data_VBF
# 
_chem_comp.id                                    VBF 
_chem_comp.name                                  "3-[2-azanyl-6-[2-oxidanylidene-1-[[6-(2-oxidanylpropan-2-yl)pyridin-2-yl]methyl]pyridin-4-yl]pyrimidin-4-yl]-2-methyl-benzenecarbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H24 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-14 
_chem_comp.pdbx_modified_date                    2023-08-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        452.508 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VBF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8JWY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VBF C10 C1  C 0 1 Y N N -7.806  -6.031  51.932 3.580  0.378  0.485  C10 VBF 1  
VBF C13 C2  C 0 1 N N N -9.394  -8.828  53.699 0.067  1.424  -0.381 C13 VBF 2  
VBF C15 C3  C 0 1 N N N -10.247 -10.452 55.218 -2.023 2.535  -0.720 C15 VBF 3  
VBF C17 C4  C 0 1 N N N -11.100 -12.576 54.506 -3.906 1.421  -1.797 C17 VBF 4  
VBF C20 C5  C 0 1 Y N N -14.887 -12.547 54.070 -6.298 1.425  1.116  C20 VBF 5  
VBF C21 C6  C 0 1 Y N N -15.240 -11.882 55.236 -6.488 0.059  1.260  C21 VBF 6  
VBF C22 C7  C 0 1 Y N N -14.247 -11.475 56.109 -5.830 -0.806 0.407  C22 VBF 7  
VBF C24 C8  C 0 1 N N N -15.556 -9.591  57.091 -5.197 -3.025 -0.501 C24 VBF 8  
VBF C28 C9  C 0 1 N N N -10.230 -10.953 52.956 -1.775 0.310  -1.450 C28 VBF 9  
VBF C01 C10 C 0 1 N N N -6.400  -7.860  49.822 6.269  0.716  -0.518 C01 VBF 10 
VBF C02 C11 C 0 1 Y N N -6.713  -6.366  49.696 5.775  -0.643 -0.096 C02 VBF 11 
VBF C03 C12 C 0 1 Y N N -6.316  -5.776  48.508 6.617  -1.752 -0.181 C03 VBF 12 
VBF C04 C13 C 0 1 N N N -5.628  -6.634  47.445 7.954  -1.602 -0.671 C04 VBF 13 
VBF C06 C14 C 0 1 Y N N -6.536  -4.430  48.268 6.152  -3.009 0.212  C06 VBF 14 
VBF C07 C15 C 0 1 Y N N -7.161  -3.660  49.232 4.863  -3.154 0.685  C07 VBF 15 
VBF C08 C16 C 0 1 Y N N -7.558  -4.241  50.423 4.025  -2.059 0.771  C08 VBF 16 
VBF C09 C17 C 0 1 Y N N -7.351  -5.589  50.681 4.479  -0.797 0.386  C09 VBF 17 
VBF C11 C18 C 0 1 Y N N -8.402  -7.267  52.165 2.272  0.313  -0.002 C11 VBF 18 
VBF C12 C19 C 0 1 Y N N -8.822  -7.586  53.446 1.464  1.442  0.120  C12 VBF 19 
VBF C14 C20 C 0 1 N N N -9.689  -9.203  55.000 -0.754 2.567  -0.259 C14 VBF 20 
VBF C18 C21 C 0 1 Y N N -12.595 -12.344 54.751 -4.832 0.947  -0.706 C18 VBF 21 
VBF C19 C22 C 0 1 Y N N -13.535 -12.772 53.834 -5.453 1.871  0.112  C19 VBF 22 
VBF C23 C23 C 0 1 N N N -14.599 -10.737 57.402 -6.029 -2.293 0.554  C23 VBF 23 
VBF C25 C24 C 0 1 N N N -15.247 -11.702 58.392 -5.583 -2.731 1.950  C25 VBF 24 
VBF C30 C25 C 0 1 N N N -9.663  -9.714  52.664 -0.451 0.289  -0.982 C30 VBF 25 
VBF C32 C26 C 0 1 Y N N -8.116  -5.525  54.174 3.207  2.560  1.142  C32 VBF 26 
VBF N05 N1  N 0 1 N N N -5.118  -7.277  46.662 9.015  -1.483 -1.059 N05 VBF 27 
