data_SJF
# 
_chem_comp.id                                    SJF 
_chem_comp.name                                  "(1S,3aR,6aS)-2-[(3,4-dichlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}octahydrocyclopenta[c]pyrrole-1-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H29 Cl2 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        498.399 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SJF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TY3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SJF C1  C1  C  0 1 N N N N N N -6.080  -14.302 -18.093 1.057  -4.827 0.262  C1  SJF 1  
SJF C10 C2  C  0 1 N N N N N N -6.160  -13.102 -17.155 1.513  -4.637 1.720  C10 SJF 2  
SJF C11 C3  C  0 1 N N N N N N -9.520  -17.705 -18.673 -1.853 -0.207 0.197  C11 SJF 3  
SJF C12 C4  C  0 1 N N N N N N -9.699  -16.409 -17.905 -0.355 -0.101 0.325  C12 SJF 4  
SJF C13 C5  C  0 1 N N N N N N -7.910  -15.441 -19.332 -0.102 -2.595 0.202  C13 SJF 5  
SJF C14 C6  C  0 1 N N S N N N -9.120  -14.060 -17.696 1.866  -1.257 0.440  C14 SJF 6  
SJF C15 C7  C  0 1 N N N N N N -10.528 -13.539 -17.831 2.492  -0.467 -0.681 C15 SJF 7  
SJF C16 C8  C  0 1 N N R N N N -7.182  -14.135 -19.132 1.083  -3.414 -0.353 C16 SJF 8  
SJF C17 C9  C  0 1 N N S N N N -12.419 -12.432 -16.783 4.379  0.714  -1.670 C17 SJF 9  
SJF C19 C10 C  0 1 N N N N N N -13.301 -13.203 -15.782 5.522  1.567  -1.116 C19 SJF 10 
SJF C2  C11 C  0 1 N N N N N N -7.368  -12.284 -17.612 2.320  -3.331 1.764  C2  SJF 11 
SJF C20 C12 C  0 1 N N S N N N -13.455 -14.660 -16.213 4.957  2.612  -0.151 C20 SJF 12 
SJF C21 C13 C  0 1 N N N N N N -14.288 -14.797 -17.480 6.090  3.508  0.400  C21 SJF 13 
SJF C22 C14 C  0 1 N N N N N N -15.085 -16.084 -17.284 6.450  2.787  1.718  C22 SJF 14 
SJF C24 C15 C  0 1 N N N N N N -14.230 -15.486 -15.229 4.383  1.942  1.078  C24 SJF 15 
SJF C3  C16 C  0 1 Y N N N N N -11.828 -18.500 -18.901 -3.780 1.184  0.121  C3  SJF 16 
SJF C34 C17 C  0 1 N N S N N N -8.177  -13.192 -18.515 2.301  -2.733 0.346  C34 SJF 17 
SJF C4  C18 C  0 1 Y N N N N N -12.795 -19.495 -18.747 -4.403 2.424  0.142  C4  SJF 18 
SJF C5  C19 C  0 1 Y N N N N N -14.065 -19.334 -19.301 -5.778 2.507  0.034  C5  SJF 19 
SJF C6  C20 C  0 1 Y N N N N N -14.360 -18.169 -20.022 -6.534 1.355  -0.093 C6  SJF 20 
SJF C7  C21 C  0 1 Y N N N N N -13.391 -17.192 -20.173 -5.914 0.117  -0.114 C7  SJF 21 
SJF C8  C22 C  0 1 N N N N N N -12.382 -10.939 -16.440 4.927  -0.247 -2.727 C8  SJF 22 
SJF C9  C23 C  0 1 Y N N N N N -12.137 -17.351 -19.614 -4.537 0.031  -0.012 C9  SJF 23 
SJF N13 N1  N  0 1 N N N N N N -8.946  -15.388 -18.301 0.402  -1.216 0.322  N13 SJF 24 
SJF N16 N2  N  0 1 N N N N N N -11.052 -12.938 -16.767 3.771  -0.054 -0.581 N16 SJF 25 
SJF N23 N3  N  0 1 N N N N N N -15.052 -16.326 -15.854 5.236  2.060  2.110  N23 SJF 26 
SJF O1  O1  O  0 1 N N N N N N -10.570 -18.635 -18.363 -2.427 1.102  0.226  O1  SJF 27 
SJF O26 O2  O  0 1 N N N N N N -14.108 -15.362 -14.023 3.309  1.380  1.125  O26 SJF 28 
SJF O33 O3  O  0 1 N N N N N N -10.503 -16.309 -16.991 0.169  0.988  0.430  O33 SJF 29 
SJF O38 O4  O  0 1 N N N N N N -11.132 -13.667 -18.885 1.845  -0.204 -1.672 O38 SJF 30 
SJF O9  O5  O  0 1 N N N N N N -13.680 -10.347 -16.631 5.992  -1.016 -2.166 O9  SJF 31 
SJF CL1 CL1 CL 0 0 N N N N N N -13.724 -15.678 -21.071 -6.864 -1.327 -0.274 CL1 SJF 32 
SJF CL2 CL2 CL 0 0 N N N N N N -15.981 -17.921 -20.765 -8.261 1.462  -0.227 CL2 SJF 33 
