F N09 C10 SING Y N 13 
W0F N09 C06 SING N N 14 
W0F C07 C06 SING N N 15 
W0F C07 C03 SING N N 16 
W0F C04 C20 SING N N 17 
W0F C04 C03 SING N N 18 
W0F C04 O05 SING N N 19 
W0F O02 C03 SING N N 20 
W0F O02 C01 SING N N 21 
W0F C06 O05 SING N N 22 
W0F O24 P22 DOUB N N 23 
W0F C20 O21 SING N N 24 
W0F O21 P22 SING N N 25 
W0F P22 O23 SING N N 26 
W0F P22 O25 SING N N 27 
W0F O25 P26 SING N N 28 
W0F O28 P26 DOUB N N 29 
W0F O27 P26 SING N N 30 
W0F P26 O29 SING N N 31 
W0F O29 P30 SING N N 32 
W0F P30 O31 DOUB N N 33 
W0F P30 O32 SING N N 34 
W0F P30 O33 SING N N 35 
W0F C10 H1  SING N N 36 
W0F C20 H2  SING N N 37 
W0F C20 H3  SING N N 38 
W0F C01 H4  SING N N 39 
W0F C01 H5  SING N N 40 
W0F C01 H6  SING N N 41 
W0F C03 H7  SING N N 42 
W0F C04 H8  SING N N 43 
W0F C06 H9  SING N N 44 
W0F C07 H10 SING N N 45 
W0F O08 H11 SING N N 46 
W0F N14 H12 SING N N 47 
W0F N19 H13 SING N N 48 
W0F N19 H14 SING N N 49 
W0F O23 H15 SING N N 50 
W0F O27 H16 SING N N 51 
W0F O32 H17 SING N N 52 
W0F O33 H18 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W0F InChI            InChI                1.06  "InChI=1S/C11H18N5O14P3/c1-26-7-4(2-27-32(22,23)30-33(24,25)29-31(19,20)21)28-10(6(7)17)16-3-13-5-8(16)14-11(12)15-9(5)18/h3-4,6-7,10,17H,2H2,1H3,(H,22,23)(H,24,25)(H2,19,20,21)(H3,12,14,15,18)/t4-,6-,7-,10+/m0/s1" 
W0F InChIKey         InChI                1.06  OHOBECDATGAGJW-SXVXDFOESA-N                                                                                                                                                                                            
W0F SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]1[C@H](O)[C@@H](O[C@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)N=C(N)Nc23"                                                                                                                             
W0F SMILES           CACTVS               3.385 "CO[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)N=C(N)Nc23"                                                                                                                                   
W0F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@H]1[C@@H](O[C@H]([C@H]1O)n2cnc3c2NC(=NC3=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O"                                                                                                                                      
W0F SMILES           "OpenEye OEToolkits" 2.0.7 "COC1C(OC(C1O)n2cnc3c2NC(=NC3=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O"                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           W0F 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W0F "Create component" 2023-09-08 PDBJ 
W0F "Initial release"  2023-12-06 RCSB 
# 