VBF N16 N2  N 0 1 N N N -10.499 -11.277 54.216 -2.527 1.416  -1.303 N16 VBF 28 
VBF N27 N3  N 0 1 Y N N -12.976 -11.712 55.849 -5.028 -0.346 -0.534 N27 VBF 29 
VBF N31 N4  N 0 1 Y N N -8.669  -6.702  54.421 1.962  2.536  0.692  N31 VBF 30 
VBF N33 N5  N 0 1 N N N -7.961  -4.572  55.257 3.687  3.718  1.730  N33 VBF 31 
VBF N34 N6  N 0 1 Y N N -7.701  -5.198  52.960 4.005  1.509  1.044  N34 VBF 32 
VBF O26 O1  O 0 1 N N N -13.419 -10.221 57.950 -7.411 -2.608 0.374  O26 VBF 33 
VBF O29 O2  O 0 1 N N N -10.471 -11.722 52.085 -2.250 -0.684 -1.977 O29 VBF 34 
VBF H1  H1  H 0 1 N N N -10.481 -10.758 56.227 -2.647 3.411  -0.624 H1  VBF 35 
VBF H2  H2  H 0 1 N N N -10.960 -13.254 53.652 -3.986 0.755  -2.656 H2  VBF 36 
VBF H3  H3  H 0 1 N N N -10.636 -13.014 55.402 -4.182 2.432  -2.094 H3  VBF 37 
VBF H4  H4  H 0 1 N N N -15.638 -12.879 53.369 -6.800 2.124  1.768  H4  VBF 38 
VBF H5  H5  H 0 1 N N N -16.278 -11.685 55.459 -7.143 -0.324 2.029  H5  VBF 39 
VBF H6  H6  H 0 1 N N N -15.809 -9.061  58.021 -4.143 -2.785 -0.363 H6  VBF 40 
VBF H7  H7  H 0 1 N N N -15.076 -8.893  56.390 -5.341 -4.101 -0.395 H7  VBF 41 
VBF H8  H8  H 0 1 N N N -16.474 -9.993  56.637 -5.514 -2.713 -1.496 H8  VBF 42 
VBF H9  H9  H 0 1 N N N -5.404  -7.990  50.271 6.639  1.256  0.354  H9  VBF 43 
VBF H10 H10 H 0 1 N N N -7.156  -8.340  50.461 7.075  0.601  -1.243 H10 VBF 44 
VBF H11 H11 H 0 1 N N N -6.415  -8.323  48.824 5.451  1.276  -0.971 H11 VBF 45 
VBF H12 H12 H 0 1 N N N -6.222  -3.985  47.335 6.802  -3.869 0.147  H12 VBF 46 
VBF H13 H13 H 0 1 N N N -7.338  -2.609  49.056 4.508  -4.127 0.988  H13 VBF 47 
VBF H14 H14 H 0 1 N N N -8.041  -3.630  51.171 3.018  -2.179 1.141  H14 VBF 48 
VBF H15 H15 H 0 1 N N N -8.536  -7.970  51.356 1.897  -0.590 -0.461 H15 VBF 49 
VBF H16 H16 H 0 1 N N N -9.488  -8.536  55.826 -0.368 3.464  0.203  H16 VBF 50 
VBF H17 H17 H 0 1 N N N -13.220 -13.281 52.935 -5.281 2.928  -0.029 H17 VBF 51 
VBF H18 H18 H 0 1 N N N -15.497 -11.164 59.319 -6.176 -2.210 2.701  H18 VBF 52 
VBF H19 H19 H 0 1 N N N -16.165 -12.118 57.951 -5.727 -3.807 2.056  H19 VBF 53 
VBF H20 H20 H 0 1 N N N -14.546 -12.519 58.620 -4.529 -2.491 2.088  H20 VBF 54 
VBF H21 H21 H 0 1 N N N -9.435  -9.445  51.643 0.154  -0.599 -1.089 H21 VBF 55 
VBF H22 H22 H 0 1 N N N -7.530  -3.739  54.910 3.113  4.496  1.808  H22 VBF 56 
VBF H23 H23 H 0 1 N N N -8.859  -4.349  55.636 4.597  3.750  2.064  H23 VBF 57 
VBF H24 H24 H 0 1 N N N -13.619 -9.758  58.755 -7.613 -3.550 0.455  H24 VBF 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VBF N05 C04 TRIP N N 1  
VBF C04 C03 SING N N 2  
VBF C06 C03 DOUB Y N 3  
VBF C06 C07 SING Y N 4  
VBF C03 C02 SING Y N 5  
VBF C07 C08 DOUB Y N 6  
VBF C02 C01 SING N N 7  
VBF C02 C09 DOUB Y N 8  
VBF C08 C09 SING Y N 9  
VBF C09 C10 SING N N 10 
VBF C10 C11 DOUB Y N 11 
VBF C10 N34 SING Y N 12 