SJF H1  H1  H  0 1 N N N N N N -6.233  -15.233 -17.528 1.747  -5.484 -0.268 H1  SJF 34 
SJF H2  H2  H  0 1 N N N N N N -5.097  -14.330 -18.587 0.047  -5.237 0.231  H2  SJF 35 
SJF H3  H3  H  0 1 N N N N N N -6.298  -13.438 -16.117 0.645  -4.561 2.375  H3  SJF 36 
SJF H4  H4  H  0 1 N N N N N N -5.242  -12.500 -17.227 2.140  -5.474 2.028  H4  SJF 37 
SJF H5  H5  H  0 1 N N N N N N -8.552  -18.152 -18.404 -2.104 -0.693 -0.745 H5  SJF 38 
SJF H6  H6  H  0 1 N N N N N N -9.537  -17.490 -19.752 -2.247 -0.795 1.026  H6  SJF 39 
SJF H7  H7  H  0 1 N N N N N N -8.353  -15.499 -20.337 -0.943 -2.631 -0.491 H7  SJF 40 
SJF H8  H8  H  0 1 N N N N N N -7.238  -16.298 -19.177 -0.400 -2.976 1.179  H8  SJF 41 
SJF H9  H9  H  0 1 N N N N N N -8.812  -14.065 -16.640 2.171  -0.842 1.400  H9  SJF 42 
SJF H10 H10 H  0 1 N N N N N N -6.784  -13.743 -20.080 1.143  -3.405 -1.442 H10 SJF 43 
SJF H11 H11 H  0 1 N N N N N N -12.846 -12.551 -17.790 3.628  1.362  -2.122 H11 SJF 44 
SJF H12 H12 H  0 1 N N N N N N -12.834 -13.168 -14.787 6.229  0.928  -0.586 H12 SJF 45 
SJF H13 H13 H  0 1 N N N N N N -14.294 -12.732 -15.738 6.032  2.070  -1.938 H13 SJF 46 
SJF H14 H14 H  0 1 N N N N N N -7.037  -11.392 -18.165 1.860  -2.635 2.466  H14 SJF 47 
SJF H15 H15 H  0 1 N N N N N N -7.969  -11.975 -16.744 3.346  -3.539 2.068  H15 SJF 48 
SJF H16 H16 H  0 1 N N N N N N -12.461 -15.103 -16.374 4.197  3.216  -0.646 H16 SJF 49 
SJF H17 H17 H  0 1 N N N N N N -13.639 -14.874 -18.364 6.941  3.524  -0.281 H17 SJF 50 
SJF H18 H18 H  0 1 N N N N N N -14.963 -13.936 -17.595 5.729  4.518  0.594  H18 SJF 51 
SJF H19 H19 H  0 1 N N N N N N -16.121 -15.955 -17.631 7.271  2.090  1.555  H19 SJF 52 
SJF H20 H20 H  0 1 N N N N N N -14.616 -16.917 -17.829 6.718  3.514  2.485  H20 SJF 53 
SJF H21 H21 H  0 1 N N N N N N -8.721  -12.619 -19.280 3.237  -2.868 -0.196 H21 SJF 54 
SJF H22 H22 H  0 1 N N N N N N -12.559 -20.394 -18.196 -3.814 3.323  0.242  H22 SJF 55 
SJF H23 H23 H  0 1 N N N N N N -14.815 -20.101 -19.175 -6.263 3.471  0.051  H23 SJF 56 
SJF H24 H24 H  0 1 N N N N N N -12.079 -10.816 -15.390 4.131  -0.915 -3.058 H24 SJF 57 
SJF H25 H25 H  0 1 N N N N N N -11.654 -10.435 -17.093 5.300  0.323  -3.578 H25 SJF 58 
SJF H26 H26 H  0 1 N N N N N N -11.394 -16.577 -19.733 -4.054 -0.935 -0.029 H26 SJF 59 
SJF H27 H27 H  0 1 N N N N N N -10.498 -12.831 -15.941 4.288  -0.264 0.212  H27 SJF 60 
SJF H28 H28 H  0 1 N N N N N N -15.583 -17.038 -15.394 5.072  1.709  2.999  H28 SJF 61 
SJF H29 H29 H  0 1 N N N N N N -13.642 -9.423  -16.415 6.388  -1.648 -2.781 H29 SJF 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SJF CL1 C7  SING N N 1  
SJF CL2 C6  SING N N 2  
SJF C7  C6  DOUB Y N 3  
SJF C7  C9  SING Y N 4  
SJF C6  C5  SING Y N 5  
SJF C9  C3  DOUB Y N 6  
SJF C13 C16 SING N N 7  
SJF C13 N13 SING N N 8  
SJF C5  C4  DOUB Y N 9  
SJF C16 C34 SING N N 10 
SJF C16 C1  SING N N 11 
SJF C3  C4  SING Y N 12 
SJF C3  O1  SING N N 13 
SJF O38 C15 DOUB N N 14 
SJF C11 O1  SING N N 15 
SJF C11 C12 SING N N 16 
SJF C34 C14 SING N N 17 
SJF C34 C2  SING N N 18 
SJF N13 C12 SING N N 19 
SJF N13 C14 SING N N 20 
SJF C1  C10 SING N N 21 
SJF C12 O33 DOUB N N 22 
SJF C15 C14 SING N N 23 
SJF C15 N16 SING N N 24 
SJF C2  C10 SING N N 25 
SJF C21 C22 SING N N 26 
SJF C21 C20 SING N N 27 
SJF C22 N23 SING N N 28 
SJF C17 N16 SING N N 29 
SJF C17 C8  SING N N 30 