VBF O29 C28 DOUB N N 13 
VBF C11 C12 SING Y N 14 
VBF C30 C28 SING N N 15 
VBF C30 C13 DOUB N N 16 
VBF C28 N16 SING N N 17 
VBF N34 C32 DOUB Y N 18 
VBF C12 C13 SING N N 19 
VBF C12 N31 DOUB Y N 20 
VBF C13 C14 SING N N 21 
VBF C19 C20 DOUB Y N 22 
VBF C19 C18 SING Y N 23 
VBF C20 C21 SING Y N 24 
VBF C32 N31 SING Y N 25 
VBF C32 N33 SING N N 26 
VBF N16 C17 SING N N 27 
VBF N16 C15 SING N N 28 
VBF C17 C18 SING N N 29 
VBF C18 N27 DOUB Y N 30 
VBF C14 C15 DOUB N N 31 
VBF C21 C22 DOUB Y N 32 
VBF N27 C22 SING Y N 33 
VBF C22 C23 SING N N 34 
VBF C24 C23 SING N N 35 
VBF C23 O26 SING N N 36 
VBF C23 C25 SING N N 37 
VBF C15 H1  SING N N 38 
VBF C17 H2  SING N N 39 
VBF C17 H3  SING N N 40 
VBF C20 H4  SING N N 41 
VBF C21 H5  SING N N 42 
VBF C24 H6  SING N N 43 
VBF C24 H7  SING N N 44 
VBF C24 H8  SING N N 45 
VBF C01 H9  SING N N 46 
VBF C01 H10 SING N N 47 
VBF C01 H11 SING N N 48 
VBF C06 H12 SING N N 49 
VBF C07 H13 SING N N 50 
VBF C08 H14 SING N N 51 
VBF C11 H15 SING N N 52 
VBF C14 H16 SING N N 53 
VBF C19 H17 SING N N 54 
VBF C25 H18 SING N N 55 
VBF C25 H19 SING N N 56 
VBF C25 H20 SING N N 57 
VBF C30 H21 SING N N 58 
VBF N33 H22 SING N N 59 
VBF N33 H23 SING N N 60 
VBF O26 H24 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VBF InChI            InChI                1.06  "InChI=1S/C26H24N6O2/c1-16-18(14-27)6-4-8-20(16)22-13-21(30-25(28)31-22)17-10-11-32(24(33)12-17)15-19-7-5-9-23(29-19)26(2,3)34/h4-13,34H,15H2,1-3H3,(H2,28,30,31)" 
VBF InChIKey         InChI                1.06  LMPHIHXCTONPFG-UHFFFAOYSA-N                                                                                                                                        
VBF SMILES_CANONICAL CACTVS               3.385 "Cc1c(cccc1c2cc(nc(N)n2)C3=CC(=O)N(Cc4cccc(n4)C(C)(C)O)C=C3)C#N"                                                                                                   
VBF SMILES           CACTVS               3.385 "Cc1c(cccc1c2cc(nc(N)n2)C3=CC(=O)N(Cc4cccc(n4)C(C)(C)O)C=C3)C#N"                                                                                                   
VBF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1c2cc(nc(n2)N)C3=CC(=O)N(C=C3)Cc4cccc(n4)C(C)(C)O)C#N"                                                                                                   
VBF SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1c2cc(nc(n2)N)C3=CC(=O)N(C=C3)Cc4cccc(n4)C(C)(C)O)C#N"                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           VBF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-[2-azanyl-6-[2-oxidanylidene-1-[[6-(2-oxidanylpropan-2-yl)pyridin-2-yl]methyl]pyridin-4-yl]pyrimidin-4-yl]-2-methyl-benzenecarbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VBF "Create component" 2023-07-14 PDBJ 
VBF "Initial release"  2023-08-16 RCSB 
# 