SJF C17 C19 SING N N 31 
SJF O9  C8  SING N N 32 
SJF C20 C19 SING N N 33 
SJF C20 C24 SING N N 34 
SJF N23 C24 SING N N 35 
SJF C24 O26 DOUB N N 36 
SJF C1  H1  SING N N 37 
SJF C1  H2  SING N N 38 
SJF C10 H3  SING N N 39 
SJF C10 H4  SING N N 40 
SJF C11 H5  SING N N 41 
SJF C11 H6  SING N N 42 
SJF C13 H7  SING N N 43 
SJF C13 H8  SING N N 44 
SJF C14 H9  SING N N 45 
SJF C16 H10 SING N N 46 
SJF C17 H11 SING N N 47 
SJF C19 H12 SING N N 48 
SJF C19 H13 SING N N 49 
SJF C2  H14 SING N N 50 
SJF C2  H15 SING N N 51 
SJF C20 H16 SING N N 52 
SJF C21 H17 SING N N 53 
SJF C21 H18 SING N N 54 
SJF C22 H19 SING N N 55 
SJF C22 H20 SING N N 56 
SJF C34 H21 SING N N 57 
SJF C4  H22 SING N N 58 
SJF C5  H23 SING N N 59 
SJF C8  H24 SING N N 60 
SJF C8  H25 SING N N 61 
SJF C9  H26 SING N N 62 
SJF N16 H27 SING N N 63 
SJF N23 H28 SING N N 64 
SJF O9  H29 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SJF SMILES           ACDLabs              12.01 "O=C1NCCC1CC(CO)NC(=O)C1C2CCCC2CN1C(=O)COc1ccc(Cl)c(Cl)c1"                                                                                                                                                           
SJF InChI            InChI                1.06  "InChI=1S/C23H29Cl2N3O5/c24-18-5-4-16(9-19(18)25)33-12-20(30)28-10-14-2-1-3-17(14)21(28)23(32)27-15(11-29)8-13-6-7-26-22(13)31/h4-5,9,13-15,17,21,29H,1-3,6-8,10-12H2,(H,26,31)(H,27,32)/t13-,14-,15-,17-,21-/m0/s1" 
SJF InChIKey         InChI                1.06  DSVCEMXKUZHNPU-ICWLNENESA-N                                                                                                                                                                                          
SJF SMILES_CANONICAL CACTVS               3.385 "OC[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@H]3CCC[C@H]3CN2C(=O)COc4ccc(Cl)c(Cl)c4"                                                                                                                                     
SJF SMILES           CACTVS               3.385 "OC[CH](C[CH]1CCNC1=O)NC(=O)[CH]2[CH]3CCC[CH]3CN2C(=O)COc4ccc(Cl)c(Cl)c4"                                                                                                                                            
SJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1OCC(=O)N2C[C@@H]3CCC[C@@H]3[C@H]2C(=O)N[C@@H](C[C@@H]4CCNC4=O)CO)Cl)Cl"                                                                                                                                   
SJF SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1OCC(=O)N2CC3CCCC3C2C(=O)NC(CC4CCNC4=O)CO)Cl)Cl"                                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SJF "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,3aR,6aS)-2-[(3,4-dichlorophenoxy)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}octahydrocyclopenta[c]pyrrole-1-carboxamide"                                                                          
SJF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},3~{a}~{S},6~{a}~{R})-2-[2-[3,4-bis(chloranyl)phenoxy]ethanoyl]-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrole-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SJF "Create component" 2023-08-28 RCSB 
SJF "Initial release"  2024-08-28 RCSB 
SJF "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            SJF 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
